EsuBft119_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft119_18a-0001
Unique Name	EsuBft119_18a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_420	contig	Scaffold_420:498430..501106 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	120017.I2FSM7
ProteomeId	EsuBft119_18
Protein domains	Coil
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	4
Max annot lvl	4751\|Fungi
Length	1392
Hectar predicted targeting category	other localisation
Evalue	4.51e-13
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3NUZ7@4751\|Fungi,3UY7N@5204\|Basidiomycota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Encoded by
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft119_18a	EsuBft119_18a	Ectocarpus subulatus male Bft15b	gene	Scaffold_420 498430..501106 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft119_18a-0001-exon	agat-exon-66675	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 498430..498858 +
EsuBft119_18a-0001-exon	agat-exon-66676	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 498915..499200 +
EsuBft119_18a-0001-exon	EsuBft119_18a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 499405..499450 +
EsuBft119_18a-0001-exon	agat-exon-66677	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 500476..501106 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft119_18a-0001-cds	EsuBft119_18a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_420 498430..498858 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft119_18a-0001	EsuBft119_18	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_420 498430..501106 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_420:498430..501106+
coding sequence from alignment at Scaffold_420:498430..501106+

spliced messenger RNA

>EsuBft119_18a-0001 ID=EsuBft119_18a-0001|Name=EsuBft119_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1392bp|location=Sequence derived from alignment at Scaffold_420:498430..501106+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTGCTGGCTCAAGCAAACGAAGACGTCCTCCTCTCCATGCTGGA
TGCTCGGCGAGTCATGAACGGCAAGACAATGCTCCGGTCAGGATTGAAGG
GGGGCGGCGAGAAGGGGGACAGAGGCGAGCAGCTCGCGAGGAGTGAGGGC
GTGGTAGGGAGCACGGGAAAGTTGCCGGAGGTGGACATCGGCGAGGAGGG
ACGCATGGGGAATGGTTGGTCGATCGGTCCGTCTGAGCGGGGCGTTCCGC
TCGGACTTGTGGCGCGTCTTGCGACGCGCGACGACCTCGACTCAGCTGTG
CGCGAGACGGAGCCGCCTCTCTTGCGACCCGACATGCCGCGCTGCCACGC
AAAGGACCGCCGAGTACCCCAGACTTTCAAGAGGCAAAGCAGAGCGAACA
AACCGAACAGTTCATGGATGCGGCCAAGCCGAATAGACAACTGCATCAAG
TCGAAGTTGATTTTTGATTGGAAGGTAGATGCGTTCGGCTTTCCTACGAA
GGCCAAGGCTAGACTTGTTGCGAGAGGAGACATGCAGAAGGAGTTCATTG
ACTTTGGTGACTTGTATGCACCTACTGTAGTTTCATCTAGTGTTCGTATG
TTGGCAGCTTTGGCGTGTGAGCTTGACTTGGAGTTGTGTCACTTCGATGT
CGACCAGGCTTTTGTGAGGGCCCCTCTCAAGGAAGACATTTGCATGCGAC
TGCCGGAAGGATGTGTGGGGACGAAGGAGAAGTGTGATCAATTCGGCAAG
GACCTGGAAGGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCC
AACGGGAGAGACCGCCGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTG
CTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGGCAGAGAGGCTGGTAC
ACGAGCGAAGCGCAGCACGAGATCTCTGAAGCGTCGAAGGAGATCAAGGC
GACCCAGCAGCAGTTGCGTGGGGCCTCAAAGAACAGCGCCTGCGAGGCAA
CCCTGAAGGCGATGCTCAAAGCGGCGCGGAAGAAGCGCAGCATCGCGAGG
TGGAGAGCACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGGGAAATTGCCAACAGAAAGGCCGTCGGCCGGACGACCTACCGG
CTGAGCTGATCGAGCTTTTCCTGCACGGAGATCAAGGTTTCCTCCGCGAA
TTCCACGCCATTGTCGTGGACGTGTGGCAGACTGGGGNNNNN

