EsuBft1216_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1216_4a-0001
Unique NameEsuBft1216_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:624972..629128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1216_4
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length185
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001980.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1216_4aEsuBft1216_4aEctocarpus subulatus male Bft15bgeneScaffold_499 624972..629128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1216_4a-0001EsuBft1216_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 625213..629074 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1216_4a-0001-exonEsuBft1216_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 624972..625371 -
EsuBft1216_4a-0001-exonagat-exon-12312Ectocarpus subulatus male Bft15bexonScaffold_499 625886..626140 -
EsuBft1216_4a-0001-exonagat-exon-12311Ectocarpus subulatus male Bft15bexonScaffold_499 626746..626959 -
EsuBft1216_4a-0001-exonagat-exon-12310Ectocarpus subulatus male Bft15bexonScaffold_499 627316..627719 -
EsuBft1216_4a-0001-exonagat-exon-12309Ectocarpus subulatus male Bft15bexonScaffold_499 628544..629128 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1216_4a-0001-exonagat-three_prime_utr-2038Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 624972..625212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1216_4a-0001-cdsEsuBft1216_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 625213..625371 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1216_4a-0001-exonagat-five_prime_utr-1342Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 629075..629128 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1216_4a-0001 ID=EsuBft1216_4a-0001|Name=EsuBft1216_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1858bp|location=Sequence derived from alignment at Scaffold_499:624972..629128- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCACCGCGGCCTGACGATCTCCTGCTAACCGCGCGGCTGCGGTCTTGTGA
GAAGATGAAGCGCTGCCGATTCGTTTCCATCGAGATCTTGGTGATGCTTT
GCTTCGCCGCGGTTGCTCTTGCCTTCCAAACAGCGGTCCGACTCAGCGCT
GGAGACTCGACCGCTCCTCCAGCGGCTTGCTCAGACGGCAGGTTGACTTC
ATCAACTAGAGCACTCATCCCCAACTCATACAGGCCCGCGCGCTGGTGCT
