EsuBft1222_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1222_7a-0001
Unique NameEsuBft1222_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:251256..252129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1222_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length58
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_7aEsuBft1222_7aEctocarpus subulatus male Bft15bgeneScaffold_195 251256..252129 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_7a-0001-exonEsuBft1222_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 251256..251310 +
EsuBft1222_7a-0001-exonagat-exon-44624Ectocarpus subulatus male Bft15bexonScaffold_195 251603..252129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_7a-0001-cdsEsuBft1222_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 251256..251310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_7a-0001EsuBft1222_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 251256..252129 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1222_7a-0001 ID=EsuBft1222_7a-0001|Name=EsuBft1222_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=582bp|location=Sequence derived from alignment at Scaffold_195:251256..252129+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATCACCGACTCGCTCGACGCCGTGGGCAACTACTCATCCGAGCC
CGCATGGGTCGGTTTTGGTGTGGCCGAACACTCCGTCAAAGCGTTGCAGA
GGGCGCTTTCTAGCGACTCTCTGGGGGGGCAGTTGGACAAGGATGGACAG
CTACCTGGCTACGGGGTCTCCTTGAACTTCAACCGGGAACGTTCGTTTGG
TGAATTCGGTCACTTCTACGACGGCCAGAGAGTAGGTCTTTGGCTAGGCC
CAGACGGGCCGCACGAGGGCAACCACCAAGGGTCCTGCCAAATGAAGTAT
GGCGGAGTGTCCCGGTGCCCGCAGCTCACGGGCGTCAACTGCAACGTTCA
CGAACAAAACCACTCGAAGAAGACCAAGCACCTACCCAGCGTCAGCGGCA
TGGGGTTCGACACATTCACTTTAAACATAACCTTGATCAACGAGTTGGAA
AATGTAAAATCAACCGCAAGACATGCAGCGTGGCAGTCTAAAGTGCCACC
GGACACCCCCACGAACATCTGCATGCATGCCGTAAGGAAGTGTGGACTTG
CGGTCGCTGCTTCTGCAGCAAGCCTCTTATGA
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protein sequence of EsuBft1222_7a-0001

>EsuBft1222_7 ID=EsuBft1222_7|Name=EsuBft1222_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=193bp
MFITDSLDAVGNYSSEPAWVGFGVAEHSVKALQRALSSDSLGGQLDKDGQ
LPGYGVSLNFNRERSFGEFGHFYDGQRVGLWLGPDGPHEGNHQGSCQMKY
GGVSRCPQLTGVNCNVHEQNHSKKTKHLPSVSGMGFDTFTLNITLINELE
NVKSTARHAAWQSKVPPDTPTNICMHAVRKCGLAVAASAASLL
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mRNA from alignment at Scaffold_195:251256..252129+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1222_7a-0001 ID=EsuBft1222_7a-0001|Name=EsuBft1222_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=874bp|location=Sequence derived from alignment at Scaffold_195:251256..252129+ (Ectocarpus subulatus male Bft15b)
ATGTTCATCACCGACTCGCTCGACGCCGTGGGCAACTACTCATCCGAGCC
CGCATGTAAGAGAACGTATCATTGTCAACGAAGTTTTTTTTTCTTTCGGA
TCGTTGCAATGTGCTAGCGGCACCATGTTCCTCGTATGTAGGAATGACGC
TTTTCTGTCCCGCCTTCTAAATAATGTACCGCCCCCCCTACCGTCCACCC
CCGGGAGTGTCAGTCCACAACCTTACGTTGCTCTGTGAATGCACACACAT
GGCTCCGTGAACACTCGCCACACTCTTTTTATTTGCTTATTCCCCCGTTC
CGTTGTGTTCCCCAATACCATTAAAACAGACCGTTTAGTCCAGGCAGGGG
TCGGTTTTGGTGTGGCCGAACACTCCGTCAAAGCGTTGCAGAGGGCGCTT
TCTAGCGACTCTCTGGGGGGGCAGTTGGACAAGGATGGACAGCTACCTGG
CTACGGGGTCTCCTTGAACTTCAACCGGGAACGTTCGTTTGGTGAATTCG
GTCACTTCTACGACGGCCAGAGAGTAGGTCTTTGGCTAGGCCCAGACGGG
CCGCACGAGGGCAACCACCAAGGGTCCTGCCAAATGAAGTATGGCGGAGT
GTCCCGGTGCCCGCAGCTCACGGGCGTCAACTGCAACGTTCACGAACAAA
ACCACTCGAAGAAGACCAAGCACCTACCCAGCGTCAGCGGCATGGGGTTC
GACACATTCACTTTAAACATAACCTTGATCAACGAGTTGGAAAATGTAAA
ATCAACCGCAAGACATGCAGCGTGGCAGTCTAAAGTGCCACCGGACACCC
CCACGAACATCTGCATGCATGCCGTAAGGAAGTGTGGACTTGCGGTCGCT
GCTTCTGCAGCAAGCCTCTTATGA
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Coding sequence (CDS) from alignment at Scaffold_195:251256..252129+

>EsuBft1222_7a-0001 ID=EsuBft1222_7a-0001|Name=EsuBft1222_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=582bp|location=Sequence derived from alignment at Scaffold_195:251256..252129+ (Ectocarpus subulatus male Bft15b)
ATGTTCATCACCGACTCGCTCGACGCCGTGGGCAACTACTCATCCGAGCC
CGCATGGGTCGGTTTTGGTGTGGCCGAACACTCCGTCAAAGCGTTGCAGA
GGGCGCTTTCTAGCGACTCTCTGGGGGGGCAGTTGGACAAGGATGGACAG
CTACCTGGCTACGGGGTCTCCTTGAACTTCAACCGGGAACGTTCGTTTGG
TGAATTCGGTCACTTCTACGACGGCCAGAGAGTAGGTCTTTGGCTAGGCC
CAGACGGGCCGCACGAGGGCAACCACCAAGGGTCCTGCCAAATGAAGTAT
GGCGGAGTGTCCCGGTGCCCGCAGCTCACGGGCGTCAACTGCAACGTTCA
CGAACAAAACCACTCGAAGAAGACCAAGCACCTACCCAGCGTCAGCGGCA
TGGGGTTCGACACATTCACTTTAAACATAACCTTGATCAACGAGTTGGAA
AATGTAAAATCAACCGCAAGACATGCAGCGTGGCAGTCTAAAGTGCCACC
GGACACCCCCACGAACATCTGCATGCATGCCGTAAGGAAGTGTGGACTTG
CGGTCGCTGCTTCTGCAGCAAGCCTCTTATGA
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