EsuBft1222_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1222_8a-0001
Unique NameEsuBft1222_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:245490..249321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4558.Sb07g028153.1
ProteomeIdEsuBft1222_8
Protein domainsIPR001584
Protein domainsPTHR11439
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl35493|Streptophyta
Length3538
Hectar predicted targeting categoryother localisation
Evalue6.88e-19
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2QC@4447|Liliopsida,3IMWS@38820|Poales
Date last modified2016-06-14
Date creation2016-06-14
DescriptionGAG-pre-integrase domain
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_8aEsuBft1222_8aEctocarpus subulatus male Bft15bgeneScaffold_195 245490..249321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_8a-0001EsuBft1222_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 247076..248938 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_8a-0001-exonEsuBft1222_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 245490..247702 -
EsuBft1222_8a-0001-exonagat-exon-44627Ectocarpus subulatus male Bft15bexonScaffold_195 247752..248184 -
EsuBft1222_8a-0001-exonagat-exon-44626Ectocarpus subulatus male Bft15bexonScaffold_195 248293..248411 -
EsuBft1222_8a-0001-exonagat-exon-44625Ectocarpus subulatus male Bft15bexonScaffold_195 248549..249321 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_8a-0001-exonagat-three_prime_utr-2118Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 245490..247075 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_8a-0001-cdsEsuBft1222_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 247076..247702 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_8a-0001-exonagat-five_prime_utr-1395Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 248939..249321 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1222_8a-0001 ID=EsuBft1222_8a-0001|Name=EsuBft1222_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3538bp|location=Sequence derived from alignment at Scaffold_195:245490..249321- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTACCTCTGTGGTGAACAAACAGCAAAGTGTTGCGCGGGAAGCCTCCATT
TAGAATTCGAGCAAATACTTCTGCGGCAGACAGGAGGGAAGACTGTGTAT
CAACAGCGAAAGTCGACCGGGAACCGTAGTCCTATCCACCGATTCTCTAT
CTAAGTGAGGAAAGGGTATCAGGAGCGGGGTCGCGAATTGGCCTACAACC
GGAGCTCTATTCACCAACTTTCTATCTAAGTGAGACAAGGGTTTCAGAAG
CGGGGTCACGAATCGGCAACCGGAGTCTTCTATATCAAAAGAAGGAGCGG
GGCTGGAAGAATCGCAGAGACAGATAGCTGAGTAAATACACAACAATAAT