GGACTCGTGTCGCCAGTAGAGACGAAGGTAGTAAGAACAGCAGAGTGCTC
ATGATGGGGAGATCAAACCGCCTGAAGACCGTGATTGCCAGGCAACGCAA
CCTTGAGAAGAGCAACGCGCCGGTGATCCTCTCCGAGAAGGCCAAACGAA
AGGCCAAGCGCGAGAGACGGGCTTACTTCCGAGAGAGGTACGCGTGCTCG
GGTCGTCGCCTGATAAAGCTGCAGCAGGAGGACCCTGAATCGTTGTACAT
CGGATTTGTTGGGACGAATGGTGCTGGACGAGCTCAGGCGCTCGGGGCGG
TGGAAGCCTACCTCAAACGGGCGACGGAGTTCAAGGTCGCGAAGCACCAC
AAGGGCAACGCGAAAATTAAGCTTGTGGACGCGGGAAACATGTGTTTGTC
GGAGATGAAGGGCAAGGGCGAGCGAAAGTTGAGCCTTCTACGGCACTGTG
ACCTCCTCGTACACGTGGTACGGTGCTTCGATCTGTTCGAGCCGAAGCCG
TTCAAACCCTGGAGGGGGGCAGGGAGGGAGGAAGACCGACCGGGTGACGA
GGTTGACGAGGCACCCGCAACACAACTGCTGTCGAATCTGGGAGGGGGGG
TTAAACAGGGGGGCGGGGATGGTGAGGAAGTAGAGGAAGAAATCGACTGG
CCGCTTTCCCCAACGCCGCTGGAGGACATCAAGGAAACGAGGGCTGAAAT
GGCCTACGCCGACCTTCAGTTTATCGAGGAGAGGCACAAAACGAATCACA
CGAAGTGGTTCTGGCGGAACCGGAACCGCGCCTTGAACGAAAAGGCCGCC
ATCGCGTTGGTGACACCGCTGCTGGAAGACGCCTACGCCAGTGGTGGCGT
GCTGGAGCCCGTTGGAACCGGGTTCCGAAACAGCTGCTTACGCGACGAGC
CGGGAAAGAACGGCACGACGCTTTACAGGAGCAAGCGGAGGGCGGCGATT
GAGGAGATTGGGTTCCTGACCCCCAAACCCGTCGTGTACGTCGCCAACGT
GCCGTCGGAAGCGGCGCCGTCTAGCGATGAGGATGACGATGCCAACGACG
ACACCAAACCGAAAGAGGCATTCGAATCAGGGGAAGCCATCAGGAAAGTG
GCCCTCGCACACGCGGACAAGGTGGTCAGTCTCAAACGCGATTACGGCGT
GCCCGTCGTTGTGGGGTGCCTGAGAAATCCAGAAGGACAGAATGCTCTCG
GAGCGGCGGTGTTCAAAGCCATCCCTCGGGACTTCCTGAGCCGCGATCCC
AAGCTCAGGAAGAGCGCAAACAGTCCACGAAGCAAAACGCAACAGCGGAC
TCGGACTCAACAGCGGCGACGGTCGAGTGTAACCAAGGCACCTAGAACAG
GATCGGTACCTGTGTAGGGAGGGATTACGGACTTTGCATTTAGAGATTTT
TGGCCTCGTGGTAGCTTTGATTCCCTGTGCACGAAAGACGACGTTTAGAG
AACATGGCCTCGTTAACCTCCCGTGGTGTTTAGTAAAAAGTGCTCAACTT
TGGGAGGAGCAGAGCGAGGGAGACCCGCCCTCCGAAAGGTAGATTAATGG
GCATGGACCGTGGACACATGAAGAGACAACTCTTCAGAAAATATTGAAAC
CACTCAAT
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protein sequence of EsuBft1216_4a-0001

>EsuBft1216_4 ID=EsuBft1216_4|Name=EsuBft1216_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=520bp
MKRCRFVSIEILVMLCFAAVALAFQTAVRLSAGDSTAPPAACSDGRLTSS
TRALIPNSYRPARWCWTRVASRDEGSKNSRVLMMGRSNRLKTVIARQRNL
EKSNAPVILSEKAKRKAKRERRAYFRERYACSGRRLIKLQQEDPESLYIG
FVGTNGAGRAQALGAVEAYLKRATEFKVAKHHKGNAKIKLVDAGNMCLSE
MKGKGERKLSLLRHCDLLVHVVRCFDLFEPKPFKPWRGAGREEDRPGDEV
DEAPATQLLSNLGGGVKQGGGDGEEVEEEIDWPLSPTPLEDIKETRAEMA
YADLQFIEERHKTNHTKWFWRNRNRALNEKAAIALVTPLLEDAYASGGVL
EPVGTGFRNSCLRDEPGKNGTTLYRSKRRAAIEEIGFLTPKPVVYVANVP
