EsuBft1216_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1216_6a-0001
Unique NameEsuBft1216_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:618328..620368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFJ4
ProteomeIdEsuBft1216_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length107
Hectar predicted targeting categoryother localisation
Evalue6.46e-86
EggNOG OGsKOG0281@1|root,KOG0281@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namefbxw9
KEGG rclassRC00017
KEGG koko:K10265,ko:K18551
KEGG ReactionR02323,R03346
KEGG Pathwayko00760,map00760
DescriptionSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
COG categoryS
BRITEko00000,ko00001,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1216_6aEsuBft1216_6aEctocarpus subulatus male Bft15bgeneScaffold_499 618328..620368 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1216_6a-0001-exonagat-exon-12316Ectocarpus subulatus male Bft15bexonScaffold_499 618328..618853 -
EsuBft1216_6a-0001-exonEsuBft1216_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 619625..620143 -
EsuBft1216_6a-0001-exonagat-exon-12315Ectocarpus subulatus male Bft15bexonScaffold_499 620340..620368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1216_6a-0001-cdsEsuBft1216_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 618328..618853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1216_6a-0001EsuBft1216_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 618328..620368 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1216_6a-0001 ID=EsuBft1216_6a-0001|Name=EsuBft1216_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1074bp|location=Sequence derived from alignment at Scaffold_499:618328..620368- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCACCCGCGACTCTTGGAAAAGTGGCTTTACGCTACGCTGGCCGC
AGTCGACGACCCCCTGGACGCGTTTCTCCAATCCCCACCTCGCTGCAACG
CCACCGACCGACGAGGTATTCGTCAGCCGTACGAACCGGTCTTACCAAGG
ACTACCACAGTCCACAGCGTTCGCCAACTACACCGTCCTGACGCAAGGCC
TGTCGGGCCGCCGCCCCACCCCCCGGAAGCACTGGCAGCGGAGCCGGGGA
GCTATTTCGCCCGAAAACGAGCGCGATCATCACCCGGTCGCGGGGTTTCC
GCTTACGAAGGCGTCGCTGGGGGCACCGGTGCCGGTCCACGCGAAGACGT
GCCTGGTGCTACTCCGAAACTGCCGTCGGGAGACGTAGCAGGGGGTGTCG
TCTCCGGATCAGGAGATGCGCAGCGGCGATTGGGCGCGCCAGCCGGAAGT
GCGTGGCAGCAGCGGAAGACCTGGAAGACGCAGCTCAGGGGGGACCTGGT
GACGTGCAGGAAGCCGTCAGAAAGGTTTTCGTTCGAGGGACAGCGGAGAG
GGAAGCAAGATGTGCTCATGGAGGTTGTGGCTTCAAACCCTCCCATCGTC
GCCATCACCTGCACCACCGAGCTGTCCCTCTTCAGCCTGGATGGGGAGCG
TCTTCCCGTCGTCACTGTCCAGCAGCAGAGGTGGAAGCAGAGGCAGAGGC
