Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft119_5 |
| Protein domains | TMhelix |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 210 |
| Hectar predicted targeting category | signal peptide |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft119_5a-0001 ID=EsuBft119_5a-0001|Name=EsuBft119_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2106bp|location=Sequence derived from alignment at Scaffold_420:333531..335636+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTTTTCCTGCTCCATGGTCGTCTTCGTCCTCCTTTCTTCCCTTTCCCT
TTCCTTCGTCTTCGTCACTCCCAAAAGAATTACCCTCACTACTATCGTTG
TCGCAGAAATCCCAACCGATTGGCTTTGGTGGAAGTTGGTCGATCAGTAG
CCCATGATGTTTGAACACATCGCGAGTTCGCATCGAAAGAAAACGAGCTA
GCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTATGAAACGCTTTCAGG
CGAACTAAGGCTCTTTCGTCTTCAAAATTCCCCCGGCAAAACGCTTCGTG
CGCCAAATGGTTGGCGATAGCCACGATGAGTCGATTGGTGCCTTTGCCAA
GACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGGTAGATCTAGACGGG
TTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCAGCTCGATCTTCGAG
GGCTGATCCTGGCTTAAGGATCGACTTGTCGATGCTTCGACCTGCTGATG
GGTTGACGATTGTTACGTCGATCAGAATGGACTTGGTGCAGAGGTCCTCT
TCCTTCTCTCCTGCGTGTAATCCTGGGGGGATTACCAAATCCATCTTGTA
TAGCCCCTTTCCCCTACCAGTGCCTGTGGTAAAAGGGGAAGAATCCTCAA
CGGCGATGGGCATATGGCACTCGCGCAGTGTCTTGAGGACCACTCGAACC
ATCCTGTTATGGAGGAAGGTTGAGGCGCCGGTCTTGGTGCAGACGAGGGA
GTGGGCTCGGCTCAAGCGGTCCTTGCATGGTAACAATGCACCTGCACCAC
AAAGTTTGCCTGTGTTGCAGTCTGCTCGATCGTGACTCCCCAGTACACGA
CCGATTGACTCTCGATATAGATCAGGCAGCATTCTTTCATCTGCTGACAA
CCCTTGCGTTGTCAACCACGACAAAACTCCCTTGCCTTTCGCTTCCTCCA
AGCGGATTAACGCCCTCTTCTTTGGCGTTTCCTCGCCTACTACTTTCTGC
AAGTCTGTCTCCACCATGTGGCGCACTGCTGCATGAAGAGGTTTCGAAAG
GAGAGCTTGGGCTCCAAAGACTTGGTAGTGTTGACCAAATTCATTTCGGC
TGAAGGTAGACGGTGGTTGATGTTCTACGTCAGGGTTTCCATCTTCACGG
GGTTTTCCCGCCTTCCCTGCTTCCAACAAGTAAACTCCTTTGAGGGCGGG
GGTTAACTCATCACTTGTGGCAAGTTTAGCCCATGACTGCCCAACAGCTT
TTTCAAGCTTGTCTTTGGTGATTATTTCCTCTAGCTTCTTCAGCGAGTCA
ATCAGAGCCAACCCTGTCGGTAGCTGGGCAAGCCGGGGTAGACATTGCTC
AACTGTGTATCCTGTCGATGCTTGCACTGACTTGGAGAACACCAGCGCTT
GCCCTGCCACAAAAGCCGATTCTCGAATGAGAACATTGCTCGTGATTCCT
AGTCCTCCTTCTCGCATGGGTAGGTGCACCTGCGCCCGAGCTGTCCCTTT
GAAGAAATCTACCTCCTCGCTCTTCGTCGGGTCTGCGCGTACCTCTTTGA
CCGTTGGTATTCTCATGCTGTCGGCCATCTTGCCAAGGACGATCTTACTC
ATTGCCCACATCATCATGTTGTCATGTATTTTTGCGGCAGAGTTGGTGAT
AGACGGTGCAATCGTCCTCAGCAGATGGAACAAACGTGGCACACCAGATA
AACGCAGCAGTTGATAGCTGGCTTGAGGGTCGTCAAGCGTTGCTAGGCGG
AGTATCAATTCCGCCGGGTCACCACGGGCGATTTTGGAAACGAAATTCCT
CTGGAACTCCTCTGTTCCTACTGGGATCCCGACAACTGGCATGCCACCTT
CAGCAACTGACAGACCAATTTTCGTCAATTGTTGCTGTTCGTCGTTTGTC
AAAGAGGACATGCAAAGACCTTCCGGGAAAAGCACTTTGGATTTCGGGAG
ACTGAGCTCAATGCCTTTTTGGGAGAGACGTTCCTGAATCCAATTCGTTA
CAGTGGATATGGCCTGCATGTTCCTAGCCAAACCTGGTGGAAGATGTGCT
TGGAGGTCGTCGACGTATCCGATGAGTTTCACTCCTGGCACTGGTGGCTT