protein sequence of EsuBft119_18a-0001

>EsuBft119_18 ID=EsuBft119_18|Name=EsuBft119_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=464bp
MGLLAQANEDVLLSMLDARRVMNGKTMLRSGLKGGGEKGDRGEQLARSEG
VVGSTGKLPEVDIGEEGRMGNGWSIGPSERGVPLGLVARLATRDDLDSAV
RETEPPLLRPDMPRCHAKDRRVPQTFKRQSRANKPNSSWMRPSRIDNCIK
SKLIFDWKVDAFGFPTKAKARLVARGDMQKEFIDFGDLYAPTVVSSSVRM
LAALACELDLELCHFDVDQAFVRAPLKEDICMRLPEGCVGTKEKCDQFGK
DLEGASSRPPPTALRRPTGETAAELTATVMSAAAETAPLARCARGQRGWY
TSEAQHEISEASKEIKATQQQLRGASKNSACEATLKAMLKAARKKRSIAR
WRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXGNCQQKGRRPDDLPAELIELFLHGDQGFLRE
FHAIVVDVWQTGXX

mRNA from alignment at Scaffold_420:498430..501106+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft119_18a-0001 ID=EsuBft119_18a-0001|Name=EsuBft119_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2677bp|location=Sequence derived from alignment at Scaffold_420:498430..501106+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTGCTGGCTCAAGCAAACGAAGACGTCCTCCTCTCCATGCTGGA
TGCTCGGCGAGTCATGAACGGCAAGACAATGCTCCGGTCAGGATTGAAGG
GGGGCGGCGAGAAGGGGGACAGAGGCGAGCAGCTCGCGAGGAGTGAGGGC
GTGGTAGGGAGCACGGGAAAGTTGCCGGAGGTGGACATCGGCGAGGAGGG
ACGCATGGGGAATGGTTGGTCGATCGGTCCGTCTGAGCGGGGCGTTCCGC
TCGGACTTGTGGCGCGTCTTGCGACGCGCGACGACCTCGACTCAGCTGTG
CGCGAGACGGAGCCGCCTCTCTTGCGACCCGACATGCCGCGCTGCCACGC
AAAGGACCGCCGAGTACCCCAGACTTTCAAGAGGCAAAGCAGAGCGAACA
AACCGAACAGTTCATGGATGCGGCCAAGCGTGAGGTGTTTGGATTGCTAG
AAGCAGACGCGTTTAAGATTGTTGGACCGTAGCAGCGAATAGACAACTGC
ATCAAGTCGAAGTTGATTTTTGATTGGAAGGTAGATGCGTTCGGCTTTCC
TACGAAGGCCAAGGCTAGACTTGTTGCGAGAGGAGACATGCAGAAGGAGT
TCATTGACTTTGGTGACTTGTATGCACCTACTGTAGTTTCATCTAGTGTT
CGTATGTTGGCAGCTTTGGCGTGTGAGCTTGACTTGGAGTTGTGTCACTT
CGATGTCGACCAGGCTTTTGTGAGGGCCCCTCTCAAGGAAGACATTTGCA
TGCGACTGCCGGAAGGATGTGGTGCGTTGTCAGGGAAGTTAGTGCAGTTG
AACAAGAGTCTTTATGGCTTGAGGCAGGCATCTAGAGAGTGGTACGCCTT
ACTAAAGAAATGACTTTTGGCTTTGGGGTTCGAGCAGTGCATGACTGATT
CGTGTGTTTTTCGTCTAGTCGAAGAGGGGGGAGTAGTGTTGCTTTGCGTA
GCACATGTAGACGAGTTTTTTGCAGTGGGGACGAAGGAGAAGTGTGATCA
ATTCGGCAAGGACCTGGAAGGGTACGTGCCAGTGAAGTCTCTAGGGGAGT
TGAAGTGGTACTCCGGTTGCTATTACGAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTGGGAGAGAGATATGGTGTCGAGTGGGGGGGGGGCATTCCTTT
GCCCACCACCTGGAGACTTTGGGACTTTGACTTGGACGAGCCGAGCGTAG
AGTACGCTGTTCGCGCGCTGGTCGGTTCGCTGTTGTGGATTGCCTCGTGG
ACTAGGCCAGATATCGCGAATTCGGTGAGAGCAGTGGCGAGGTACTGTAG
TGCACCGAAATTGATCCACTGGAAGGCTGCACTTGGCATTTGAGGATATG
CAGTATGGACTAGTTATTTGGGGATTCCTTTTCAGAGGGGGACGGTTTCG
GGATTTTCTTTGATTGCGTTTGTCGAAGCGGATTACGCTTCACGTGCGGC
AGACCGTAGTAGGTCGGTTTCGGGAGGGGTAGTTGCGGCCGTGTATTCCC
CTGTATGAGGATAACGAAGGAGCTATCCAGATCGCAATACGCCCGATCTC
GACTTCCAACTCGAAGCACATCGACGTGCGGCATCACTTCCTCATGCAGC
TCGTAAATGAGAAGGAGGTAGAGACCATCCACGTAGCGTCGAAGTATCAG
CATGCCGACTTCCTCGCGAAGGCGCTACCTGAGAGAGAGTTTGTTTCCCA
CCGGGACTACGTGATGAACTTTAAGTGATTAGTCCGGGAGATCCTTTTTG
TTTTTGAGTCTTGTGTCTTTTGTTTTGTTTTCGATTTTTGGTTTTTGTGT
TGATTTGTTTGATTCTCTGAGAAATAAGATTGACCGGTGGAAATTGTCGC
AATTCTGGTTAAATGGTTGGCAATGATTCAAACCGATAGGAATTCTAACG
AATGTTTCTGGAAGGACAAACACCTACGGGACGCCTTCCAAAACAGGGCC
TCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACGGGAGAGACCGC
CGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTGCTGAGACCGCGCCGC
TGGCGAGGTGCGCACGAGGGCAGAGAGGCTGGTACACGAGCGAAGCGCAG
CACGAGATCTCTGAAGCGTCGAAGGAGATCAAGGCGACCCAGCAGCAGTT
GCGTGGGGCCTCAAAGAACAGCGCCTGCGAGGCAACCCTGAAGGCGATGC
TCAAAGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAATTG
CCAACAGAAAGGCCGTCGGCCGGACGACCTACCGGCTGAGCTGATCGAGC
TTTTCCTGCACGGAGATCAAGGTTTCCTCCGCGAATTCCACGCCATTGTC
GTGGACGTGTGGCAGACTGGGGNNNNN

