Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LCP9 |
| ProteomeId | EsuBft1227_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 62 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.67e-76 |
| EggNOG OGs | 2E49E@1|root,2SB7B@2759|Eukaryota |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-03_002070.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1227_3a-0001 ID=EsuBft1227_3a-0001|Name=EsuBft1227_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=621bp|location=Sequence derived from alignment at Scaffold_420:166485..168815+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGGGCTCACATTCATCTTGAGCATCTTCCGTGACCCCGTAACTTCGAG
CATCCCCGAACTTGAGGCGGCTCAGCGGAACCCAACGTTTCAGCTTCGCA
CGTTCGGGCCCTACCGTTCAGAGTACGGCCGCCTGGTGGAGTTCCCACAC
TTGCCCCCCCTGCTGGGCCAACAACATTGTGCCATTGCGGCCGGTTTCGG
TGTATACCATTCCTCTGCTAGCCTGGCACTGCTTCAGTTCGTTACCAACA
CCCTTCTCGCCGAGCGGTCCCCCGGGATTCACATCCAGACCGCTCTGACA
CGCCACGAAGATGTTCAGATTGTTGGTGACACCAGCGGCCCCGAGCCTGA
GCTGGTCATGGGTCACCTGGACATCAAGCACGACACGACAGATTCCAATT
CTTTGTTCGCCGGCTACGTTCGACGGTACGACAAGTTTGTGAACCCGCGC
TGGCGGGCGTTGCCCCTGGTGTTCGCATGTTTGGTGCTTCCTCAGACAAT
CATCGGTGAAGTTTCCCAAGAAACGGAGGTTTACTTCTGCGGTGGTGGGG
GCGTCAACGCGCCTCTTTGCGAGACGTGCGCTAGGCGTGGCATCAAGTAC
GTCGGCAGATCCGTCCAGTGA back to topprotein sequence of EsuBft1227_3a-0001 >EsuBft1227_3 ID=EsuBft1227_3|Name=EsuBft1227_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=206bp
MGLTFILSIFRDPVTSSIPELEAAQRNPTFQLRTFGPYRSEYGRLVEFPH
LPPLLGQQHCAIAAGFGVYHSSASLALLQFVTNTLLAERSPGIHIQTALT
RHEDVQIVGDTSGPEPELVMGHLDIKHDTTDSNSLFAGYVRRYDKFVNPR
WRALPLVFACLVLPQTIIGEVSQETEVYFCGGGGVNAPLCETCARRGIKY
VGRSVQ back to topmRNA from alignment at Scaffold_420:166485..168815+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1227_3a-0001 ID=EsuBft1227_3a-0001|Name=EsuBft1227_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2331bp|location=Sequence derived from alignment at Scaffold_420:166485..168815+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTCACATTCATCTTGAGCATCTTCCGTGACCCCGTAACTTCGAG
CATCCCCGAACTTGAGGCGGCTCAGCGGAACCCAACGTTTCAGCTTCGCA
CGTTCGGGCCCTACCGTTCAGAGTACGGCCGCCTGGTGGAGTTCCCACAC
TTGCCCCCCCTGCTGGTATGAACGGTTGCGGGATTTGCGATTTATTGGAA
CGTTGTCGAGAAACCTTCGGAGGGTTGTTGAAAGGCTGGAACCAACCAAC
CAGTTGGTCGGTCTAGTGCGCTGATGGCAATGTGGGACGCAAGTCACGCT
GACGCAGCCGATGGTGAGGCCGTTGCTTGATTAACGTTTACCATGCTAGA
CCAACTGATGATTCCTAGACATCACGGCATCCGGTTGCTTCCGCACGTCT
GGCCCTTGCGGGTTTTCAATTTGGTTCAAATTCTTCGCAAAGATGTGCAT
AACATCGTGCCTTCATCGTGCCTGTGGCATCCATCGCGCGCATCTCTTGC
ACAAGATCGTTGCTCCAGGTGCGGGAGCGGCTCTCGTCCTCGACTTCATG
GGGTATGTTAGGGCCAACAACATTGTGCCATTGCGGCCGGTTTCGGTGTA
TACCATTCCTCTGCTAGCCTGGCACTGCTTCAGTTCGTTACCAACACCCT
TCTCGCCGAGCGGTCCCCCGGGATTCACATCCAGACCGCTCTGACACGCC