ATTCAAGACGAGATCATCAGGATAAAACCAGAAATGGAAGCAACATCGGG
ACCTGGAGGCGGAGGTAGCATGTGGAGTGATGGATCCACAACCCTGGCCA
ACGTCATCAGAGGACTCCCCATGTTCGATGGAATGAAGCCAGAGGACTTC
AACGACTGGATGAAGAAATTGGGTGTAGTCGTCGGTGTTACTCGGAGGGA
CATCATGCCACTTCTCAAGGGAATGCGCAGGCCTGATCCCTCGGACACCA
CCTTCGCCGCATACGAGAGAGCAAACGAAGACCTCTACGCAATCCTATTC
TGCCTCGTCGAACTGCCGGCTGCACTAACCGTACACAAGCACGAAGACGA
CACCGGCCTTAGCGGCGACGGGCAGGCAGCATTCGCGGAACTAAAGGCCA
ACTACAATCGAGTGACAGATGAAGACATCTGTGTGCAAGGTTTCTCCGAG
GACTACAAGGACATCAAGATGATGGTTTTCCGCGACCCATCATTCGACGT
ACAACAGATGCAAGCCACCATGCGCAACATCTTCCATGACGAGAGGAACT
GTCCCAATCGCCAGCGGAAGGGCCATAGGGCAAAGAAGACGAAGCCTGCG
GGAGCAACCAAGTGGTGCTCCGTCCATAACACCACTACACACTCCGACGA
AGAGTGTTACAACCAAGGAGCCAAGCGACCAGAACGCACGGGCAAGGCCT
TTTCTGCATGCACACACTGCGTGCACTGCTCAACCCAGTCAAGAGACATA
CACGCCAAGCCTACCACAACAGAAATTCCCAAAGAAACAGAGAAGACCGA
GAAGGCAGAGATCGACTTCTCTTACGACGAAGATGCATTCAAGGGTGGAT
TCATGTACCATGCTACATGCAGCAAGGGAAGCGGACGCACTTTCACGACA
ACTGCAACTGGGGCTTCAGCACTGGTGGATTCTGGACCCTCTGAGACCAT
GTTCGACAACCGCCTCATCTCGAATGAGAAAGCCAACTACGAGGCACTAC
CACTGGGATCCTACACTGCACCATCAACCAGAATGCGGGAAGTGTACCTA
CTGCGCGACAGGACCGAAACCACGCAAGCTCTGCACGCCTACAACATGCA
AGTAGCACCTGAAGGCTACCGCATCGAGGTTCTACGCTGTGACAAAGGGG
GAGGGAACACTGGGGAAGAAATGCGCAACGACTGTAGGGAGTCTGCGATC
AAGCTGGAATTCGCCGCGACCAACACGCCCCAAGAAATCGGAGTGTCAGA
AAGGGATGGCCAGACACTTGCGGCTGTGACTCGAGCTCTACTGCGCGATG
GAGACTTCCCAAAACACATGTGGGGGGAGCTCATGATGACTGCAGCATAC
CTGACCAACAGGACCCCACACGCGGCGCTAGGGGGAGCCACGCCGTATTC
CAAGATGTACAACACAACCCCGGACCTTTCTCGACTTCGTGCCATCGGCG
CCCCCGCGTTCGTTCATCACAAGCGATACAAGAAGAAAGTGCGCTCACTT
TCGTTTCCGCTGACCGTTGATGATCTGCCAAATCTCCGAAGCCAGATTTC
CGCTCGAAGTCCACAGACGGATGTTGTAGTCCACAGCAGTAGGATGTCTT
GACCTCCGTCGTGACGTCCGCAGGTCCTAGTGTTCGCGTAAAGCGAGGCT
CATAACCTCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNGTTTAGTAGAGTAGAGTATCTGGAGTAGTACT
AAACCTACTATTGGGCCGAGTAGAGTATCGGGAGTAGTACTAAACCTAAG
AGTAGGTTGAGTAGAGTATCGAGACTTCTACTAAAGGT
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protein sequence of EsuBft1222_8a-0001

>EsuBft1222_8 ID=EsuBft1222_8|Name=EsuBft1222_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=522bp
MEATSGPGGGGSMWSDGSTTLANVIRGLPMFDGMKPEDFNDWMKKLGVVV
GVTRRDIMPLLKGMRRPDPSDTTFAAYERANEDLYAILFCLVELPAALTV
HKHEDDTGLSGDGQAAFAELKANYNRVTDEDICVQGFSEDYKDIKMMVFR
DPSFDVQQMQATMRNIFHDERNCPNRQRKGHRAKKTKPAGATKWCSVHNT
TTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIHAKPTTTEIPK
ETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGASALVDS
GPSETMFDNRLISNEKANYEALPLGSYTAPSTRMREVYLLRDRTETTQAL
HAYNMQVAPEGYRIEVLRCDKGGGNTGEEMRNDCRESAIKLEFAATNTPQ
EIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALG
GATPYSKMYNTTPDLSRLRAIGAPAFVHHKRYKKKVRSLSFPLTVDDLPN
LRSQISARSPQTDVVVHSSRMS
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mRNA from alignment at Scaffold_195:245490..249321-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1222_8a-0001 ID=EsuBft1222_8a-0001|Name=EsuBft1222_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3832bp|location=Sequence derived from alignment at Scaffold_195:245490..249321- (Ectocarpus subulatus male Bft15b)
GTACCTCTGTGGTGAACAAACAGCAAAGTGTTGCGCGGGAAGCCTCCATT
TAGAATTCGAGCAAATACTTCTGCGGCAGACAGGAGGGAAGACTGTGTAT
CAACAGCGAAAGTCGACCGGGAACCGTAGTCCTATCCACCGATTCTCTAT
CTAAGTGAGGAAAGGGTATCAGGAGCGGGGTCGCGAATTGGCCTACAACC
GGAGCTCTATTCACCAACTTTCTATCTAAGTGAGACAAGGGTTTCAGAAG
CGGGGTCACGAATCGGCAACCGGAGTCTTCTATATCAAAAGAAGGAGCGG
GGCTGGAAGAATCGCAGAGACAGATAGCTGAGTAAATACACAACAATAAT
ATTCAAGACGAGATCATCAGGATAAAACCAGAAATGGAAGCAACATCGGG
ACCTGGAGGCGGAGGTAGCATGTGGAGTGATGGATCCACAACCCTGGCCA
ACGTCATCAGAGGACTCCCCATGTTCGATGGAATGAAGCCAGAGGACTTC
AACGACTGGATGAAGAAATTGGGTGTAGTCGTCGGTGTTACTCGGAGGGA
CATCATGCCACTTCTCAAGGGAATGCGCAGGCCTGATCCCTCGGACACCA
CCTTCGCCGCATACGAGAGAGCAAACGAAGACCTCTACGCAATCCTATTC
TGCCTCGTCGAACTGCCGGCTGCACTAACCGTACACAAGCACGAAGACGA
CACCGGCCTTAGCGGCGACGGGCAGGCAGCATTCGCGGAACTAAAGGCCA
ACTACAATCGAGTGACAGATGAAGTGATCAGGGCTAAATGGAACGACCTG
GAAGGACGATGGAGCCAGGAGAGAACCCGGACGTTTTTTTCAACAAGGAA
CACCGCCTCCGCTCTCAACTAGAGTAAATGGGGGAAACCATCTCCGATCG
CCGCTTCAAGGACATCTGTGTGCAAGGTTTCTCCGAGGACTACAAGGACA
TCAAGATGATGGTTTTCCGCGACCCATCATTCGACGTACAACAGATGCAA
GCCACCATGCGCAACATCTTCCATGACGAGTAAATGCGCAAGAGAACCAA
GGGCCAAATCGCTGGACGCGGATTCTCCATGGCTACCAACACATCTGGCC
CCATCTGCTTCGAGTGCAACGAACCGGGACATGTCAGGAGGAACTGTCCC
AATCGCCAGCGGAAGGGCCATAGGGCAAAGAAGACGAAGCCTGCGGGAGC
AACCAAGTGGTGCTCCGTCCATAACACCACTACACACTCCGACGAAGAGT
GTTACAACCAAGGAGCCAAGCGACCAGAACGCACGGGCAAGGCCTTTTCT
GCATGCACACACTGCGTGCACTGCTCAACCCAGTCAAGAGACATACACGC
CAAGCCTACCACAACAGAAATTCCCAAAGAAACAGAGAAGACCGAGAAGG
CAGAGATCGACTTCTCTTACGACGAAGATGCATTCAAGGGTGGATTCATG
TACCATGCTACATGCAGCAAGGGAAGCGGACGCACTTTCACGACAACTGC
AACTGGGGCTTCAGCACTGGTGGATTCTGGACCCTCTGAGACCATGTTCG
ACAACCGCCTCATCTCGAATGTACGTTTCGAAGAAGAACGCCCAACGCCC
AAGATCATCGACGTTGCAGGAGAAAGCCAACTACGAGGCACTACCACTGG
GATCCTACACTGCACCATCAACCAGAATGCGGGAAGTGTACCTACTGCGC
GACAGGACCGAAACCACGCAAGCTCTGCACGCCTACAACATGCAAGTAGC
ACCTGAAGGCTACCGCATCGAGGTTCTACGCTGTGACAAAGGGGGAGGGA
ACACTGGGGAAGAAATGCGCAACGACTGTAGGGAGTCTGCGATCAAGCTG
GAATTCGCCGCGACCAACACGCCCCAAGAAATCGGAGTGTCAGAAAGGGA
TGGCCAGACACTTGCGGCTGTGACTCGAGCTCTACTGCGCGATGGAGACT
TCCCAAAACACATGTGGGGGGAGCTCATGATGACTGCAGCATACCTGACC
