EsuBft1222_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1222_5a-0001
Unique NameEsuBft1222_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:264104..267910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6334.EFV51170
ProteomeIdEsuBft1222_5
Protein domainsPTHR24559
Protein domainsIPR012337
Protein domainsIPR001584
Ownerapollo_admin@sb-roscoff.fr
Notetransposon ty3-i gag-pol polyprotein os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:ty3b-i pe:3 sv:2 [Automatic annotation]
Nb exon4
Max annot lvl33208|Metazoa
Length2196
Hectar predicted targeting categoryother localisation
Evalue8.3e-16
EggNOG OGsCOG2801@1|root,2RTAR@2759|Eukaryota,3AJMR@33154|Opisthokonta,3BZTT@33208|Metazoa,3DG7F@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionIntegrase core domain
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_5aEsuBft1222_5aEctocarpus subulatus male Bft15bgeneScaffold_195 264104..267910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_5a-0001EsuBft1222_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 265344..267910 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_5a-0001-exonagat-exon-44621Ectocarpus subulatus male Bft15bexonScaffold_195 264104..264651 -
EsuBft1222_5a-0001-exonagat-exon-44619Ectocarpus subulatus male Bft15bexonScaffold_195 265235..265395 -
EsuBft1222_5a-0001-exonagat-exon-44620Ectocarpus subulatus male Bft15bexonScaffold_195 265629..266320 -
EsuBft1222_5a-0001-exonagat-exon-44622Ectocarpus subulatus male Bft15bexonScaffold_195 266594..266616 -
EsuBft1222_5a-0001-exonEsuBft1222_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 267139..267910 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_5a-0001-exonagat-three_prime_utr-2115Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 264104..264651 -
EsuBft1222_5a-0001-exonagat-three_prime_utr-2116Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 265235..265343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1222_5a-0001-cdsEsuBft1222_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 265344..265395 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1222_5a-0001 ID=EsuBft1222_5a-0001|Name=EsuBft1222_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2196bp|location=Sequence derived from alignment at Scaffold_195:264104..267910- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGTGGACAGCGCATCGCGGTGGCAACGGGGGTACGGGATGCGGGC