GTTGGCGGAATGTTGAGGGTGCCTGTCAGAAACGCGACAGCAGTGGCTTC
GATGCCAGCGCTGCTGTTGGTGCTGTCGATGTTGCGGCTGGTGCTGGTGA
TGGTGGTAGTGCTACTTCCGCTGCTGCCCTCGATGTTGCTGCTGGTGCTG
GTACTGCCCGCACGGCTGGTGCTGCTGGTGCCGCTGCCGCTTCTGGCGAG
GGAGAAACCGAGAGCTTTGGTGCAAACTACAAGTGGCAGCGCGAGAGGGG
GTCCTCAACCGGGGAGAGCGTCTACGAGCGAGATCGTGATGGTGAGGAGG
CCGCGGAAGTCCACCAGAGGGATATTCGCTGTCTGGCTGCCTCTCCTGCG
GGTGATATGGTGGCCACAGGGTGA
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protein sequence of EsuBft1216_6a-0001

>EsuBft1216_6 ID=EsuBft1216_6|Name=EsuBft1216_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=357bp
MFHPRLLEKWLYATLAAVDDPLDAFLQSPPRCNATDRRGIRQPYEPVLPR
TTTVHSVRQLHRPDARPVGPPPHPPEALAAEPGSYFARKRARSSPGRGVS
AYEGVAGGTGAGPREDVPGATPKLPSGDVAGGVVSGSGDAQRRLGAPAGS
AWQQRKTWKTQLRGDLVTCRKPSERFSFEGQRRGKQDVLMEVVASNPPIV
AITCTTELSLFSLDGERLPVVTVQQQRWKQRQRRWRNVEGACQKRDSSGF
DASAAVGAVDVAAGAGDGGSATSAAALDVAAGAGTARTAGAAGAAAASGE
GETESFGANYKWQRERGSSTGESVYERDRDGEEAAEVHQRDIRCLAASPA
GDMVATG
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mRNA from alignment at Scaffold_499:618328..620368-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1216_6a-0001 ID=EsuBft1216_6a-0001|Name=EsuBft1216_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2041bp|location=Sequence derived from alignment at Scaffold_499:618328..620368- (Ectocarpus subulatus male Bft15b)
ATGTTCCACCCGCGACTCTTGGAAAAGTGGTGTGTTGTGTTGGGCGTCCT
CTCTCCGACAAGGCTTTTTTGCAGCCCGCATGGCTCTTACCATGTTCTAC
CTCCTGCGACAGCGGATCGTTGTTCAACATTGTTCCATGTTTTTCTGCCC
TGTGGGTCCACATGTCTAACCCTCGTCATAACGTTCGCGTTCTTGAATCT
CACGGCGGGGGTTGGGGAACCGCAGGCTTTACGCTACGCTGGCCGCAGTC
GACGACCCCCTGGACGCGTTTCTCCAATCCCCACCTCGCTGCAACGCCAC
CGACCGACGAGGTATTCGTCAGCCGTACGAACCGGTCTTACCAAGGACTA
CCACAGTCCACAGCGTTCGCCAACTACACCGTCCTGACGCAAGGCCTGTC
GGGCCGCCGCCCCACCCCCCGGAAGCACTGGCAGCGGAGCCGGGGAGCTA
TTTCGCCCGAAAACGAGCGCGATCATCACCCGGTCGCGGGGTTTCCGCTT
ACGAAGGCGTCGCTGGGGGCACCGGTGCCGGTCCACGCGAAGACGTGCCT
GGTGCTACTCCGAAACTGCCGTCGGGAGACGTAGCAGGGGGTGTCGTCTC
CGGATCAGGAGATGCGCAGCGGCGATTGGGCGCGCCAGCCGGAAGTGCGT
GGCAGCAGCGGAAGACCTGGAAGACGCAGCTCAGGGGGGACCTGGTGACG
TGCAGGAAGCCGTCAGAAAGGTTTTCGTTCGAGGGACAGCGGAGGTGAGT
TCCGTACTGGTGTTGGTGGTGAGATCGATTTAGCTCTGGCCTGGTGGAGT
GGCTGGCATGCGCGGGGACTGGTCGGTAAAAGGAAGGAACACGAAACGAA
ACGTTTCTCACCGCGTGTGATCTCCGCCGCCAACGCAGTAATTTCTTGCT
CCCCCTTTTCCTCCTATGGCACGAGACATAGCAGTTTGGAAAGCGACGGA
AGTTGAACTTGGTGCATCCTTGTCTAGAGTCAAACACAAAACGTCTTTGG
CTCTGCTACCCCGCCCCGTCCATGATTGGAGAGAAGTTGCGGCCTCGTCC
ACAAGACGACTGCCACCCCCCCCCTCGTTTCAACAACTGAACAGCGCTTC