SEAAPSSDEDDDANDDTKPKEAFESGEAIRKVALAHADKVVSLKRDYGVP
VVVGCLRNPEGQNALGAAVFKAIPRDFLSRDPKLRKSANSPRSKTQQRTR
TQQRRRSSVTKAPRTGSVPV
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mRNA from alignment at Scaffold_499:624972..629128-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1216_4a-0001 ID=EsuBft1216_4a-0001|Name=EsuBft1216_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4157bp|location=Sequence derived from alignment at Scaffold_499:624972..629128- (Ectocarpus subulatus male Bft15b)
GCACCGCGGCCTGACGATCTCCTGCTAACCGCGCGGCTGCGGTCTTGTGA
GAAGATGAAGCGCTGCCGATTCGTTTCCATCGAGATCTTGGTGATGCTTT
GCTTCGCCGCGGTTGCTCTTGCCTTCCAAACAGCGGTCCGACTCAGCGCT
GGAGACTCGACCGCTCCTCCAGCGGCTTGCTCAGACGGCAGGTTGACTTC
ATCAACTAGAGCACTCATCCCCAACTCATACAGGCCCGCGCGCTGGTGCT
GGACTCGTGTCGCCAGTAGAGACGAAGGTAGTAAGAACAGCAGAGTGCTC
ATGATGGGGAGATCAAACCGCCTGAAGACCGTGATTGCCAGGCAACGCAA
CCTTGAGAAGAGCAACGCGCCGGTGATCCTCTCCGAGAAGGCCAAACGAA
AGGCCAAGCGCGAGAGACGGGCTTACTTCCGAGAGAGGTACGCGTGCTCG
GGTCGTCGCCTGATAAAGCTGCAGCAGGAGGACCCTGAATCGTTGTACAT
CGGATTTGTTGGGACGAATGGTGCTGGACGAGCTCAGGCGCTCGGGGCGG
TGGAAGCCTACCTCAAACGGGCGACGGAGTTCAAGGTGTAGTCTACAGGA
ACAGTCGGACTCGTAACCGCCACCCAGCACTGTCCTACAGCAGCGTGTCT
TCTGTCCTACAGCGTATGTGGTCTGTCCTACAGCAGTATTCCGTTTTATC
ATGACGTGGTGAACAAGGTAGAAGGGAGCGATAGTAGTGACTTGCGACAG
AGTTAAAGGTACAACAGTTGGCCGGACGCATAAGCGCCAACCCCCACCCA
ACCAGCAGATGTTTGTGTGTACCAGAATGTCGTCAGTCCCATACAGCAGT
TTTTTTCCCGTTTGTATCATGATGTCGTCAACAAGATAAAGGGAGCAAGT
AGTGAATTGCAACGGAGTTCCAGGTACAGCACTTGGGCCCGTAAACACGA
AGGCCCCCAAAGGCGGTGTTGGTCTGTCTTGCAGCATTCCTAGGCATATA
TATATATATCATGGTGTGGGATCAACCAGGTTGCCCATACTCATTTGGTA
TTGTAGTGACTTGCGAATAGAGTTGCGAATAGCCAACGGTTACACTCGCG
CATGTGGCTGAAAAAGATAGCGCACATCAGTATGATCGATATATCGCTTG
ATAGAGTTCAAGTTTGTGTGAAAACAAGCCCTTCTCCTGTAGCGTGCTGT
GCGTAATTGATGCCGGCTCTCTCCCTGTTTGTTCTGCTAGGATATTCTAC
ATATCTTGACAAAGATAAAGATGTGTGTGGTTTTTCATTCCATGTACGAT
GTGTGGCAACCCTCCATTCTTGCGATGAGTTAAGACAAGTAGACCTTCAA
TACTAACGAATGCCGAGCGCCTGAAATTGATCACGTTGCTCCTGAACTCT
GCGTAACAGGTCGCGAAGCACCACAAGGGCAACGCGAAAATTAAGCTTGT
GGACGCGGGAAACATGTGTTTGTCGGAGATGAAGGGCAAGGGCGAGCGAA
AGTTGAGCCTTCTACGGCACTGTGACCTCCTCGTACACGTGGTACGGTGC
TTCGATCTGTTCGAGCCGAAGCCGTTCAAACCCTGGAGGGGGGCAGGGAG
GGAGGAAGACCGACCGGGTGACGAGGTTGACGAGGCACCCGCAACACAAC
TGCTGTCGAATCTGGGAGGGGGGGTTAAACAGGGGGGCGGGGATGGTGAG