AAAGAGCGACACCCTGAAAATCGTGCAGCGGTTCCTCGCCGACATGAACG
GCATGGGCACTCCGGGGTGTTTCCGCATGGACAACGGCGGCGAGTTCACT
GGCTCCGCATTCACCTCGTTCTGCGACGCTGCTGGCATTCGGCGCGAGTA
CACCGCCCCCGACACCCCCAAGCAAAACGCGGTGGTCGAGAGCGCCATAT
GGCGCGCCATGAAGGGGGGCCACGCCGCGCGCCGCCACATCCTCGCCATG
GGCCACGTCGACCTCTCCTCCATCCCCAACGTCGGCGTCAGCGGACATCG
CCTGTGGCTCGCGTCGGCGCTGTGGGCATCCGCCTGCTTCAACCGCTCCG
CGACGAAGGCCAACCTGGGCTGGATGTCGCCGTTTGAGGCGTTCTTCGGC
TGGAAGCCGCCCCTCACCGTCGTCCCTTTTTTCCAGGAAGGGATGATGCG
CGTGAAGCGGGCCACGCAGGCTGACGTCCAATCTGCGCGGTGCTTCTTCC
TGCACGGTGCCAACAACCACTCGACGTCTACCGCCGTCGTTCTTCGCGCT
GACACCGGTCGCCTCGCCCTCACCAACAACGTCGTGTGGGTCAACCGCCG
GGCAGGGGCGCCGGCGCAGGTGCCGGGCATCGGGGGGAGTCTTCGGTCAC
CGCGTCGCCCTCGCCGGCCACCGCCGTACCTGCGGCCGATGCCGCACCGC
TGCCGCCCCCGCCATCAAGGACGGGGGCTATTCGATACATTGGGGAAGCT
CTCCATTGCGATCTACGAGGTGATGAAGATCAAGAAGGTCACCACCAGCT
CCTACCACCCACAGACCAACGGCGGCACGGATCGCGTCAACCACACGATG
GCCCAGATGCTTGCGGTGGTCGTCAACGAACAGCAAAACGAGTGGGACGT
ACATCTCCCGCACGTTGAGTTTGCCTACAACAATTCCGTGAACCAGTCTA
CTGGATTAGCGCCAAACGAGATCCACATCGGACGCATCCCGCGACTCCCT
CTTTCGGTCTTCGATCATCCCACGGTAGGCGGTCATCAAAGCTTGGCCCG
CGATCAACTCGAGTATTGCAACCTGGCTGTCGATCGCCAGCGCCGGGCCT
ACGAACTTGTCCGTGAGTACAACGCGCTGAAGATTTCGCGAGTCGAACGC
CGAAATTCATCCCTGCTGGACGCCATCCACAAGCTCCCTCAGTTTACCGT
TGGCGGGTGGGCTTGGGTGTACAACACGGCTGCTACGATTCGACAGGGTG
TGAAGAAGGACACGGACCAACAGGTGCTCAAGGCCAAATTCGCACTTTCC
TGGACGGGGCCCTACAAAGTTCTTGCGGTGTGTCCCGCTTCTTCCGACGC
CACTCCGGACGGCAGCCCGTTGGCGCATAAACTCCTCTACCTGGACCTAC
CTTCCGATCTTACCGGCCCAGCAGCTCGATGTCGCGTGGAAACCGTACAT
ATCGAGTGGCTCGGACTCGCGCGGCACAGCGAGAGCTAGCCCCGAATCGT
GGAGAACGCTATTTGCCTCCTGGGGCTGATCTTGTGCTCCACGCGACTTG
GCTTCGTCGTTTCAGCAAATCGCCCCTCCCTGTTGGCGCGCGGCTGTGGC
TCCCCCCGAAGTTTCGTCGGTGGTGTTTGCCTCTGAACACTTGGAAAAAG
AGATCCCCAAGTTCGTCGGTGTTGTTGGCCTCAGGACACTTGGACACCGA
GTTCCCCGCGTTTTCCTGGTTCGCCTGTTTGCCAACTAATCTTAATTGTG
GAAAAGAGGGTTTCGTCCTCGACAGACGTTAGGGAGTTTCAACCTTTGTG
AAGGTGGTCTCCACATTACCCCCCCCTTTTTCGAGGCTTCTTGTTTGCTA
GGCAAGAGAAGTCTTCTTGAGGTAACCGCAACCCGACCGGCTGGCGGCGA
GTAGAACCACCTTTTTCCAACAATCTTCTGTGCGTGTGTGCGGATGCGCC
ACTTCCGCCACGCATTGCCAGAAGTTTCTAGTTCGATAGACAGTACATCG
TTTCTCGGTCCGCCCACCGTTTTTCTTTTTTCCGTACTCCGGAAGAAAAT
TAGGTGATGAGCAGCGGGTTTTGAAACCGTGTCTTTTGCAACCAAAAGCA
AACACGCTGACATCTCTTCGTCGACGCCATTGTGGAAAAGAGGATT
