|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7FUI5 |
| ProteomeId | EsuBft1222_4 |
| Protein domains | PTHR18884 |
| Protein domains | TMhelix |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR027417 |
| Protein domains | Coil |
| Protein domains | IPR030379 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | IPR016491 |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | septin-9 os:mus musculus gn:sept9 pe:1 sv:1 [Automatic annotation] |
| Nb exon | 10 |
| Max annot lvl | 2759|Eukaryota |
| Length | 208 |
| Hectar predicted targeting category | other localisation |
| Evalue | 5.51e-284 |
| EggNOG OGs | COG5019@1|root,KOG1547@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K16944 |
| Description | GTP binding |
| COG category | DZ |
| BRITE | ko00000,ko04131,ko04147,ko04812 |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0031227 |
| GO | 0015629 |
| GO | 0044463 |
| GO | 0044430 |
| GO | 0051301 |
| GO | 0005525 |
| GO | 0005515 |
| GO | 0055085 |
| GO | 0007049 |
| GO | 0005938 |
| GO | 0009653 |
| GO | 0005929 |
| GO | 0016043 |
| GO | 0043234 |
| GO | 0044767 |
| GO | 0015630 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1222_4a-0001 ID=EsuBft1222_4a-0001|Name=EsuBft1222_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2086bp|location=Sequence derived from alignment at Scaffold_195:269637..273922- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTTCCGGCATCTCAACCAATGGCAAAACCCCATGGACCAGGCTTCTGT CGTGCATGGGCAAACAGGAGGCATTTTCGGCCACAGCAAGACGCTCAAGA TCGAAGAACGCGAATTTGACCACACGACATCCGACGGCCAGTACTACAAG TTCTTTTTGGTGGACACACCCGGATATGGCGACCACGTTAACGTTCGCAA AAATTTTCAACCAGTGGTCGATTTCATTACGAGAGGGAGCAGGAGGTATC TGGCTGAGATTAAAATGGGCAACGACACTCCGTCGGAGGACGGCAGGGCG GATGTTTGCTTATATTTTATCGCAGCCCATCGGTGCAAGCCCATCGACAT GGAATACATAAAGCAGCTCTCCAAGGTTGTTGCTGTGATTCCCGTGATCG GGAAGTCCGACAGTATGACGGTCGACGAGATGATTGACTTCAAAAAGGCC ATCGCCGACTCAGCCGCCCAGGCAAACGGCCTCGAATTCTTCAACTTTTC GGAGCGGGCATGGGAAAAGTGCTTGGCAGCCCTGAACATTGCCGATGAAC CCATCTGGCTGGGAGAGAGGCGGCCACCGCCGTACGCGGTGATTTCAAGC CAGGTCGACGACCCCAACGGAAAAGCTCACGCTCCTGATCCAGTACGCAG ATACCCGTGGGGTGAGTGTCATGTTATGAGACCGGAGCACAGCGACAATA CTTACCTTCAATGCCTCCTTCTGGAGGTGGGGTTCCAGGACATGAAGGAC GAGATGAAGAAGCGCTATGAAGCCTTCAAAAAGCAAGAGGCGAAGCTCCT GGTGACACGAATTGGAGAGAAAATTTGGGAGTATCGCCTTGCCATTGCCT CCGGCAAGCCGTCGATTATCTCGGTGGTGCTGGCGCTGATTTTCACTTTT