GAAGTAGAGGAAGAAATCGACTGGCCGCTTTCCCCAACGCCGCTGGAGGA
CATCAAGGAAACGAGGGCTGAAATGGCCTACGCCGACCTTCAGTTTATCG
AGGAGAGGCACAAGTAAGTCGGAAAACCCTCGCTGCCATGCAATTGACAC
AACGATAGAGCGCGGTAGAGTACGTGCAGTCCTTGTAAGTGCAGGAATGG
CGTGCAGTTGGCTCGACGGAATCGACACCGTGTTCGATCCGGACGTTTTC
GTATCGGAATTCGGTTGGGAATGGGTACAATCAACCCTCGTGCAACCGGT
GGGTTATCCTGGGGGGGGTGGAGCAGAACGCGGCACAAGTACATTTTCCG
CAGCCACTCTGGCGACACATCCGTGCAAGATTTGCGTATGGCTTCAACAT
CATCGCTTCTTTTGTAACCTATCGTTCTTCTGCTGCCCCCCGCCAACACC
TCGCGTCATGCGTACGAAGAACGAATCACACGAAGTGGTTCTGGCGGAAC
CGGAACCGCGCCTTGAACGAAAAGGCCGCCATCGCGTTGGTGACACCGCT
GCTGGAAGACGCCTACGCCAGTGGTGGCGTGCTGGAGCCCGTTGGAACCG
GGTTCCGAAACAGCTGCTTACGCGACGAGCCGGGAAAGAACGGCACGACG
CTTTACAGGAGCAAGCGGAGGGCGGCGATTGAGGTATGAGCGAGGGCTAT
CTTGCCCCGTTTGACAGCCGAAACAGGGACGAGGCCCTGCTCGCGTGGCC
GGTGACCAAACGAGTCAGCCTAGCTGATGAAAGAATGTTCCAAGGGTGTG
TTCGGTACGGGACGGGTACGCTCGGTAGGTTATGGAGGGCTGTACCGATG
CGTACCGGGCATTTTCTGTGGGTATGGAGGTCCATACCGAGGCGCACCGG
GAAGTTCCGGTAGGTATGGGCCATACCGAGGCGTACCGGGGTTTTCGGTA
GGTATGGAGGGCAATACCGAAGGGTACCGAGACGCTCGGTAGGGTATATA
CCGGCGGAAATACCGGCGGTTACGTCGGTACGTACCGCACCGAACACTCC
CTTGGAGTTTTCGCTAGTTTGATAGCCGTCTGGACTCTTTAACTTGTTGT
TGATACCGAGCCCGACACTTGGCGGACTGTCAACTCCATCATGGACGAAC
CCCACAGGCTACATATCGGCAGTTCACGACTCACTTCGCTTCGCCATGCC
GCCTATTCCCACAACTGCTCAAGCGTGCACGGCCGTCTTTCCCCACTTTG
CATCATGGTGCGACCGCCGCTACCTCGCACCGACGCAGGAGATTGGGTTC
CTGACCCCCAAACCCGTCGTGTACGTCGCCAACGTGCCGTCGGAAGCGGC
GCCGTCTAGCGATGAGGATGACGATGCCAACGACGACACCAAACCGAAAG
AGGCATTCGAATCAGGGGAAGCCATCAGGAAAGTGGCCCTCGCACACGCG
GACAAGGTGGTCAGTCTCAAACGCGATTACGGCGTGCCCGTCGTTGTGGG
GTGCCTGAGAAATCCAGAAGGACAGAATGCTCTCGGAGCGGCGGTGAGAT
GCTTGGGCTGGCTGTGATACCGTGGGTGCTTGCTGTTTTTGTGTCTTTTT
TTGTGAAGCTGTCGGAATTCTCTGGTCTTCCTCAAACTACCGTTATTTAT
GCCGCGTTCCATGAGTTGGCAGAGGCCCTGAGGCACGTGTGCAGTCGATG
CAGAGTAGACCATAAGATGAAAAACATGCGTGTAGACCAGCCATCATGCT
GCTTGTATACGTTCGAACGTCCCTCTACCAGGAACAACCCCCTGAGGCAT
CCATTGAAGCCATTCCTATGCTATTCCAGCAATATTGTAGGCACAGCAAA
CTCTACGAATACATCGCCGCAGGAAGAAAAGTGCCTTTTGTAGTTTCCAA
TGCACAATTTTCGCATACGATCAGCGATTGCTTTGCCGAGGCAGTTGCTG
TAGTTAGACCATCTAACTCTTCAAACAAATTACAGTTTGTCGTGTCTCCT
TGTTGTTTGCTTACGCACATCTCTATCGGAATACGAACGTCGGCGTTCCG
TGCGCAGGTGTTCAAAGCCATCCCTCGGGACTTCCTGAGCCGCGATCCCA
AGCTCAGGAAGAGCGCAAACAGTCCACGAAGCAAAACGCAACAGCGGACT
CGGACTCAACAGCGGCGACGGTCGAGTGTAACCAAGGCACCTAGAACAGG
