EsuBft119_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft119_9a-0001
Unique NameEsuBft119_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:419621..421198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft119_9
Protein domainsIPR002048
Protein domainsIPR011992
Protein domainsIPR018247
Protein domainsSSF47473
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length49
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0005509
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft119_9aEsuBft119_9aEctocarpus subulatus male Bft15bgeneScaffold_420 419621..421198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_9a-0001EsuBft119_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 419621..421198 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_9a-0001-exonagat-exon-66630Ectocarpus subulatus male Bft15bexonScaffold_420 419621..419771 -
EsuBft119_9a-0001-exonagat-exon-66631Ectocarpus subulatus male Bft15bexonScaffold_420 420015..420101 -
EsuBft119_9a-0001-exonagat-exon-66628Ectocarpus subulatus male Bft15bexonScaffold_420 420494..420529 -
EsuBft119_9a-0001-exonEsuBft119_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 420711..420869 -
EsuBft119_9a-0001-exonagat-exon-66629Ectocarpus subulatus male Bft15bexonScaffold_420 421140..421198 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_9a-0001-cdsEsuBft119_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 419621..419771 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft119_9a-0001 ID=EsuBft119_9a-0001|Name=EsuBft119_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=492bp|location=Sequence derived from alignment at Scaffold_420:419621..421198- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAAGGCTCACGGGCTATCACCCGACGACTGGCTGCAGGAGCTCCT
GTCCAGAAGGAAACAGGATCGCTTGACGACGTTCGAAATGGGCGAGAGTA
TCCGTGGCTATAACAGGGCGAAGCCCGCGTGGGTCAGGTCCCACAAGCAT
TGGCTACGCGAGTTCATGATCTCGGAGAAGGACCTTCGCTGGTGCCAGCG
ATTCGTGGACCCCGACGGGCTCATTGCGGTCGTGTCTTTCTCGTACGGGT
GCCGGAACACCGACATCGACGAGGAGGAGCTTTCAAACGCCGTTAGATCT
ACGCTCGACGGGAAGCCCCGCATGTCATTGGAAGAGAGCCGGGCGGTGGA
ACTCATCCTGGAATTCGAAAATTTCATATCGACCAACCGTATCCGGCTGG
TCGACCTCTTTGAGAGGGTCGACAAAGACAAGGGAGGAACCGTGGACGGC
GAAGAGCTCAGGGAGTTTTTGAAGCTTGGGAGGAAAACGTGA
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protein sequence of EsuBft119_9a-0001

>EsuBft119_9 ID=EsuBft119_9|Name=EsuBft119_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=163bp
MLKAHGLSPDDWLQELLSRRKQDRLTTFEMGESIRGYNRAKPAWVRSHKH
WLREFMISEKDLRWCQRFVDPDGLIAVVSFSYGCRNTDIDEEELSNAVRS
TLDGKPRMSLEESRAVELILEFENFISTNRIRLVDLFERVDKDKGGTVDG
EELREFLKLGRKT