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protein sequence of EsuBft1222_5a-0001

>EsuBft1222_5 ID=EsuBft1222_5|Name=EsuBft1222_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=512bp
MFVDSASRWQRGYGMRAKSDTLKIVQRFLADMNGMGTPGCFRMDNGGEFT
GSAFTSFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHILAM
GHVDLSSIPNVGVSGHRLWLASALWASACFNRSATKANLGWMSPFEAFFG
WKPPLTVVPFFQEGMMRVKRATQADVQSARCFFLHGANNHSTSTAVVLRA
DTGRLALTNNVVWVNRRAGAPAQVPGIGGSLRSPRRPRRPPPYLRPMPHR
CRPRHQGRGLFDTLGKLSIAIYEVMKIKKVTTSSYHPQTNGGTDRVNHTM
AQMLAVVVNEQQNEWDVHLPHVEFAYNNSVNQSTGLAPNEIHIGRIPRLP
LSVFDHPTVGGHQSLARDQLEYCNLAVDRQRRAYELVREYNALKISRVER
RNSSLLDAIHKLPQFTVGGWAWVYNTAATIRQGVKKDTDQQVLKAKFALS
WTGPYKVLAVCPASSDATPDGSPLAHKLLYLDLPSDLTGPAARCRVETVH
IEWLGLARHSES
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mRNA from alignment at Scaffold_195:264104..267910-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1222_5a-0001 ID=EsuBft1222_5a-0001|Name=EsuBft1222_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3807bp|location=Sequence derived from alignment at Scaffold_195:264104..267910- (Ectocarpus subulatus male Bft15b)
ATGTTCGTGGACAGCGCATCGCGGTGGCAACGGGGGTACGGGATGCGGGC
AAAGAGCGACACCCTGAAAATCGTGCAGCGGTTCCTCGCCGACATGAACG
GCATGGGCACTCCGGGGTGTTTCCGCATGGACAACGGCGGCGAGTTCACT
GGCTCCGCATTCACCTCGTTCTGCGACGCTGCTGGCATTCGGCGCGAGTA
CACCGCCCCCGACACCCCCAAGCAAAACGCGGTGGTCGAGAGCGCCATAT
GGCGCGCCATGAAGGGGGGCCACGCCGCGCGCCGCCACATCCTCGCCATG
GGCCACGTCGACCTCTCCTCCATCCCCAACGTCGGCGTCAGCGGACATCG
CCTGTGGCTCGCGTCGGCGCTGTGGGCATCCGCCTGCTTCAACCGCTCCG
CGACGAAGGCCAACCTGGGCTGGATGTCGCCGTTTGAGGCGTTCTTCGGC
TGGAAGCCGCCCCTCACCGTCGTCCCTTTTTTCCAGGAAGGGATGATGCG
CGTGAAGCGGGCCACGCAGGCTGACGTCCAATCTGCGCGGTGCTTCTTCC
TGCACGGTGCCAACAACCACTCGACGTCTACCGCCGTCGTTCTTCGCGCT
GACACCGGTCGCCTCGCCCTCACCAACAACGTCGTGTGGGTCAACCGCCG
GGCAGGGGCGCCGGCGCAGGTGCCGGGCATCGGGGGGAGTCTTCGGTCAC
CGCGTCGCCCTCGCCGGCCACCGCCGTACCTGCGGCCGATGCCGCACCGC
TGCCGCCCCCGCCATCAAGGACGTACACCTACATCCCGCCTGCACCAGCG
ACCACCNGATCACGAACTCCAACTCGAAGCACATCGATGTACGCCATCAC
TTTATCAGGGAGCTGGTAGAGAGGAAAGACATTTCAATTACTCATGTGCC
GACGCAATTTCAGCATGCAGATTTCTTGACGAAGGCTATTAGCAAGGAGT
CTTTTGCGTTGCACCGTGACTTTGTGATGAACTTGCAGTGAAGAAAGTGT
TTTGGGGTCGATTCGTATTCTGTAGCGGAGAGAGAAGGAGAGAGCGAGAT
TGGACAAGAGAAAGAGAGAGTCTGATGAAGGTGGTAAGGGTGTTGGAGGT
GTGTTCAGATTTTCTTGTTTGTTTTGGAGGAGTTTTGGTTGTGTTGGAAT
TTTTCTTGTGATCGACTTGGGAGGTTCTTGCATGTTTTGGGAAGGATATT