ATCGGTACCTGTGTAGGGAGGGATTACGGACTTTGCATTTAGAGATTTTT
GGCCTCGTGGTAGCTTTGATTCCCTGTGCACGAAAGACGACGTTTAGAGA
ACATGGCCTCGTTAACCTCCCGTGGTGTTTAGTAAAAAGTGCTCAACTTT
GGGAGGAGCAGAGCGAGGGAGACCCGCCCTCCGAAAGGTAGATTAATGGG
CATGGACCGTGGACACATGAAGAGACAACTCTTCAGAAAATATTGAAACC
ACTCAAT
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Coding sequence (CDS) from alignment at Scaffold_499:624972..629128-

>EsuBft1216_4a-0001 ID=EsuBft1216_4a-0001|Name=EsuBft1216_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1563bp|location=Sequence derived from alignment at Scaffold_499:624972..629128- (Ectocarpus subulatus male Bft15b)
ATGAAGCGCTGCCGATTCGTTTCCATCGAGATCTTGGTGATGCTTTGCTT
CGCCGCGGTTGCTCTTGCCTTCCAAACAGCGGTCCGACTCAGCGCTGGAG
ACTCGACCGCTCCTCCAGCGGCTTGCTCAGACGGCAGGTTGACTTCATCA
ACTAGAGCACTCATCCCCAACTCATACAGGCCCGCGCGCTGGTGCTGGAC
TCGTGTCGCCAGTAGAGACGAAGGTAGTAAGAACAGCAGAGTGCTCATGA
TGGGGAGATCAAACCGCCTGAAGACCGTGATTGCCAGGCAACGCAACCTT
GAGAAGAGCAACGCGCCGGTGATCCTCTCCGAGAAGGCCAAACGAAAGGC
CAAGCGCGAGAGACGGGCTTACTTCCGAGAGAGGTACGCGTGCTCGGGTC
GTCGCCTGATAAAGCTGCAGCAGGAGGACCCTGAATCGTTGTACATCGGA
TTTGTTGGGACGAATGGTGCTGGACGAGCTCAGGCGCTCGGGGCGGTGGA
AGCCTACCTCAAACGGGCGACGGAGTTCAAGGTCGCGAAGCACCACAAGG
GCAACGCGAAAATTAAGCTTGTGGACGCGGGAAACATGTGTTTGTCGGAG
ATGAAGGGCAAGGGCGAGCGAAAGTTGAGCCTTCTACGGCACTGTGACCT
CCTCGTACACGTGGTACGGTGCTTCGATCTGTTCGAGCCGAAGCCGTTCA
AACCCTGGAGGGGGGCAGGGAGGGAGGAAGACCGACCGGGTGACGAGGTT
GACGAGGCACCCGCAACACAACTGCTGTCGAATCTGGGAGGGGGGGTTAA
ACAGGGGGGCGGGGATGGTGAGGAAGTAGAGGAAGAAATCGACTGGCCGC
TTTCCCCAACGCCGCTGGAGGACATCAAGGAAACGAGGGCTGAAATGGCC
TACGCCGACCTTCAGTTTATCGAGGAGAGGCACAAAACGAATCACACGAA
GTGGTTCTGGCGGAACCGGAACCGCGCCTTGAACGAAAAGGCCGCCATCG
CGTTGGTGACACCGCTGCTGGAAGACGCCTACGCCAGTGGTGGCGTGCTG
GAGCCCGTTGGAACCGGGTTCCGAAACAGCTGCTTACGCGACGAGCCGGG
AAAGAACGGCACGACGCTTTACAGGAGCAAGCGGAGGGCGGCGATTGAGG
AGATTGGGTTCCTGACCCCCAAACCCGTCGTGTACGTCGCCAACGTGCCG
TCGGAAGCGGCGCCGTCTAGCGATGAGGATGACGATGCCAACGACGACAC
CAAACCGAAAGAGGCATTCGAATCAGGGGAAGCCATCAGGAAAGTGGCCC
TCGCACACGCGGACAAGGTGGTCAGTCTCAAACGCGATTACGGCGTGCCC
GTCGTTGTGGGGTGCCTGAGAAATCCAGAAGGACAGAATGCTCTCGGAGC
GGCGGTGTTCAAAGCCATCCCTCGGGACTTCCTGAGCCGCGATCCCAAGC
TCAGGAAGAGCGCAAACAGTCCACGAAGCAAAACGCAACAGCGGACTCGG
ACTCAACAGCGGCGACGGTCGAGTGTAACCAAGGCACCTAGAACAGGATC
GGTACCTGTGTAG
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