GTGGCGGTGATTCTGGCAACCACTGAGGTTAACTTAAACGAGCCTTCCAC GGGCCTAGCTGATTGGAGCGAAGTAATTCTCAAGATTCAGCAGGTCAAAG GATCGGACCGAGTCGTGACAGCGGTGGACTCCGGGGAGGAAACCCTGGAC GTCCTTATGGAGGTGCTGATGGACGACCGAAAAATGTGGACGGAAACCTC CGAGGAGGCCCAGCGGGAAGCACCATCAGGTAGAAAAGCTGCCACCATCG GAAAGGACCCCGCCGCCAAGGGAACAGATCACCCCCAGGTTCCGGATGAA CCAGCGACTCAGTCTACCGCCACACAAACGAGTGGCTCCGTCATGATGCC CGATGATGGATCTTCGCGAAACAGCCAATCTCTAAGGAAGACAGAGGAGG CCACCAGCTTCTCCTCCACAAGCAATCCCGCAATCGAATCCGATAAGCCG GTGAGCATCTACTACATCCTCGGGTATTCGGCACTCTCGGTTCTCCTTGC AACCTGTGGCCTTGTTGTTTGGGCAGTCGTGGCGTTCTTGAAAGTCGGTA GCCATGTGTTTGCTACCGCGTTCAAGTGTTCGTCACTCTTTCGTGAAGCA CGAGGTTCGAACACGATTGCTGGACGCCCTCATGGAGTTGCAAATGGAGC GCTAGGAGATTTGCACGGAAACCCCCGAGGAGGCGCAGGTCGGTCTGACC ACCTTTGCCAAGAGTATCATGGTACGCTTGTTGAACGTGGAGAGGGGGGG TGCCGAGACAAAATACGATGGTCACGTTCACCGGATACTCTCAACAAGCA CGTTGAAATGAGTGGTTTCGGCGCTGTTCCCGCCTTCGTCGTTGCTCCGT CGTCTACCCGCCTCTTTGTCGTTCAGGATACATCATCACAAGGCGCAAAA GCTACAATTGAAGAAGGGGCCGCCACACAGGAAGCAGATCTTTCTGAATC AGCAGCTTGGTCTGCCGGCACACAACCGAGAGGCTTCACCACTACCCCCA ACGGTGTTCCTCCGCAAACGGACTTGTCGGAGACAATTAACCTAGTTGAC CGTACCGATCCCCCTGAATTGGACTTGTCGGGGATAATTAACCGTTTGTT TGCTGCTGTGCAACTCTCGGCTGCCGTTAGCTTGTGTGGGTGTGTTCTGT GGGGAGTAAGAAGTCTGAAATAAATGTTGATTGCCG back to topprotein sequence of EsuBft1222_4a-0001 >EsuBft1222_4 ID=EsuBft1222_4|Name=EsuBft1222_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=690bp
MFRHLNQWQNPMDQASVVHGQTGGIFGHSKTLKIEEREFDHTTSDGQYYK FFLVDTPGYGDHVNVRKNFQPVVDFITRGSRRYLAEIKMGNDTPSEDGRA DVCLYFIAAHRCKPIDMEYIKQLSKVVAVIPVIGKSDSMTVDEMIDFKKA IADSAAQANGLEFFNFSERAWEKCLAALNIADEPIWLGERRPPPYAVISS QVDDPNGKAHAPDPVRRYPWGECHVMRPEHSDNTYLQCLLLEVGFQDMKD EMKKRYEAFKKQEAKLLVTRIGEKIWEYRLAIASGKPSIISVVLALIFTF VAVILATTEVNLNEPSTGLADWSEVILKIQQVKGSDRVVTAVDSGEETLD VLMEVLMDDRKMWTETSEEAQREAPSGRKAATIGKDPAAKGTDHPQVPDE PATQSTATQTSGSVMMPDDGSSRNSQSLRKTEEATSFSSTSNPAIESDKP VSIYYILGYSALSVLLATCGLVVWAVVAFLKVGSHVFATAFKCSSLFREA RGSNTIAGRPHGVANGALGDLHGNPRGGAGRSDHLCQEYHGTLVERGEGG CRDKIRWSRSPDTLNKHVEMSGFGAVPAFVVAPSSTRLFVVQDTSSQGAK ATIEEGAATQEADLSESAAWSAGTQPRGFTTTPNGVPPQTDLSETINLVD RTDPPELDLSGIINRLFAAVQLSAAVSLCGCVLWGVRSLK back to topmRNA from alignment at Scaffold_195:269637..273922- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1222_4a-0001 ID=EsuBft1222_4a-0001|Name=EsuBft1222_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4286bp|location=Sequence derived from alignment at Scaffold_195:269637..273922- (Ectocarpus subulatus male Bft15b) ATGTTCCGGCATCTCAACCAATGGCAAAACCCCATGGACCAGGCTTCTGT
