Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1227_4 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Length | 89 |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | Metallopeptidase, catalytic domain |
| Ec32 ortholog | Ec-03_002080.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1227_4a-0001 ID=EsuBft1227_4a-0001|Name=EsuBft1227_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=897bp|location=Sequence derived from alignment at Scaffold_420:179106..181095+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAGCTGCGCCATGAGTATATCAACTTGTGGGCACGCTCTGCTAGTATT
TTTTGCGGGAATGGACAGTGGACTCTGCCAAAGATCCCTCCATGGTGTTC
CCTTCGCAGGAATCGGTTCTGTCCGACCGCTGCGCAGTGCATCCCTCTCC
TCTTTCTCAACCCCGATGTCCACTGTTCTCAACGGGAGTGTATCTGAGAT
TGAGGGTGAGACGGCCACGAACTCGACATCCCTGAACTCAACAGCTGACG
CTGTCGATTCAATAGCCACAAATTCATCATGGTCATCTGAAACGGACGTA
AGTGTACCTGTCGGGGCGAACTCGTCCTCTTCATCGTCGTCCTCGTCAGT
CGTATACGGCTTGGAGCTCATATCAACCAACACCTCAGCCGCGGTGGGAG
ACACGGTCCTGTCGAATTCGTCCGGAGCTTTCACGAACGTGTCAGCCGTG
GAGAAGGAACTTGTCGAAACGCTCGAGGTTGACGAGCAAGTCACAGGTGA
TTTCGCATGTATGTGGACTATCTCAAGGTGTTCTGGCAACAACCTGTGTG
CCACTACTGTACAAGGAAAGAGGCGCACGGTGGCGTACCACGTGGAGCAC
CCCAACCTCGTTTCACCCGTCGACGATGAAATTACGAATCGTTCAGTACT
TGGTGAGGTCCAGCTGGGCGAGCTGCTGTGCGACGGCCTGGTTCAAGCAG
AAGACGCACCACTCCTTCAGTTCGCGCTTAGCGCTAACGAGATTTGGAAC
GGGGTCGTCATTGACCCCGCACCGGATGCGGATGAGGCTTTCCCACGAGG
CGTCAGCATGACTTGGGGCGAAGTATGCGACATTGAGGGGCAGCAGGAAT
CGACCTTGCAGCAGAACAGCTTCCGTAGCCCTTTGGACGCAGGGTAG back to topprotein sequence of EsuBft1227_4a-0001 >EsuBft1227_4 ID=EsuBft1227_4|Name=EsuBft1227_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=298bp
MSCAMSISTCGHALLVFFAGMDSGLCQRSLHGVPFAGIGSVRPLRSASLS
SFSTPMSTVLNGSVSEIEGETATNSTSLNSTADAVDSIATNSSWSSETDV
SVPVGANSSSSSSSSSVVYGLELISTNTSAAVGDTVLSNSSGAFTNVSAV
EKELVETLEVDEQVTGDFACMWTISRCSGNNLCATTVQGKRRTVAYHVEH
PNLVSPVDDEITNRSVLGEVQLGELLCDGLVQAEDAPLLQFALSANEIWN
GVVIDPAPDADEAFPRGVSMTWGEVCDIEGQQESTLQQNSFRSPLDAG back to topmRNA from alignment at Scaffold_420:179106..181095+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1227_4a-0001 ID=EsuBft1227_4a-0001|Name=EsuBft1227_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1990bp|location=Sequence derived from alignment at Scaffold_420:179106..181095+ (Ectocarpus subulatus male Bft15b)
ATGAGCTGCGCCATGAGTATATCAACTTGTGGGCACGCTCTGCTAGTATT
TTTTGCGGGAATGGACAGTGGACTCTGCCAAAGATCCCTCCATGGTGTTC
CCTTCGCAGGAATCGGTTCTGTCCGACCGCTGCGCAGTGCATCCCTCTCC
TCTTTCTCAACCCCGATGTCCACTGTTCTCAACGGGAGTGTATCTGAGAT
TGAGGGTGAGACGGCCACGAACTCGACATCCCTGAACTCAACAGCTGACG
CTGTCGATTCAATAGCCACAAATTCATCATGGTCATCTGAAACGGACGTA
AGTGTACCTGTCGGGGCGAACTCGTCCTCTTCATCGTCGTCCTCGTCAGT
CGTATACGGCTTGGAGCTCATATCAACCAACACCTCAGCCGCGGTGGGAG
ACACGGTCCTGTCGAATTCGTCCGGAGCTTTCACGAACGTGTCAGCCGTG
GAGAAGGAACTTGTCGAAACGCTCGAGGTTGACGAGCAAGTCACAGGTGA
TTTCGCATGTATGTGGACTATCTCAAGGTGTTCTGGCAACAACCTGTGTG