CCGCGCACAACTTTGCGCCCTTCCTAATCACCGGGCCAAGGATCCGCACA
GCTCCGTGTACCTCATCAAGTCGCGCCATGAGAGCCGCCAATAGTTGTAT
CGTATGATGATATCGAAAACCCACTGACTCATCAGCAGAAAGTCCAAACC
AATCGCCCCCCATCAGTGGCCGACCAGCGCGTGTGGGTTGCAAACACCTG
TTTGTTGTTCACCCTCTCCACATACACACATCTTTTCCACCGGCAATGGC
GTCCTGTTCATGTTAGAGCTTTTGACGTTTCGTCTTGCGCGTTCGCCTTG
TTGGGGAGAGATGTTCGCCTTGTTGGGGAGAGATGGGTGAAGCCGCTCCC
GACATATTGCCCCTTGCATTTGTTGCGCTGACCGCAACGCTTAACTCAAC
CCTCGCTTGGGGCAGAGGGAAGCAAGATGTGCTCATGGAGGTTGTGGCTT
CAAACCCTCCCATCGTCGCCATCACCTGCACCACCGAGCTGTCCCTCTTC
AGCCTGGATGGGGAGCGTCTTCCCGTCGTCACTGTCCAGCAGCAGAGGTG
GAAGCAGAGGCAGAGGCGTTGGCGGAATGTTGAGGGTGCCTGTCAGAAAC
GCGACAGCAGTGGCTTCGATGCCAGCGCTGCTGTTGGTGCTGTCGATGTT
GCGGCTGGTGCTGGTGATGGTGGTAGTGCTACTTCCGCTGCTGCCCTCGA
TGTTGCTGCTGGTGCTGGTACTGCCCGCACGGCTGGTGCTGCTGGTGCCG
CTGCCGCTTCTGGCGAGGGAGAAACCGAGAGCTTTGGTGCAAACTACAAG
TGGCAGCGCGAGAGGGGGTCCTCAACCGGGGAGAGCGTCTACGAGCGAGA
TCGTGATGGTGAGGAGGCCGCGGAAGTCCACCAGAGGGATATTCGCTGTC
TGGCTGCCTCTCCTGCGGGTGATATGGTGGCCACAGGGTGA
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Coding sequence (CDS) from alignment at Scaffold_499:618328..620368-

>EsuBft1216_6a-0001 ID=EsuBft1216_6a-0001|Name=EsuBft1216_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1074bp|location=Sequence derived from alignment at Scaffold_499:618328..620368- (Ectocarpus subulatus male Bft15b)
ATGTTCCACCCGCGACTCTTGGAAAAGTGGCTTTACGCTACGCTGGCCGC
AGTCGACGACCCCCTGGACGCGTTTCTCCAATCCCCACCTCGCTGCAACG
CCACCGACCGACGAGGTATTCGTCAGCCGTACGAACCGGTCTTACCAAGG
ACTACCACAGTCCACAGCGTTCGCCAACTACACCGTCCTGACGCAAGGCC
TGTCGGGCCGCCGCCCCACCCCCCGGAAGCACTGGCAGCGGAGCCGGGGA
GCTATTTCGCCCGAAAACGAGCGCGATCATCACCCGGTCGCGGGGTTTCC
GCTTACGAAGGCGTCGCTGGGGGCACCGGTGCCGGTCCACGCGAAGACGT
GCCTGGTGCTACTCCGAAACTGCCGTCGGGAGACGTAGCAGGGGGTGTCG
TCTCCGGATCAGGAGATGCGCAGCGGCGATTGGGCGCGCCAGCCGGAAGT
GCGTGGCAGCAGCGGAAGACCTGGAAGACGCAGCTCAGGGGGGACCTGGT
GACGTGCAGGAAGCCGTCAGAAAGGTTTTCGTTCGAGGGACAGCGGAGAG
GGAAGCAAGATGTGCTCATGGAGGTTGTGGCTTCAAACCCTCCCATCGTC
GCCATCACCTGCACCACCGAGCTGTCCCTCTTCAGCCTGGATGGGGAGCG
TCTTCCCGTCGTCACTGTCCAGCAGCAGAGGTGGAAGCAGAGGCAGAGGC
GTTGGCGGAATGTTGAGGGTGCCTGTCAGAAACGCGACAGCAGTGGCTTC
GATGCCAGCGCTGCTGTTGGTGCTGTCGATGTTGCGGCTGGTGCTGGTGA
TGGTGGTAGTGCTACTTCCGCTGCTGCCCTCGATGTTGCTGCTGGTGCTG
GTACTGCCCGCACGGCTGGTGCTGCTGGTGCCGCTGCCGCTTCTGGCGAG
GGAGAAACCGAGAGCTTTGGTGCAAACTACAAGTGGCAGCGCGAGAGGGG
GTCCTCAACCGGGGAGAGCGTCTACGAGCGAGATCGTGATGGTGAGGAGG
CCGCGGAAGTCCACCAGAGGGATATTCGCTGTCTGGCTGCCTCTCCTGCG
GGTGATATGGTGGCCACAGGGTGA
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