EsuBft1205_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1205_8a-0001
Unique NameEsuBft1205_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_210contigScaffold_210:160357..162061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1205_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length138
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1205_8aEsuBft1205_8aEctocarpus subulatus male Bft15bgeneScaffold_210 160357..162061 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1205_8a-0001-exonagat-exon-37491Ectocarpus subulatus male Bft15bexonScaffold_210 160357..160905 +
EsuBft1205_8a-0001-exonEsuBft1205_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_210 161229..162061 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1205_8a-0001-exonagat-five_prime_utr-1293Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_210 160357..160524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1205_8a-0001-cdsEsuBft1205_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_210 160525..160905 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1205_8a-0001-exonagat-three_prime_utr-1969Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_210 161742..162061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1205_8a-0001EsuBft1205_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_210 160525..161741 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1205_8a-0001 ID=EsuBft1205_8a-0001|Name=EsuBft1205_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1382bp|location=Sequence derived from alignment at Scaffold_210:160357..162061+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATCCTGTTTCACCCCAAACATCGCCGACTCAAGTCTCGTTCTCCACGGC
AATCGACTCCGCTTGGTCGAATTACATATAGAGGACACCACTCTCGGGGT
CATCAGACCTAATCTCGTTCTAGGACGGCCGTCTCGACTTGGGCCTGGCC
GTGGCTCGTGGCAGCCTCATGCAGGTAGACCGCACAATCGAAATCCGAGG
GGAAGAGAGGGTAGTGAGACAGCAGCGGAAGAAGCACAGCCGCGGGATAC
TGCTTATCAGCCAGCTGTTGAGAAAGGGTACCACCGAGGCAGCTGGAAAA
CCCATGCAATCTGTGTTTGCTGATGAAGTTGAGCTCCTCGAAACGGGTAG
AGAGCATGTTGAAGGCATCCGAGAGAGAGCATCGAAACGCGGGAAACGAC
AGCCTGCTGCTGCTGCTGCTGCTTCATCTGCTGCGGCGAAGAAGGCGAAG
CGCAAGGGGGCGGACGCAGCTCTCTCCGACCCTCTAGCATTGGCTCATGA
TGGCGGGACTAGAAGCGGTGCTACCCCAGAGACTTCGCGGGAGGAAGCGG
TTGCGGACGAGCGTCGCTCTAGCGCGATGGATTTGATGCAGAACGACCCC
GTGTTGATAGAGCGAGTACGGGCCATGCTGGATACTGGCGCGGCAGAGCA
GGCAGCAGCTAAGGTGGCTGCGATCGACGCGGCCAACACTCGTGCACTCC
GCGCGTCGTTGCAAGCGCTGAAGCAGCACTGCAACAGCTGTAGGGCGGAC
CACTTTCCAGACAGCGCTCGCTGCAGCAGCCGGAGCGGGAGAGCACACGT
GTCGGACGTGTGCCACGCCGGCCAGCGGTGCAAGCCCGTTGAGTCTGGTG
GAGTGAGCCTTGCCGAGCGAGCCAACAGTCTCGGCATTCGGCACGAGACT
TTCAGCGACGCACGGCGGCGGATGTACAACACGAACCACGACATCGCCCC
CAAGATCGCTGCGAGTGAGGGATACTACGAGTACAACGAGCGCAAGACAC
GGAGTGACGTGACGAATCCCGGGAACAGAGGAGGAGCAGGGGGAGGTGCA
GGATACCTATAGTCTTGTGTGGGCTACTAGTGTGGGGGTGCAGAACCCAA
AGGCTACGCTGTTTGAAGATTCCGTCGTGGGGAGGTCGGCCGGCCGCGAG
AGGTCGTACAGCGGTCGGGAACAGCGGGTAGACTAGTCATAGCTCCGGCT
GTCAGTTAGAGCAGCTCTTGCGGAGGTAGCGCCTGCACCGCTGTGTTACA
GGCCAAATTTTTCTTTTTTTTTAAGGACCACCTCTTATAATAGCTATGCA
TACGAGCATCCGGATGGATCTCGAAGATACATGCATGTCGATTTTCGCAA
CATCCGGTGGCTCATTTTTTGGATAAATTCCT
back to top