GGATTTGGATGCTTTGAGAATTTTCTTGTTTGTTTTGGAGAGATGGTAAA
AGAGGAATTTGGTTTTTGCCGAAGCATAAGGAGCATACGAGCAGGGGGGC
TATTCGATACATTGGGGGTACTCGTAGCATAGTATGACGGGTAAGATCTT
CAGTACGTACGTACGGAAATCGCAGTGATGAGATGCGGAAGAATCAGAGA
GATCCGTTTGGTAGTTTGAGCGTGATGAGCGTGACGCGTGCTTGATGCCG
TGACAGATTTACGAGCACGAGCACGCCCCCGAAGAATACAACACGTTTTC
CTATACGTCCCCCCCCTACCACGGCCCGTCATGGCCCATCTGCTCTACAC
TCCCAACACACAGAACTGAGCCACCCGAATCATCGATCAGAAGCTCTCCA
TTGCGATCTACGAGGTGATGAAGATCAAGAAGGTCACCACCAGCTCCTAC
CACCCACAGACCAACGGCGGCACGGATCGCGTCAACCACACGATGGCCCA
GATGCTTGCGGTGGTCGTCAACGAACAGCAAAACGAGTGGGACGTACATC
TCCCGCACGTTGAGTTTGCCTACAACAATTCCGTGAACCAGTCTACTGGA
TTAGCGCCAAACGAGATCCACATCGGACGCATCCCGCGACTCCCTCTTTC
GGTCTTCGATCATCCCACGGTAGGCGGTCATCAAAGCTTGGCCCGCGATC
AACTCGAGTATTGCAACCTGGCTGTCGATCGCCAGCGCCGGGCCTACGAA
CTTGTCCGTGAGTACAACGCGCTGAAGATTTCGCGAGTCGAACGCCGAAA
TTCATCCCTGCTGGACGCCATCCACAAGCTCCCTCAGTTTACCGTTGGCG
GGTGGGCTTGGGTGTACAACACGGCTGCTACGATTCGACAGGGTGTGAAG
AAGGACACGGACCAACAGGTGCTCAAGGCCAAATTCGCACTTTCCTGGAC
GGGGCCCTACAAAGTTCTTGCGGTGTGTCCCGCTTCTTCCGACGCCACTC
CGGACGGCAGCCCGTTGGCGCATAAACTCCTCTACCTGGACCTACCTTCC
GATCTTACCGGCCCAGCAGCTCGATGTCGCGTGTCTGTCCTTCGTTGCAA
GCCCCTGTCGCAATCCGTACGAGACGGACGACTTGCCGCAATCTCTACCC
GCCGAGCTTTCGCGTTATGTTCTGCACCCTTTNGTTCTCGCTGTCCTGCA
CCAGACGCATTGGGTAGGCCTGACTACTCCTTCATGGGAACGGGAGTCCG
ACCTTGATCTATTCCGTCGACACATCCTCTTGTACTGGTCCCGGGAGGTC
TGCCAAAGCAAGCAGGGAAACCGTACATATCGAGTGGCTCGGACTCGCGC
GGCACAGCGAGAGCTAGCCCCGAATCGTGGAGAACGCTATTTGCCTCCTG
GGGCTGATCTTGTGCTCCACGCGACTTGGCTTCGTCGTTTCAGCAAATCG
CCCCTCCCTGTTGGCGCGCGGCTGTGGTAAAAGGCCCGTGATGGATTGTG
GTGGATCGGACGTATTGGTGCTCATCAGGGCGGCTCGTATATCGTTCGAT
TTTTGGATGACCCGGGCCCAAGCGTTCTCCCTCTGCCTGCGCGCCTCTAC
TCAACCGCCTTGGACGCCGTCTGTGGATCATGGTGTTTAGAGAAACATCG
TTCGCGCCCTCCGGGCGACAACCGTGGTCGCACTCCGCTCCTTGCTAACT
CCTTACCGTCGGCTGTTCCCATCGTTTCTTCTTAGCGTCGTCGTTTCCAT
ACACCAGTTGGCCTATTTTGGTCTTTTGTGCCATCCTTCTCGCCGATGTT
TTGATTTTTTTTTTTTCTTTCACCTTGTGCTTTGTTTTGTATTTTTTTGT
TTTTTCTGTCCCGTCTCTTTTCTTTTGTTGGCTTATTTCTTTGTTTTTGG
ACGCTGGGGCAAGCCACCTCAAAGCACGCAGTGTCGAGTGATCCTTCTTC
CTTGTTGCCTGCATTCGTCTGAATCAGTGAACTGCCGCGACCTGGATGTC
CTTTCTCTCTCGCCTTTGCTTATTTGGTTGCTGTTGTTGGTCTTTGGTTC
TCTCGACAGGCTCCCCCCGAAGTTTCGTCGGTGGTGTTTGCCTCTGAACA
CTTGGAAAAAGAGATCCCCAAGTTCGTCGGTGTTGTTGGCCTCAGGACAC
TTGGACACCGAGTTCCCCGCGTTTTCCTGGTTCGCCTGTTTGCCAACTAA
TCTTAATTGTGGAAAAGAGGGTTTCGTCCTCGACAGACGTTAGGGAGTTT
CAACCTTTGTGAAGGTGGTCTCCACATTACCCCCCCCTTTTTCGAGGCTT