Coding sequence (CDS) from alignment at Scaffold_420:498430..501106+

>EsuBft119_18a-0001 ID=EsuBft119_18a-0001|Name=EsuBft119_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1392bp|location=Sequence derived from alignment at Scaffold_420:498430..501106+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTGCTGGCTCAAGCAAACGAAGACGTCCTCCTCTCCATGCTGGA
TGCTCGGCGAGTCATGAACGGCAAGACAATGCTCCGGTCAGGATTGAAGG
GGGGCGGCGAGAAGGGGGACAGAGGCGAGCAGCTCGCGAGGAGTGAGGGC
GTGGTAGGGAGCACGGGAAAGTTGCCGGAGGTGGACATCGGCGAGGAGGG
ACGCATGGGGAATGGTTGGTCGATCGGTCCGTCTGAGCGGGGCGTTCCGC
TCGGACTTGTGGCGCGTCTTGCGACGCGCGACGACCTCGACTCAGCTGTG
CGCGAGACGGAGCCGCCTCTCTTGCGACCCGACATGCCGCGCTGCCACGC
AAAGGACCGCCGAGTACCCCAGACTTTCAAGAGGCAAAGCAGAGCGAACA
AACCGAACAGTTCATGGATGCGGCCAAGCCGAATAGACAACTGCATCAAG
TCGAAGTTGATTTTTGATTGGAAGGTAGATGCGTTCGGCTTTCCTACGAA
GGCCAAGGCTAGACTTGTTGCGAGAGGAGACATGCAGAAGGAGTTCATTG
ACTTTGGTGACTTGTATGCACCTACTGTAGTTTCATCTAGTGTTCGTATG
TTGGCAGCTTTGGCGTGTGAGCTTGACTTGGAGTTGTGTCACTTCGATGT
CGACCAGGCTTTTGTGAGGGCCCCTCTCAAGGAAGACATTTGCATGCGAC
TGCCGGAAGGATGTGTGGGGACGAAGGAGAAGTGTGATCAATTCGGCAAG
GACCTGGAAGGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCC
AACGGGAGAGACCGCCGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTG
CTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGGCAGAGAGGCTGGTAC
ACGAGCGAAGCGCAGCACGAGATCTCTGAAGCGTCGAAGGAGATCAAGGC
GACCCAGCAGCAGTTGCGTGGGGCCTCAAAGAACAGCGCCTGCGAGGCAA
CCCTGAAGGCGATGCTCAAAGCGGCGCGGAAGAAGCGCAGCATCGCGAGG
TGGAGAGCACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGGGAAATTGCCAACAGAAAGGCCGTCGGCCGGACGACCTACCGG
CTGAGCTGATCGAGCTTTTCCTGCACGGAGATCAAGGTTTCCTCCGCGAA
TTCCACGCCATTGTCGTGGACGTGTGGCAGACTGGGGNNNNN