GTTGTT back to topprotein sequence of EsuBft119_5a-0001 >EsuBft119_5 ID=EsuBft119_5|Name=EsuBft119_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MFSCSMVVFVLLSSLSLSFVFVTPKRITLTTIVVAEIPTDWLWWKLVDQ back to topmRNA from alignment at Scaffold_420:333531..335636+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft119_5a-0001 ID=EsuBft119_5a-0001|Name=EsuBft119_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2106bp|location=Sequence derived from alignment at Scaffold_420:333531..335636+ (Ectocarpus subulatus male Bft15b)
ATGTTTTCCTGCTCCATGGTCGTCTTCGTCCTCCTTTCTTCCCTTTCCCT
TTCCTTCGTCTTCGTCACTCCCAAAAGAATTACCCTCACTACTATCGTTG
TCGCAGAAATCCCAACCGATTGGCTTTGGTGGAAGTTGGTCGATCAGTAG
CCCATGATGTTTGAACACATCGCGAGTTCGCATCGAAAGAAAACGAGCTA
GCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTATGAAACGCTTTCAGG
CGAACTAAGGCTCTTTCGTCTTCAAAATTCCCCCGGCAAAACGCTTCGTG
CGCCAAATGGTTGGCGATAGCCACGATGAGTCGATTGGTGCCTTTGCCAA
GACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGGTAGATCTAGACGGG
TTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCAGCTCGATCTTCGAG
GGCTGATCCTGGCTTAAGGATCGACTTGTCGATGCTTCGACCTGCTGATG
GGTTGACGATTGTTACGTCGATCAGAATGGACTTGGTGCAGAGGTCCTCT
TCCTTCTCTCCTGCGTGTAATCCTGGGGGGATTACCAAATCCATCTTGTA
TAGCCCCTTTCCCCTACCAGTGCCTGTGGTAAAAGGGGAAGAATCCTCAA
CGGCGATGGGCATATGGCACTCGCGCAGTGTCTTGAGGACCACTCGAACC
ATCCTGTTATGGAGGAAGGTTGAGGCGCCGGTCTTGGTGCAGACGAGGGA
GTGGGCTCGGCTCAAGCGGTCCTTGCATGGTAACAATGCACCTGCACCAC
AAAGTTTGCCTGTGTTGCAGTCTGCTCGATCGTGACTCCCCAGTACACGA
CCGATTGACTCTCGATATAGATCAGGCAGCATTCTTTCATCTGCTGACAA
CCCTTGCGTTGTCAACCACGACAAAACTCCCTTGCCTTTCGCTTCCTCCA
AGCGGATTAACGCCCTCTTCTTTGGCGTTTCCTCGCCTACTACTTTCTGC
AAGTCTGTCTCCACCATGTGGCGCACTGCTGCATGAAGAGGTTTCGAAAG
GAGAGCTTGGGCTCCAAAGACTTGGTAGTGTTGACCAAATTCATTTCGGC
TGAAGGTAGACGGTGGTTGATGTTCTACGTCAGGGTTTCCATCTTCACGG
GGTTTTCCCGCCTTCCCTGCTTCCAACAAGTAAACTCCTTTGAGGGCGGG
GGTTAACTCATCACTTGTGGCAAGTTTAGCCCATGACTGCCCAACAGCTT
TTTCAAGCTTGTCTTTGGTGATTATTTCCTCTAGCTTCTTCAGCGAGTCA
ATCAGAGCCAACCCTGTCGGTAGCTGGGCAAGCCGGGGTAGACATTGCTC
AACTGTGTATCCTGTCGATGCTTGCACTGACTTGGAGAACACCAGCGCTT
GCCCTGCCACAAAAGCCGATTCTCGAATGAGAACATTGCTCGTGATTCCT
AGTCCTCCTTCTCGCATGGGTAGGTGCACCTGCGCCCGAGCTGTCCCTTT
GAAGAAATCTACCTCCTCGCTCTTCGTCGGGTCTGCGCGTACCTCTTTGA
CCGTTGGTATTCTCATGCTGTCGGCCATCTTGCCAAGGACGATCTTACTC
ATTGCCCACATCATCATGTTGTCATGTATTTTTGCGGCAGAGTTGGTGAT
AGACGGTGCAATCGTCCTCAGCAGATGGAACAAACGTGGCACACCAGATA
AACGCAGCAGTTGATAGCTGGCTTGAGGGTCGTCAAGCGTTGCTAGGCGG
AGTATCAATTCCGCCGGGTCACCACGGGCGATTTTGGAAACGAAATTCCT
CTGGAACTCCTCTGTTCCTACTGGGATCCCGACAACTGGCATGCCACCTT
CAGCAACTGACAGACCAATTTTCGTCAATTGTTGCTGTTCGTCGTTTGTC
AAAGAGGACATGCAAAGACCTTCCGGGAAAAGCACTTTGGATTTCGGGAG
ACTGAGCTCAATGCCTTTTTGGGAGAGACGTTCCTGAATCCAATTCGTTA
CAGTGGATATGGCCTGCATGTTCCTAGCCAAACCTGGTGGAAGATGTGCT
TGGAGGTCGTCGACGTATCCGATGAGTTTCACTCCTGGCACTGGTGGCTT
GTTGTT back to topCoding sequence (CDS) from alignment at Scaffold_420:333531..335636+ >EsuBft119_5a-0001 ID=EsuBft119_5a-0001|Name=EsuBft119_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_420:333531..335636+ (Ectocarpus subulatus male Bft15b)
ATGTTTTCCTGCTCCATGGTCGTCTTCGTCCTCCTTTCTTCCCTTTCCCT
TTCCTTCGTCTTCGTCACTCCCAAAAGAATTACCCTCACTACTATCGTTG
TCGCAGAAATCCCAACCGATTGGCTTTGGTGGAAGTTGGTCGATCAGTAG back to top
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