CGTGCATGGGCAAACAGGAGGCATTTTCGGCCACAGCAAGACGCTCAAGA
TCGAAGAACGCGAATTTGACCACACGACATCCGACGGCCAGTACTACAAG
TTCTTTTTGGTGGTGCGGTTGCCAATGCCGTGTATCACACTAATATCCAT
TGATTGTTGTCGGTATTGCGGCCTAGCAATCACGGATATTCATTTACCAC
GAGCACATGTATGTGTAGTCAAGCAAGTCCTCCTGCCGTAGAACAATGTC
TTACGTGCTTCTGTCGGGGGTGGGTGTCGATGTCCGACGATACCCACTAC
CGACGACCCTCCTTTGTGGGACGTACAATAGTGCGCCATCTCGATGGCCT
CCCTGCAACTAAGACGTCTCGAACTATGTCTGTATTGTACATCTTGGCAG
GACACACCCGGATATGGCGACCACGTTAACGTTCGCAAAAATTTTCAACC
AGTGGTCGATTTCATTACGAGAGGGAGCAGGAGGTATCTGGCTGAGATTA
AAATGGGCAACGACACTCCGTCGGAGGACGGCAGGGCGGATGTTTGGTGA
GTTGAGATCAGTGCACATTCGGTCCCTCCACCAGCTGAGCTGGTCAGCTT
GCCAACTTCGATGCAAATTGGTTGAAAGGATGTGCAAAAAATAATTGATC
ATATGATACATGATGTTCAGCAGATTATTTCATCGATCTTAAACAACCCG
CATAGCGACGTTTTCGCCTGAGCTGCAACCAAACGGTCGCATGCCCCTGG
ACCAGGCGATTGCACGAGCGTTTCTGACTCAACATTTGCCCCGATCGTGT
TCCGCCGGACCTACAGCTTATATTTTATCGCAGCCCATCGGTGCAAGCCC
ATCGACATGGAATACATAAAGCAGCTCTCCAAGGTGCGGGACAGAGTATT
GACAGTTCCACTATCGTGCGACATGATTGCCGAATCACCGCCAACACAAA
AGTTAGATCGAAAAGCTGGATAGCTCGTCACGAGTTCGGGTTGTGCGCAG
TGTGCTGCCGTCGCCTGATGGCCTGTCCTGGGCCTACCTGGTTGGCGACA
TTTTGTTGGGAAAGGCCTGACCTTGCTACGGTCGGTGTTCATCACCCAAC
GAGAGACGAAGTATATTGGTTCAGCGCTTCCCCGTCTCTGTTCATCCCCG
ATTTGCACAGGTTGTTGCTGTGATTCCCGTGATCGGGAAGTCCGACAGTA
TGACGGTCGACGAGATGATTGACTTCAAAAAGGCCATCGCCGACTCAGCC
GCCCAGGCAAACGGCCTCGAATTCTTCAACTTTTCGGGTGGGTGGTGTTT
CGGACGCATTGGGGCTTCCCTGGTGACACCACGAGCCAGCTCTCCAGCCC
CCTTCGGAGGCTAGGGATTAGGTGCACCTTGTTGTAGGTTTCCTGTTTTT
CCGCACATGTCACATGATGATTGACTAACAGCAGGAGTTAAATTAATCCC
TGTTTCCGTTGCTAAATTATACTGTCGGGCAGAGCGGGCATGGGAAAAGT
GCTTGGCAGCCCTGAACATTGCCGATGAACCCATCTGGCTGGGAGAGAGG
CGGCCACCGCCGTACGCGGTGATTTCAAGCCAGGTCGACGACCCCAACGG
AAAAGCTCACGCTCCTGATCCAGTACGCAGGTGGTATTTCTGTGTTCGAG
CCCGTACATGTCTGGCCTGTGCAAACAATATTTGACTTTTGGCGTTCAAC
CTACAGTGCGCCGACTCCGAACATGTTGCGTTGGGTGGGTCACGGGCTCT
CCTCCCAAGGCCCTCGAGGCTAACCAAAGTCCAACGCTTCATCTGATTTC
CTGTCGCACCAACAACCCTCGTCTCACAGATACCCGTGGGGTGAGTGTCA
TGTTATGAGACCGGAGCACAGCGACAATACTTACCTTCAATGCCTCCTTC
TGGAGGTGGGGTTCCAGGACATGAAGGACGAGATGAAGAAGCGCTATGAA
GCCTTCAAAAAGCAAGAGGTTCGAGCAAGAAGCTGCAACTCGTCGACTTC
CTCGGATTCGTGTGTGTTGCGGCAGCCCTTGGAGAGTTGCTGTATCGATA
AATTTATTTGGGCATGAATGATCACCAACATATGCAGTGGGTGATTTGTC