protein sequence of EsuBft1205_8a-0001

>EsuBft1205_8 ID=EsuBft1205_8|Name=EsuBft1205_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=297bp
MQVDRTIEIRGEERVVRQQRKKHSRGILLISQLLRKGTTEAAGKPMQSVF
ADEVELLETGREHVEGIRERASKRGKRQPAAAAAASSAAAKKAKRKGADA
ALSDPLALAHDGGTRSGATPETSREEAVADERRSSAMDLMQNDPVLIERV
RAMLDTGAAEQAAAKVAAIDAANTRALRASLQALKQHCNSCRADHFPDSA
RCSSRSGRAHVSDVCHAGQRCKPVESGGVSLAERANSLGIRHETFSDARR
RMYNTNHDIAPKIAASEGYYEYNERKTRSDVTNPGNRGGAGGGAGYL
back to top

mRNA from alignment at Scaffold_210:160357..162061+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1205_8a-0001 ID=EsuBft1205_8a-0001|Name=EsuBft1205_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1705bp|location=Sequence derived from alignment at Scaffold_210:160357..162061+ (Ectocarpus subulatus male Bft15b)
CATCCTGTTTCACCCCAAACATCGCCGACTCAAGTCTCGTTCTCCACGGC
AATCGACTCCGCTTGGTCGAATTACATATAGAGGACACCACTCTCGGGGT
CATCAGACCTAATCTCGTTCTAGGACGGCCGTCTCGACTTGGGCCTGGCC
GTGGCTCGTGGCAGCCTCATGCAGGTAGACCGCACAATCGAAATCCGAGG
GGAAGAGAGGGTAGTGAGACAGCAGCGGAAGAAGCACAGCCGCGGGATAC
TGCTTATCAGCCAGCTGTTGAGAAAGGGTACCACCGAGGCAGCTGGAAAA
CCCATGCAATCTGTGTTTGCTGATGAAGTTGAGCTCCTCGAAACGGGTAG
AGAGCATGTTGAAGGCATCCGAGAGAGAGCATCGAAACGCGGGAAACGAC
AGCCTGCTGCTGCTGCTGCTGCTTCATCTGCTGCGGCGAAGAAGGCGAAG
CGCAAGGGGGCGGACGCAGCTCTCTCCGACCCTCTAGCATTGGCTCATGA
TGGCGGGACTAGAAGCGGTGCTACCCCAGAGACTTCGCGGGAGGAAGCGG
TGAGTTTTGAGTCGCTGCTGAGTTGCTGCTGAAAGGTGTTCTAGTGCTTG
ATTGACTGCGCTCTACCTGGCGCGCCAGTTCATGCCAGCTGCTCTTGTCT
TGAATTTGAAATTGGGTACACGCGCTGCCCGTCCTCTTCGCCCCCAAATT
GAGGTCCATTCCACCACGTCGATATCTTAAGCACAGCAAGGGCATTGTAA
GCTGCACGGGTATGGTGACTGCTGTAACTGCTGCAATGACGCTGCTACCG
TGGTGTTTATTTGTCGCTCACTCATATGTTCCCCCGACTCCTCCAATATA
ACTACTGATACGTCGTACGCAGGTTGCGGACGAGCGTCGCTCTAGCGCGA
TGGATTTGATGCAGAACGACCCCGTGTTGATAGAGCGAGTACGGGCCATG
CTGGATACTGGCGCGGCAGAGCAGGCAGCAGCTAAGGTGGCTGCGATCGA
CGCGGCCAACACTCGTGCACTCCGCGCGTCGTTGCAAGCGCTGAAGCAGC
ACTGCAACAGCTGTAGGGCGGACCACTTTCCAGACAGCGCTCGCTGCAGC
AGCCGGAGCGGGAGAGCACACGTGTCGGACGTGTGCCACGCCGGCCAGCG
GTGCAAGCCCGTTGAGTCTGGTGGAGTGAGCCTTGCCGAGCGAGCCAACA
GTCTCGGCATTCGGCACGAGACTTTCAGCGACGCACGGCGGCGGATGTAC
AACACGAACCACGACATCGCCCCCAAGATCGCTGCGAGTGAGGGATACTA
CGAGTACAACGAGCGCAAGACACGGAGTGACGTGACGAATCCCGGGAACA
GAGGAGGAGCAGGGGGAGGTGCAGGATACCTATAGTCTTGTGTGGGCTAC
TAGTGTGGGGGTGCAGAACCCAAAGGCTACGCTGTTTGAAGATTCCGTCG
TGGGGAGGTCGGCCGGCCGCGAGAGGTCGTACAGCGGTCGGGAACAGCGG
GTAGACTAGTCATAGCTCCGGCTGTCAGTTAGAGCAGCTCTTGCGGAGGT
AGCGCCTGCACCGCTGTGTTACAGGCCAAATTTTTCTTTTTTTTTAAGGA
CCACCTCTTATAATAGCTATGCATACGAGCATCCGGATGGATCTCGAAGA
TACATGCATGTCGATTTTCGCAACATCCGGTGGCTCATTTTTTGGATAAA
TTCCT
back to top