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mRNA from alignment at Scaffold_420:419621..421198-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft119_9a-0001 ID=EsuBft119_9a-0001|Name=EsuBft119_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1578bp|location=Sequence derived from alignment at Scaffold_420:419621..421198- (Ectocarpus subulatus male Bft15b)
ATGCTCAAGGCTCACGGGCTATCACCCGACGACTGGCTGCAGGAGCTCCT
GTCCAGAAGGTTAGCTGCTATAGGGTGTGAGCGTTCCAACTCCGAAGCAC
AGGGCGCATAGTTTTTCAACAACTCTGCCTCGTAAATCAGCTAGACCCGG
AATTTGACATTCGGCATGGGGCCGGGGCTTTCTACATCAAGAACAATACG
GTGTGGCTGATTTTTCCCCTCCCACCCTTCACAGTCGGAACTCATGTATG
TCTGACTCTGATATCCGCTCCAGTCACCGTCCCCACCCTTCCGCCTTTTG
CGTCTGTTCTATCCTTCCCTCTAACCTAGGAAACAGGATCGCTTGACGAC
GTTCGAAATGGGCGAGAGTATCCGTGGCTATAACAGGGCGAAGCCCGCGT
GGGTCAGGTCCCACAAGCATTGGCTACGCGAGTTCATGATCTCGGAGAAG
GACCTTCGCTGGTGCCAGCGATTCGTGGACCCCGACGGGTGAGAACACGG
AGGCATATACCAGGCTCAAGGCTACGGGGTGATTTGTGTCCGAGTGCCTA
TCACCCATTCTTTGTCGGTTGAAGTGAAAATATCTTGCAGGTCTTTGTTG
CTCAACCTTGAGCGAGGCAAAAATTTCAAGGGCAGTCAGTGCCAGGACTA
ATTTGGTACGTGTCATCAGGCTCATTGCGGTCGTGTCTTTCTCGTACGGG
TGCCGGTACGTGGGTCCTTTCAGCTTGGAGAGCCGGCGTCAATCGGCTCG
TATCCTGTCATTTCTACGCCGCAGCGGCGTGCCCGCGTAACCGGTTATCA
CGTGCACTACTGCCCCGCACAATGAGTTGTCGCATGTCTCTCCTTCAAAG
CGGCTGCCGATACGCGTGCCGCATGGTAGACAGTTGCAGCTTGCTTCTTT
TGGTAGACTATCGCTTCCTCATCTTCTGCGGAATGGTTGTTGATGGAGGT
CATTTCTAATTGTGAAAGGGAACGGGGACGGAGGACAATCTGGTGCAGGA
ATATGTCCACCTGTTCGAAAATCACAGAGCATGCGCTCCGTCGACCTTTG
TCGTTGGGGAACCGTCGTCCACATCGGAAAAATGTGCAATGCATCAGGAA
CACCGACATCGACGAGGAGGAGCTTTCAAACGCCGTTAGATCTACGCTCG
ACGGGAAGCCCCGCATGTCATTGGAAGAGAGCCGGTGAGAAGGGTCGTCG
AATAGGAAGCTATGCGGACACCATATGGTAGATCGTGTTCAGCGCCGGCA
GCAGAGATTTGTTTCATTCGCCTGCAGCGTATACCCCGACAACTCGGGAA
GACTGCCAGCCTAGGGTTTCCGGTGAACGCATGATGCGATTGGATGTTTT
TCTTCTGCCCGGTGTTCCCCCCCGCTCGCCCTCCCCGTGACACCCGACGG
CATTGGCTCCCCCGCCCGAAAAAAAAGGGCGGTGGAACTCATCCTGGAAT
TCGAAAATTTCATATCGACCAACCGTATCCGGCTGGTCGACCTCTTTGAG
AGGGTCGACAAAGACAAGGGAGGAACCGTGGACGGCGAAGAGCTCAGGGA
GTTTTTGAAGCTTGGGAGGAAAACGTGA
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Coding sequence (CDS) from alignment at Scaffold_420:419621..421198-

>EsuBft119_9a-0001 ID=EsuBft119_9a-0001|Name=EsuBft119_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=492bp|location=Sequence derived from alignment at Scaffold_420:419621..421198- (Ectocarpus subulatus male Bft15b)
ATGCTCAAGGCTCACGGGCTATCACCCGACGACTGGCTGCAGGAGCTCCT
GTCCAGAAGGAAACAGGATCGCTTGACGACGTTCGAAATGGGCGAGAGTA
TCCGTGGCTATAACAGGGCGAAGCCCGCGTGGGTCAGGTCCCACAAGCAT
TGGCTACGCGAGTTCATGATCTCGGAGAAGGACCTTCGCTGGTGCCAGCG
ATTCGTGGACCCCGACGGGCTCATTGCGGTCGTGTCTTTCTCGTACGGGT
GCCGGAACACCGACATCGACGAGGAGGAGCTTTCAAACGCCGTTAGATCT
ACGCTCGACGGGAAGCCCCGCATGTCATTGGAAGAGAGCCGGGCGGTGGA
ACTCATCCTGGAATTCGAAAATTTCATATCGACCAACCGTATCCGGCTGG
TCGACCTCTTTGAGAGGGTCGACAAAGACAAGGGAGGAACCGTGGACGGC
GAAGAGCTCAGGGAGTTTTTGAAGCTTGGGAGGAAAACGTGA
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