EsuBft1227_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1227_2a-0001
Unique NameEsuBft1227_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:163772..164954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1227_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length40
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_2aEsuBft1227_2aEctocarpus subulatus male Bft15bgeneScaffold_420 163772..164954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_2a-0001EsuBft1227_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 163772..164014 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_2a-0001-exonagat-exon-83425Ectocarpus subulatus male Bft15bexonScaffold_420 163772..163776 +
EsuBft1227_2a-0001-exonagat-exon-83424Ectocarpus subulatus male Bft15bexonScaffold_420 163894..164044 +
EsuBft1227_2a-0001-exonEsuBft1227_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 164710..164954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_2a-0001-cdsEsuBft1227_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 163772..163776 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_2a-0001-exonagat-three_prime_utr-2142Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_420 164015..164044 +
EsuBft1227_2a-0001-exonagat-three_prime_utr-2143Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_420 164710..164954 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1227_2a-0001 ID=EsuBft1227_2a-0001|Name=EsuBft1227_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=401bp|location=Sequence derived from alignment at Scaffold_420:163772..164954+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCTGCCGCTCATGAATTCAGAAGAGAGAGTCTACCAGGGCAAGG
AGCAGAAGGCGAGCTTGAGTGTCCGGTTACCAGTGCGTTGACAGAGTTCG
AAGCGGTGGTTGGTTCCAGCAAGTGAGTGCAGAAGTACGGTCGAGCAGCA
GCAGCATGTTGATCGGCTTGAGTTGCGTGCAGCAGCGCGCAGGATCAACG
ACAAAGTTTCCTCTTCAAAGCGTCATCCATCATCCTCGGTCTTCGAGTCT
TTGATCTAGCATCTTCGGCGACATCCGTCCGAGACATAGAGCAACCCACT
GACAAGAACCTCGAACCTAGCACAAGAACCGTTAGTGTAGAGCCACATCG
CTCTGCATTGGATTGGTTGATTGGGTCATCAGCAGAACCCGAATACCAAG
T
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protein sequence of EsuBft1227_2a-0001

>EsuBft1227_2 ID=EsuBft1227_2|Name=EsuBft1227_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=41bp
MCAAAHEFRRESLPGQGAEGELECPVTSALTEFEAVVGSSK
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mRNA from alignment at Scaffold_420:163772..164954+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1227_2a-0001 ID=EsuBft1227_2a-0001|Name=EsuBft1227_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1183bp|location=Sequence derived from alignment at Scaffold_420:163772..164954+ (Ectocarpus subulatus male Bft15b)
ATGTGGTACGAAGTAGGCTCGCTTCAGGGTTGTTTGGGTTCGGTCCCCGC
TTTGCGCCGCTTTGCGGCGGAATTGGCATATTTCTGTGGACGTACGTGAA
TGATGTCGTGCAGCAGCAGCAGCGCTGCCGCTCATGAATTCAGAAGAGAG
AGTCTACCAGGGCAAGGAGCAGAAGGCGAGCTTGAGTGTCCGGTTACCAG
TGCGTTGACAGAGTTCGAAGCGGTGGTTGGTTCCAGCAAGTGAGTGCAGA
AGTACGGTCGAGCAGCAGCAGCAGTGTTGATCGGCTTGAGTTGAGTACAG
CAGCGAGCAGGATCAACGACAAAGTTTCCTCTTCAAAGCACCATCTATCA
TCCTCGGACTTTTGAGTCTTTGATCTATTATCTCCGGCAACAACCGTCCG
AGACATAGAGCAACCCACGGACAAGAACNACAGGGTTTTCGCACGATTGA
GAGCCAAGTTTCCGATTGAGAGCGAAAACCAAAAAAAATCGAAATTCGGG
TCCAGACGCCTCCCGTCATTTCTCGGGAAGCAGGGGACGGGCTCTTCCGA
AAAGCGGCGCTAATTGAAGCTCTCTTCAGCAGCTTCGCGTGCATATGCGT
GTCACTGCGATCGGCTGCAGCAGCGAGGAGCTACGCACGTTGCTAGATTT
CCCCAGATTGGCTATTCCTGCCCGAAACTGTTTCAGGGCGCCGTCGCCTG
GCGCGGTAGGCCCTCCCGTAGCTTCTGCTCCGCGGTGTAGCTCCACAACG
CGAGACACCCGCAGGATGACCCGGGTATCGGCTTGTAGCTATGGGCATGC
CCGTCAATCCAAGCCGCACAGCAAGCTCTACCGCTCAGCAGTAGACAAGC
TACATCGTATCGCACGATCTCGCTCTCAATCAGATACTTCGCTCTCAATC
GTGCGAATATGTTGTTAAGTACGGTCAAGCAGCAGCAGTGTTGATCGGCT
TGAGTTGCGTGCAGCAGCGCGCAGGATCAACGACAAAGTTTCCTCTTCAA
AGCGTCATCCATCATCCTCGGTCTTCGAGTCTTTGATCTAGCATCTTCGG
CGACATCCGTCCGAGACATAGAGCAACCCACTGACAAGAACCTCGAACCT
AGCACAAGAACCGTTAGTGTAGAGCCACATCGCTCTGCATTGGATTGGTT
GATTGGGTCATCAGCAGAACCCGAATACCAAGT
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Coding sequence (CDS) from alignment at Scaffold_420:163772..164954+

>EsuBft1227_2a-0001 ID=EsuBft1227_2a-0001|Name=EsuBft1227_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=126bp|location=Sequence derived from alignment at Scaffold_420:163772..164954+ (Ectocarpus subulatus male Bft15b)
ATGTGCGCTGCCGCTCATGAATTCAGAAGAGAGAGTCTACCAGGGCAAGG
AGCAGAAGGCGAGCTTGAGTGTCCGGTTACCAGTGCGTTGACAGAGTTCG
AAGCGGTGGTTGGTTCCAGCAAGTGA
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