EsuBft119_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft119_2a-0001
Unique NameEsuBft119_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:253201..253877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft119_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length50
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft119_2aEsuBft119_2aEctocarpus subulatus male Bft15bgeneScaffold_420 253201..253877 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_2a-0001-exonagat-exon-66584Ectocarpus subulatus male Bft15bexonScaffold_420 253201..253325 -
EsuBft119_2a-0001-exonEsuBft119_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 253494..253877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_2a-0001-cdsEsuBft119_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 253201..253325 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_2a-0001-exonagat-five_prime_utr-1263Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_420 253858..253877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_2a-0001EsuBft119_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 253201..253857 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft119_2a-0001 ID=EsuBft119_2a-0001|Name=EsuBft119_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=509bp|location=Sequence derived from alignment at Scaffold_420:253201..253877- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAACAACGCCACCAACCACCATGTCTAGCTTCTTCGACGACAACTGCCCT
TCCAAGAGAGCCAAGCCCGGACAGACCTCTCACGGTGCCGCTTCCCCCGA
CGGCTTCAAGATTGTCGGTGAGGTTTTCCCTGGTCGGCTGTGCCCGGAGG
ACAACAAGGACCTCCTGAAACGCTACACCAACGGTCGCCTCTTCGTCGTC
TGCCTCGGCAACATCAAGGACGACCCCTCCACCTGCCAGTTCACCGCGAA
CTGTTTCGGAAAAGACCGTGTCAAGCCCGGCGAGGAGTCGAAGATCGCCT
GCATCTTCTGCACGGTGCTGGTCGAGCACACCCTCTCGCTCGGCAGGAGC
ACCGGCCGCACGGATCCCGTGACGGGAAAACTGATCTACCAGAACGTCCA
CGTCTACTTTGACACCTGCTGGGGAAAGAAGAGAGCCTTCGACCCCAAGA
CGAACAAGGAAGTGCTGTCTCACTTCACAACCGCCCCCGCTTCCCTCGTC
GGGGTATGA
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protein sequence of EsuBft119_2a-0001

>EsuBft119_2 ID=EsuBft119_2|Name=EsuBft119_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=162bp
MSSFFDDNCPSKRAKPGQTSHGAASPDGFKIVGEVFPGRLCPEDNKDLLK
RYTNGRLFVVCLGNIKDDPSTCQFTANCFGKDRVKPGEESKIACIFCTVL
VEHTLSLGRSTGRTDPVTGKLIYQNVHVYFDTCWGKKRAFDPKTNKEVLS
HFTTAPASLVGV
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mRNA from alignment at Scaffold_420:253201..253877-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft119_2a-0001 ID=EsuBft119_2a-0001|Name=EsuBft119_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=677bp|location=Sequence derived from alignment at Scaffold_420:253201..253877- (Ectocarpus subulatus male Bft15b)
CAACAACGCCACCAACCACCATGTCTAGCTTCTTCGACGACAACTGCCCT
TCCAAGAGAGCCAAGCCCGGACAGACCTCTCACGGTGCCGCTTCCCCCGA
CGGCTTCAAGATTGTCGGTGAGGTTTTCCCTGGTCGGCTGTGCCCGGAGG
ACAACAAGGACCTCCTGAAACGCTACACCAACGGTCGCCTCTTCGTCGTC
TGCCTCGGCAACATCAAGGACGACCCCTCCACCTGCCAGTTCACCGCGAA
CTGTTTCGGAAAAGACCGTGTCAAGCCCGGCGAGGAGTCGAAGATCGCCT
GCATCTTCTGCACGGTGCTGGTCGAGCACACCCTCTCGCTCGGCAGGAGC
ACCGGCCGCACGGATCCCGTGACGGGAAAACTGAGTGAGTCTGTCTGTTT
TTTTTTTGGATGCCCGCGTTGCCATCGTCTTAGTATACCGCGTCAAATAA
ACCTAGTTTTTGCGTGACTCTGCTGTGCTAGACTACTCATCTTTTACCAT
GTCCCGTGTGTTCTCTTCTTCTTGCCCTTTCCCCGTTCACTTTCCTCATC
AGTCTACCAGAACGTCCACGTCTACTTTGACACCTGCTGGGGAAAGAAGA
GAGCCTTCGACCCCAAGACGAACAAGGAAGTGCTGTCTCACTTCACAACC
GCCCCCGCTTCCCTCGTCGGGGTATGA
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Coding sequence (CDS) from alignment at Scaffold_420:253201..253877-

>EsuBft119_2a-0001 ID=EsuBft119_2a-0001|Name=EsuBft119_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=489bp|location=Sequence derived from alignment at Scaffold_420:253201..253877- (Ectocarpus subulatus male Bft15b)
ATGTCTAGCTTCTTCGACGACAACTGCCCTTCCAAGAGAGCCAAGCCCGG
ACAGACCTCTCACGGTGCCGCTTCCCCCGACGGCTTCAAGATTGTCGGTG
AGGTTTTCCCTGGTCGGCTGTGCCCGGAGGACAACAAGGACCTCCTGAAA
CGCTACACCAACGGTCGCCTCTTCGTCGTCTGCCTCGGCAACATCAAGGA
CGACCCCTCCACCTGCCAGTTCACCGCGAACTGTTTCGGAAAAGACCGTG
TCAAGCCCGGCGAGGAGTCGAAGATCGCCTGCATCTTCTGCACGGTGCTG
GTCGAGCACACCCTCTCGCTCGGCAGGAGCACCGGCCGCACGGATCCCGT
GACGGGAAAACTGATCTACCAGAACGTCCACGTCTACTTTGACACCTGCT
GGGGAAAGAAGAGAGCCTTCGACCCCAAGACGAACAAGGAAGTGCTGTCT
CACTTCACAACCGCCCCCGCTTCCCTCGTCGGGGTATGA
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