ACGAAGATGTTCAGGTGAATACTCAATGGCAGTGGGGGAAAGTGGTGTTG
GTATTGAGTGCTGTAATACGTGTAACAACATATTCGCCTGATTGAGAGCG
TAGCATCTGATTGAGAGCGAGATCGCGCGATACGCTGTAGCCGGACTACC
ACTGAGAGGTGGAGCTTGCTGTGTAGCTTGAATTGAAGGGCTAGCCCGTA
GCTTCAAGCCGCTACCCTGGTCATCCTGTGGGAGTCTCTCGTTGTGGAGC
TACAGCGGGGAGCAGAAGCTACAGCAGAGCCCACCGCCCGACGCGATACC
GCCCTGAAACAGTTTGAGCAGAAATAGCCAATCTGGGCAAATCTAGCAAC
TTGTCTAGCTCCTCGCTGCAGCATCCGATGACGATGACACGCATATGCTC
GCGAAGCTGCTGATGAGACCTTCAATTTGCACCGCTTCTTGGAATAGCCC
GTCCCCTACTTGCCAAGAAATGGCAAGAGGCGTCTGGACCCGAAATTTCA
ATTTTTTTGGCTCTCGCTCTCAATCAGATACTTCGCTCTCAATCAGGCGA
ATATGTTGTTGTGTGCGAATTGTAGTGTTCCGGGAACGACGCTTTTCCTC
GCAACGAAGTATCGGAGGGACTGCACGAGTGGTACACAGAGCACACCCAC
GGTGAAATTTCCCTGATGACCACAGACCACTCAGAGGTTCGCACATGAGA
TAGAGCCATGGGGTTGATCCCAAGCTTCCAGTAACACGGAGGCACGGGAA
CACGGCCTCTTGTCGATCCCACCACTCGCTAGACAGGCTGAACCCGGTGT
TTTTTGCGGCCATCTCACCCACCTTTATCAGTACTCACCTCTCTCGTGAA
CTATGATCATATCGACGGTTGCAAACCACAAACTGTTGGGGACCCTCAAC
CTTTGTCGGTCACACCTCATTTTGTGCCACAGCTCCTCTCCACTTTGGTG
AGTACGGACAGATCGTGTCGTTCGCGTAGACCGACGGCTTATCCGATGAC
CTACGCTGCTTCTGAAGGCTATGTGCGTCCTTACCATTGGAGAACTGGAA
TAATCTCCACCCGATACTCTCTTCACGAAAATGTTGCACAAGATTATTCA
TTCCTCGCTGGGCTTCTTCGTTCGCAGATTGTTGGTGACACCAGCGGCCC
CGAGCCTGAGCTGGTCATGGGTCACCTGGACATCAAGGTGAGCGATCAAC
CTTCCGTTCCATACATCCACTGCTTGTAGTGAGTATTAATGGACAATAGT
ACGTTCTTGCCAGACGCCACGTTCTCATGAGCCGGGGAATACGCCCACCG
TGTGCACGTGGAAACACGTACATATACCGACAGTGTTCTGGTCAAAATGA
CAGTATTGCATTATTTTGCGTTGACATTCCATCGTCAGCACGACACGACA
GATTCCAATTCTTTGTTCGCCGGCTACGTTCGACGGTACGACAAGTTTGT
GAACCCGCGCTGGCGGGCGTTGCCCCTGGTGTTCGCATGTTTGGTGCTTC
CTCAGACAATCATCGGTGAAGTTTCCCAAGAAACGGAGGTTTACTTCTGC
GGTGGTGGGGGCGTCAACGCGCCTCTTTGCGAGACGTGCGCTAGGCGTGG
CATCAAGTACGTCGGCAGATCCGTCCAGTGA back to topCoding sequence (CDS) from alignment at Scaffold_420:166485..168815+ >EsuBft1227_3a-0001 ID=EsuBft1227_3a-0001|Name=EsuBft1227_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=621bp|location=Sequence derived from alignment at Scaffold_420:166485..168815+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTCACATTCATCTTGAGCATCTTCCGTGACCCCGTAACTTCGAG
CATCCCCGAACTTGAGGCGGCTCAGCGGAACCCAACGTTTCAGCTTCGCA
CGTTCGGGCCCTACCGTTCAGAGTACGGCCGCCTGGTGGAGTTCCCACAC
TTGCCCCCCCTGCTGGGCCAACAACATTGTGCCATTGCGGCCGGTTTCGG
TGTATACCATTCCTCTGCTAGCCTGGCACTGCTTCAGTTCGTTACCAACA
CCCTTCTCGCCGAGCGGTCCCCCGGGATTCACATCCAGACCGCTCTGACA
CGCCACGAAGATGTTCAGATTGTTGGTGACACCAGCGGCCCCGAGCCTGA
GCTGGTCATGGGTCACCTGGACATCAAGCACGACACGACAGATTCCAATT
CTTTGTTCGCCGGCTACGTTCGACGGTACGACAAGTTTGTGAACCCGCGC
TGGCGGGCGTTGCCCCTGGTGTTCGCATGTTTGGTGCTTCCTCAGACAAT
CATCGGTGAAGTTTCCCAAGAAACGGAGGTTTACTTCTGCGGTGGTGGGG
GCGTCAACGCGCCTCTTTGCGAGACGTGCGCTAGGCGTGGCATCAAGTAC
GTCGGCAGATCCGTCCAGTGA back to top
|