Coding sequence (CDS) from alignment at Scaffold_210:160357..162061+

>EsuBft1205_8a-0001 ID=EsuBft1205_8a-0001|Name=EsuBft1205_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=894bp|location=Sequence derived from alignment at Scaffold_210:160357..162061+ (Ectocarpus subulatus male Bft15b)
ATGCAGGTAGACCGCACAATCGAAATCCGAGGGGAAGAGAGGGTAGTGAG
ACAGCAGCGGAAGAAGCACAGCCGCGGGATACTGCTTATCAGCCAGCTGT
TGAGAAAGGGTACCACCGAGGCAGCTGGAAAACCCATGCAATCTGTGTTT
GCTGATGAAGTTGAGCTCCTCGAAACGGGTAGAGAGCATGTTGAAGGCAT
CCGAGAGAGAGCATCGAAACGCGGGAAACGACAGCCTGCTGCTGCTGCTG
CTGCTTCATCTGCTGCGGCGAAGAAGGCGAAGCGCAAGGGGGCGGACGCA
GCTCTCTCCGACCCTCTAGCATTGGCTCATGATGGCGGGACTAGAAGCGG
TGCTACCCCAGAGACTTCGCGGGAGGAAGCGGTTGCGGACGAGCGTCGCT
CTAGCGCGATGGATTTGATGCAGAACGACCCCGTGTTGATAGAGCGAGTA
CGGGCCATGCTGGATACTGGCGCGGCAGAGCAGGCAGCAGCTAAGGTGGC
TGCGATCGACGCGGCCAACACTCGTGCACTCCGCGCGTCGTTGCAAGCGC
TGAAGCAGCACTGCAACAGCTGTAGGGCGGACCACTTTCCAGACAGCGCT
CGCTGCAGCAGCCGGAGCGGGAGAGCACACGTGTCGGACGTGTGCCACGC
CGGCCAGCGGTGCAAGCCCGTTGAGTCTGGTGGAGTGAGCCTTGCCGAGC
GAGCCAACAGTCTCGGCATTCGGCACGAGACTTTCAGCGACGCACGGCGG
CGGATGTACAACACGAACCACGACATCGCCCCCAAGATCGCTGCGAGTGA
GGGATACTACGAGTACAACGAGCGCAAGACACGGAGTGACGTGACGAATC
CCGGGAACAGAGGAGGAGCAGGGGGAGGTGCAGGATACCTATAG
back to top