TGAAGCATGGGTGGCTCCTGTTGGAAATATTTTCTAGGTGTAATGACGTG
TCGAACAAAGCTATTGCAGCGTGTCAACAAGGGGAGTCAACGTTTAATCT
GTACGGTATACCACTATCAACGTACTGGACACTGGTTACGTCTGAACTAG
CCTGTGGGTGTCGCTGTACTTGTCCTCCCCACTGGTTCCATGCCTCCTGT
CACCGCATCACGATCGTACAGGCGAAGCTCCTGGTGACACGAATTGGAGA
GAAAATTTGGGAGTATCGCCTTGCCATTGCCTCCGGCAAGCCGTCGATTA
TCTCGGTGGTGCTGGCGCTGATTTTCACTTTTGTGGCGGTGATTCTGGCA
ACCACTGAGGTACATGCGCTGCTAGAGATCCGCCCGTTTGCATGCCTTAA
GTTCATCCTAGCTTGTGCTTCGTTTGATCATCCAGTAAAAAAAAGTGGCA
TAATGCAATGGTCGCAGTGGCATTTGGCTCCTCTATCGCGACTTTGAAAT
CGGTTGGAAACATGAAAGCCTGAAGACGTGACGATGCCGCTGTAATCACA
ACAATACCATATTCTCAGGTTAACTTAAACGAGCCTTCCACGGGCCTAGC
TGATTGGAGCGAAGTAATTCTCAAGATTCAGCAGGTGAGGTGGTGTACTG
CTTCTAGGGCCTTTCAATGCGTGGCATACACCAGAGGATGATTTCGCGAG
AAGTTGACGTTGCAAGCCAACGATGGATAGGTCTTCCTTTCTTATCGTCC
TTGGCGCTCAACAGCGCTTAACATAGGTTCGTGCGCCAGCTTCCGACCCA
ATATACTCTACACAGCTGTAAAGGGCGTTGAAACCCTTTTTGCGGTGGAC
ATCTTGCCAGGTCAAAGGATCGGACCGAGTCGTGACAGCGGTGGACTCCG
GGGAGGAAACCCTGGACGTCCTTATGGAGGTGCTGATGGACGACCGAAAA
ATGTGGACGGAAACCTCCGAGGAGGCCCAGGTCGGTCTGGCCATTTTTCC
TCATAATATCATGGTACGCTTGCTGAACACGGAGAGGGGGGTCGCTTAGA
CAAGATACGATGGTCACGTCGCCTGCTTCTCCCAACAAGAAAGAAAAGGA
GTGATTTCCGCGTTGTTCCCACCTTCACGATTCCTCCGTCATCCACCCGC
CTCGTATCCACAGCGGGAAGCACCATCAGGTAGAAAAGCTGCCACCATCG
GAAAGGACCCCGCCGCCAAGGGAACAGATCACCCCCAGGTTCCGGATGAA
CCAGCGACTCAGTCTACCGCCACACAAACGAGTGGCTCCGTCATGATGCC
CGATGATGGATCTTCGCGAAACAGCCAATCTCTAAGGAAGACAGAGGAGG
CCACCAGCTTCTCCTCCACAAGCAATCCCGCAATCGAATCCGATAAGCCG
GTGAGCATCTACTACATCCTCGGGTATTCGGCACTCTCGGTTCTCCTTGC
AACCTGTGGCCTTGTTGTTTGGGCAGTCGTGGCGTTCTTGAAAGTCGGTA
GCCATGTGTTTGCTACCGCGTTCAAGTGTTCGTCACTCTTTCGTGAAGCA
CGAGGTTCGAACACGATTGCTGGACGCCCTCATGGAGTTGCAAATGGAGC
GCTAGGAGATTTGCACGGAAACCCCCGAGGAGGCGCAGGTCGGTCTGACC
ACCTTTGCCAAGAGTATCATGGTACGCTTGTTGAACGTGGAGAGGGGGGG
TGCCGAGACAAAATACGATGGTCACGTTCACCGGATACTCTCAACAAGCA
CGTTGAAATGAGTGGTTTCGGCGCTGTTCCCGCCTTCGTCGTTGCTCCGT
CGTCTACCCGCCTCTTTGTCGTTCAGGATACATCATCACAAGGCGCAAAA
GCTACAATTGAAGAAGGGGCCGCCACACAGGAAGCAGATCTTTCTGAATC
AGCAGCTTGGTCTGCCGGCACACAACCGAGAGGCTTCACCACTACCCCCA
ACGGTGTTCCTCCGCAAACGGACTTGTCGGAGACAATTAACCTAGTTGAC
CGTACCGATCCCCCTGAATTGGACTTGTCGGGGATAATTAACCGTTTGTT
TGCTGCTGTGCAACTCTCGGCTGCCGTTAGCTTGTGTGGGTGTGTTCTGT