AACAGGACCCCACACGCGGCGCTAGGGGGAGCCACGCCGTATTCCAAGAT
GTACAACACAACCCCGGACCTTTCTCGACTTCGTGCCATCGGCGCCCCCG
CGTTCGTTCATCACAAGCGATACAAGAAGAAAGTGCGCTCACTTTCGTTT
CCGCTGACCGTTGATGATCTGCCAAATCTCCGAAGCCAGATTTCCGCTCG
AAGTCCACAGACGGATGTTGTAGTCCACAGCAGTAGGATGTCTTGACCTC
CGTCGTGACGTCCGCAGGTCCTAGTGTTCGCGTAAAGCGAGGCTCATAAC
CTCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNGTTTAGTAGAGTAGAGTATCTGGAGTAGTACTAAACCT
ACTATTGGGCCGAGTAGAGTATCGGGAGTAGTACTAAACCTAAGAGTAGG
TTGAGTAGAGTATCGAGACTTCTACTAAAGGT
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Coding sequence (CDS) from alignment at Scaffold_195:245490..249321-

>EsuBft1222_8a-0001 ID=EsuBft1222_8a-0001|Name=EsuBft1222_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1569bp|location=Sequence derived from alignment at Scaffold_195:245490..249321- (Ectocarpus subulatus male Bft15b)
ATGGAAGCAACATCGGGACCTGGAGGCGGAGGTAGCATGTGGAGTGATGG
ATCCACAACCCTGGCCAACGTCATCAGAGGACTCCCCATGTTCGATGGAA
TGAAGCCAGAGGACTTCAACGACTGGATGAAGAAATTGGGTGTAGTCGTC
GGTGTTACTCGGAGGGACATCATGCCACTTCTCAAGGGAATGCGCAGGCC
TGATCCCTCGGACACCACCTTCGCCGCATACGAGAGAGCAAACGAAGACC
TCTACGCAATCCTATTCTGCCTCGTCGAACTGCCGGCTGCACTAACCGTA
CACAAGCACGAAGACGACACCGGCCTTAGCGGCGACGGGCAGGCAGCATT
CGCGGAACTAAAGGCCAACTACAATCGAGTGACAGATGAAGACATCTGTG
TGCAAGGTTTCTCCGAGGACTACAAGGACATCAAGATGATGGTTTTCCGC
GACCCATCATTCGACGTACAACAGATGCAAGCCACCATGCGCAACATCTT
CCATGACGAGAGGAACTGTCCCAATCGCCAGCGGAAGGGCCATAGGGCAA
AGAAGACGAAGCCTGCGGGAGCAACCAAGTGGTGCTCCGTCCATAACACC
ACTACACACTCCGACGAAGAGTGTTACAACCAAGGAGCCAAGCGACCAGA
ACGCACGGGCAAGGCCTTTTCTGCATGCACACACTGCGTGCACTGCTCAA
CCCAGTCAAGAGACATACACGCCAAGCCTACCACAACAGAAATTCCCAAA
GAAACAGAGAAGACCGAGAAGGCAGAGATCGACTTCTCTTACGACGAAGA
TGCATTCAAGGGTGGATTCATGTACCATGCTACATGCAGCAAGGGAAGCG
GACGCACTTTCACGACAACTGCAACTGGGGCTTCAGCACTGGTGGATTCT
GGACCCTCTGAGACCATGTTCGACAACCGCCTCATCTCGAATGAGAAAGC
CAACTACGAGGCACTACCACTGGGATCCTACACTGCACCATCAACCAGAA
TGCGGGAAGTGTACCTACTGCGCGACAGGACCGAAACCACGCAAGCTCTG
CACGCCTACAACATGCAAGTAGCACCTGAAGGCTACCGCATCGAGGTTCT
ACGCTGTGACAAAGGGGGAGGGAACACTGGGGAAGAAATGCGCAACGACT
GTAGGGAGTCTGCGATCAAGCTGGAATTCGCCGCGACCAACACGCCCCAA
GAAATCGGAGTGTCAGAAAGGGATGGCCAGACACTTGCGGCTGTGACTCG
AGCTCTACTGCGCGATGGAGACTTCCCAAAACACATGTGGGGGGAGCTCA
TGATGACTGCAGCATACCTGACCAACAGGACCCCACACGCGGCGCTAGGG
GGAGCCACGCCGTATTCCAAGATGTACAACACAACCCCGGACCTTTCTCG
ACTTCGTGCCATCGGCGCCCCCGCGTTCGTTCATCACAAGCGATACAAGA
AGAAAGTGCGCTCACTTTCGTTTCCGCTGACCGTTGATGATCTGCCAAAT
CTCCGAAGCCAGATTTCCGCTCGAAGTCCACAGACGGATGTTGTAGTCCA
CAGCAGTAGGATGTCTTGA
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