CTTGTTTGCTAGGCAAGAGAAGTCTTCTTGAGGTAACCGCAACCCGACCG
GCTGGCGGCGAGTAGAACCACCTTTTTCCAACAATCTTCTGTGCGTGTGT
GCGGATGCGCCACTTCCGCCACGCATTGCCAGAAGTTTCTAGTTCGATAG
ACAGTACATCGTTTCTCGGTCCGCCCACCGTTTTTCTTTTTTCCGTACTC
CGGAAGAAAATTAGGTGATGAGCAGCGGGTTTTGAAACCGTGTCTTTTGC
AACCAAAAGCAAACACGCTGACATCTCTTCGTCGACGCCATTGTGGAAAA
GAGGATT
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Coding sequence (CDS) from alignment at Scaffold_195:264104..267910-

>EsuBft1222_5a-0001 ID=EsuBft1222_5a-0001|Name=EsuBft1222_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1539bp|location=Sequence derived from alignment at Scaffold_195:264104..267910- (Ectocarpus subulatus male Bft15b)
ATGTTCGTGGACAGCGCATCGCGGTGGCAACGGGGGTACGGGATGCGGGC
AAAGAGCGACACCCTGAAAATCGTGCAGCGGTTCCTCGCCGACATGAACG
GCATGGGCACTCCGGGGTGTTTCCGCATGGACAACGGCGGCGAGTTCACT
GGCTCCGCATTCACCTCGTTCTGCGACGCTGCTGGCATTCGGCGCGAGTA
CACCGCCCCCGACACCCCCAAGCAAAACGCGGTGGTCGAGAGCGCCATAT
GGCGCGCCATGAAGGGGGGCCACGCCGCGCGCCGCCACATCCTCGCCATG
GGCCACGTCGACCTCTCCTCCATCCCCAACGTCGGCGTCAGCGGACATCG
CCTGTGGCTCGCGTCGGCGCTGTGGGCATCCGCCTGCTTCAACCGCTCCG
CGACGAAGGCCAACCTGGGCTGGATGTCGCCGTTTGAGGCGTTCTTCGGC
TGGAAGCCGCCCCTCACCGTCGTCCCTTTTTTCCAGGAAGGGATGATGCG
CGTGAAGCGGGCCACGCAGGCTGACGTCCAATCTGCGCGGTGCTTCTTCC
TGCACGGTGCCAACAACCACTCGACGTCTACCGCCGTCGTTCTTCGCGCT
GACACCGGTCGCCTCGCCCTCACCAACAACGTCGTGTGGGTCAACCGCCG
GGCAGGGGCGCCGGCGCAGGTGCCGGGCATCGGGGGGAGTCTTCGGTCAC
CGCGTCGCCCTCGCCGGCCACCGCCGTACCTGCGGCCGATGCCGCACCGC
TGCCGCCCCCGCCATCAAGGACGGGGGCTATTCGATACATTGGGGAAGCT
CTCCATTGCGATCTACGAGGTGATGAAGATCAAGAAGGTCACCACCAGCT
CCTACCACCCACAGACCAACGGCGGCACGGATCGCGTCAACCACACGATG
GCCCAGATGCTTGCGGTGGTCGTCAACGAACAGCAAAACGAGTGGGACGT
ACATCTCCCGCACGTTGAGTTTGCCTACAACAATTCCGTGAACCAGTCTA
CTGGATTAGCGCCAAACGAGATCCACATCGGACGCATCCCGCGACTCCCT
CTTTCGGTCTTCGATCATCCCACGGTAGGCGGTCATCAAAGCTTGGCCCG
CGATCAACTCGAGTATTGCAACCTGGCTGTCGATCGCCAGCGCCGGGCCT
ACGAACTTGTCCGTGAGTACAACGCGCTGAAGATTTCGCGAGTCGAACGC
CGAAATTCATCCCTGCTGGACGCCATCCACAAGCTCCCTCAGTTTACCGT
TGGCGGGTGGGCTTGGGTGTACAACACGGCTGCTACGATTCGACAGGGTG
TGAAGAAGGACACGGACCAACAGGTGCTCAAGGCCAAATTCGCACTTTCC
TGGACGGGGCCCTACAAAGTTCTTGCGGTGTGTCCCGCTTCTTCCGACGC
CACTCCGGACGGCAGCCCGTTGGCGCATAAACTCCTCTACCTGGACCTAC
CTTCCGATCTTACCGGCCCAGCAGCTCGATGTCGCGTGGAAACCGTACAT
ATCGAGTGGCTCGGACTCGCGCGGCACAGCGAGAGCTAG
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