CCACTACTGTACAAGGAAAGGTAGGGCCTGAACTACCACCGAACATCGTT
GGCGGTGGTCGACGAAACGCTGGGAATGGTGCTCCGAAACTTTTTAAGTT
CCGGCTTCCGTGGCATAAAGGTGGCTGTCGTGAAGGGCAACAGTACATGA
ATACCTGTGGAATACGCGTTGCAAGCGTTCTTGATTAAGGAACACTATGG
TACGAGAGTAGAGGCGCACGGTGGCGTACCACGTGGAGCACCCCAACCTC
GTTTCACCCGTCGACGATGAAATTACGAATCGTTCAGTACTTGGTGAGGT
CCAGCTGGGCGAGCTGCTGTGCGACGGCCTGGTTCAAGCAGAAGACGCAC
CACTCCTTCAGTTCGCGCTTAGCGCTAACGAGGTTGGTCCATTGGTGGTG
TAGCGCTTGGCTCGATTTCAGGAAGCGTGGCCACGACTCTCACGTACCTC
GTAAGTCCAGCAAGGTTCCGTGCAACGGTGCACCTCCCACACTATTGTAC
ATGTACTTTAGAAAGGAAACCCTCTCTCTCCTCAGCCGTCCGTCGATCGT
CCAATACTTTGGCAGACGATCATCGCGAACCAAACTTCCTACACGGTCGT
CAGTGGGGAGACTTTTACGGGCGGAGTAGGTCGAAGGGTGAGCAGTGTAG
GCCTATTTTGCTGTAGGGCGCCCGTCCCTTGTTGGTGTTCCATTGCGGCT
AGGTTATATTGCGGAATGTTTCTGATAGTCACTGCCACCACCACCGCAAC
CATTCAACACCATCACCAACAATCAAAACAACGACAATTGCTGTGCGTTA
AACCAACGATGGCGTTCCCGAAACATTTTGTTGAAGATTTGGAACGGGGT
CGTCATTGACCCCGCACCGGATGCGGATGAGGCTTTCCCACGAGGCGTCA
GCATGACTTGGGGCGAAGTATGCGACATTGAGGTGAGCGCTTCTTGCTAC
TTATTGTTAGAGAGACATGCTCGCATCCCGCTTCGCCGTTAGAAGACACC
TTGCTCGTGCAAGGGGCAGGAAACTCAGAGTTGGCCTGAGCCATCGTTAG
GGTTCGGGCTGCAGATGCGCCCAAGTATATTTAGTTCTGAAACAGACACG
AGATAAAACATGCTTTCTCCGTTCGTAGAAAAACTTCGTTCGTCGAGTTC
TGTAGTGTGGTGTTCCTCAGTGCCATGGTAACACTATCAAGTATGAGCAG
TGGAAAACCGTCACGAAAGCCGTACTGGAATCTCCATGAACGACATCTTC
AAGATTTTGACCGGTGAGTATCACCAAGACCGCAAGTGCACGCGTGCAGA
CACCCAGGATGCCCTGGTGTCCAGCGGATAAGCCGCTGGTTGGGACCGCA
AACTGGTTGAAGCAAGTGTCCAAGACACAGGGGCAGCAGGAATCGACCTT
GCAGCAGAACAGCTTCCGTAGCCCTTTGGACGCAGGGTAG back to topCoding sequence (CDS) from alignment at Scaffold_420:179106..181095+ >EsuBft1227_4a-0001 ID=EsuBft1227_4a-0001|Name=EsuBft1227_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=897bp|location=Sequence derived from alignment at Scaffold_420:179106..181095+ (Ectocarpus subulatus male Bft15b)
ATGAGCTGCGCCATGAGTATATCAACTTGTGGGCACGCTCTGCTAGTATT
TTTTGCGGGAATGGACAGTGGACTCTGCCAAAGATCCCTCCATGGTGTTC
CCTTCGCAGGAATCGGTTCTGTCCGACCGCTGCGCAGTGCATCCCTCTCC
TCTTTCTCAACCCCGATGTCCACTGTTCTCAACGGGAGTGTATCTGAGAT
TGAGGGTGAGACGGCCACGAACTCGACATCCCTGAACTCAACAGCTGACG
CTGTCGATTCAATAGCCACAAATTCATCATGGTCATCTGAAACGGACGTA
AGTGTACCTGTCGGGGCGAACTCGTCCTCTTCATCGTCGTCCTCGTCAGT
CGTATACGGCTTGGAGCTCATATCAACCAACACCTCAGCCGCGGTGGGAG
ACACGGTCCTGTCGAATTCGTCCGGAGCTTTCACGAACGTGTCAGCCGTG
GAGAAGGAACTTGTCGAAACGCTCGAGGTTGACGAGCAAGTCACAGGTGA
TTTCGCATGTATGTGGACTATCTCAAGGTGTTCTGGCAACAACCTGTGTG
CCACTACTGTACAAGGAAAGAGGCGCACGGTGGCGTACCACGTGGAGCAC
CCCAACCTCGTTTCACCCGTCGACGATGAAATTACGAATCGTTCAGTACT
TGGTGAGGTCCAGCTGGGCGAGCTGCTGTGCGACGGCCTGGTTCAAGCAG
AAGACGCACCACTCCTTCAGTTCGCGCTTAGCGCTAACGAGATTTGGAAC
GGGGTCGTCATTGACCCCGCACCGGATGCGGATGAGGCTTTCCCACGAGG
CGTCAGCATGACTTGGGGCGAAGTATGCGACATTGAGGGGCAGCAGGAAT
CGACCTTGCAGCAGAACAGCTTCCGTAGCCCTTTGGACGCAGGGTAG back to top
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