GGGGAGTAAGAAGTCTGAAATAAATGTTGATTGCCG back to topCoding sequence (CDS) from alignment at Scaffold_195:269637..273922- >EsuBft1222_4a-0001 ID=EsuBft1222_4a-0001|Name=EsuBft1222_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2073bp|location=Sequence derived from alignment at Scaffold_195:269637..273922- (Ectocarpus subulatus male Bft15b) ATGTTCCGGCATCTCAACCAATGGCAAAACCCCATGGACCAGGCTTCTGT CGTGCATGGGCAAACAGGAGGCATTTTCGGCCACAGCAAGACGCTCAAGA TCGAAGAACGCGAATTTGACCACACGACATCCGACGGCCAGTACTACAAG TTCTTTTTGGTGGACACACCCGGATATGGCGACCACGTTAACGTTCGCAA AAATTTTCAACCAGTGGTCGATTTCATTACGAGAGGGAGCAGGAGGTATC TGGCTGAGATTAAAATGGGCAACGACACTCCGTCGGAGGACGGCAGGGCG GATGTTTGCTTATATTTTATCGCAGCCCATCGGTGCAAGCCCATCGACAT GGAATACATAAAGCAGCTCTCCAAGGTTGTTGCTGTGATTCCCGTGATCG GGAAGTCCGACAGTATGACGGTCGACGAGATGATTGACTTCAAAAAGGCC ATCGCCGACTCAGCCGCCCAGGCAAACGGCCTCGAATTCTTCAACTTTTC GGAGCGGGCATGGGAAAAGTGCTTGGCAGCCCTGAACATTGCCGATGAAC CCATCTGGCTGGGAGAGAGGCGGCCACCGCCGTACGCGGTGATTTCAAGC CAGGTCGACGACCCCAACGGAAAAGCTCACGCTCCTGATCCAGTACGCAG ATACCCGTGGGGTGAGTGTCATGTTATGAGACCGGAGCACAGCGACAATA CTTACCTTCAATGCCTCCTTCTGGAGGTGGGGTTCCAGGACATGAAGGAC GAGATGAAGAAGCGCTATGAAGCCTTCAAAAAGCAAGAGGCGAAGCTCCT GGTGACACGAATTGGAGAGAAAATTTGGGAGTATCGCCTTGCCATTGCCT CCGGCAAGCCGTCGATTATCTCGGTGGTGCTGGCGCTGATTTTCACTTTT GTGGCGGTGATTCTGGCAACCACTGAGGTTAACTTAAACGAGCCTTCCAC GGGCCTAGCTGATTGGAGCGAAGTAATTCTCAAGATTCAGCAGGTCAAAG GATCGGACCGAGTCGTGACAGCGGTGGACTCCGGGGAGGAAACCCTGGAC GTCCTTATGGAGGTGCTGATGGACGACCGAAAAATGTGGACGGAAACCTC CGAGGAGGCCCAGCGGGAAGCACCATCAGGTAGAAAAGCTGCCACCATCG GAAAGGACCCCGCCGCCAAGGGAACAGATCACCCCCAGGTTCCGGATGAA CCAGCGACTCAGTCTACCGCCACACAAACGAGTGGCTCCGTCATGATGCC CGATGATGGATCTTCGCGAAACAGCCAATCTCTAAGGAAGACAGAGGAGG CCACCAGCTTCTCCTCCACAAGCAATCCCGCAATCGAATCCGATAAGCCG GTGAGCATCTACTACATCCTCGGGTATTCGGCACTCTCGGTTCTCCTTGC AACCTGTGGCCTTGTTGTTTGGGCAGTCGTGGCGTTCTTGAAAGTCGGTA GCCATGTGTTTGCTACCGCGTTCAAGTGTTCGTCACTCTTTCGTGAAGCA CGAGGTTCGAACACGATTGCTGGACGCCCTCATGGAGTTGCAAATGGAGC GCTAGGAGATTTGCACGGAAACCCCCGAGGAGGCGCAGGTCGGTCTGACC ACCTTTGCCAAGAGTATCATGGTACGCTTGTTGAACGTGGAGAGGGGGGG TGCCGAGACAAAATACGATGGTCACGTTCACCGGATACTCTCAACAAGCA CGTTGAAATGAGTGGTTTCGGCGCTGTTCCCGCCTTCGTCGTTGCTCCGT CGTCTACCCGCCTCTTTGTCGTTCAGGATACATCATCACAAGGCGCAAAA GCTACAATTGAAGAAGGGGCCGCCACACAGGAAGCAGATCTTTCTGAATC AGCAGCTTGGTCTGCCGGCACACAACCGAGAGGCTTCACCACTACCCCCA ACGGTGTTCCTCCGCAAACGGACTTGTCGGAGACAATTAACCTAGTTGAC CGTACCGATCCCCCTGAATTGGACTTGTCGGGGATAATTAACCGTTTGTT TGCTGCTGTGCAACTCTCGGCTGCCGTTAGCTTGTGTGGGTGTGTTCTGT GGGGAGTAAGAAGTCTGAAATAA back to top
|