EsuBft1192_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1192_7a-0001
Unique Name	EsuBft1192_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_82	contig	Scaffold_82:152591..156160 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1192_7
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	310
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1192_7a	EsuBft1192_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_82 152591..156160 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1192_7a-0001	EsuBft1192_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_82 155975..156127 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1192_7a-0001-exon	EsuBft1192_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_82 152591..154051 -
EsuBft1192_7a-0001-exon	agat-exon-21841	Ectocarpus subulatus male Bft15b	exon	Scaffold_82 154520..156160 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1192_7a-0001-exon	agat-three_prime_utr-1844	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_82 152591..154051 -
EsuBft1192_7a-0001-exon	agat-three_prime_utr-1845	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_82 154520..155974 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1192_7a-0001-cds	EsuBft1192_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_82 155975..156127 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1192_7a-0001-exon	agat-five_prime_utr-1226	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_82 156128..156160 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_82:152591..156160-
coding sequence from alignment at Scaffold_82:152591..156160-

spliced messenger RNA

>EsuBft1192_7a-0001 ID=EsuBft1192_7a-0001|Name=EsuBft1192_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3102bp|location=Sequence derived from alignment at Scaffold_82:152591..156160- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTAGGGGTCGTAAGGGTTCCGCAGTACGGCGCCATGAAGTTCACCGCGCA
GTCCGCAGCGCTGCTCACGGTGCTCGTGGCGGAGTTGCCGGAGGCTGGCG
CTCCACCCGCTGGTACGACGGACGCTGCGCCCTTCCTTGCCGCCTCGTAC
ACGTTTGTGAACAAGTCCAGCGGCAGAGCCGCCTGACGAACAAAAAGAAG
GGGGGGGAAAGCGTATCATTAGTTCAAAACTGTCGATCCTCGATGGAGAA
CTCCCGACACACGCAGAGGGCAACGCATTACGCGTGCGCAGAACGTCGGG
GAACAGCGAGCGAGAGAGAGAGAGAGAGAGGGANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTTTATCTTTTTCTGGCG
TTGTTTACCTTCCCGACAGCAGTCAAGTTTCGTTCCATGATCAGTTTTGC
TCCTTCCCTGTTTGGCAGGTAGCCTAAAGGCAGAGAGGGTGAATGGTACC
AGAGATGCAACGACGGTTCCGTGGGGACAACGCCAAAACAGCATCAGCAC
CAAGCTGTTGCAGTTTAGTACCTCGTCCTGCAGCACGACACCCACCGCTG
TTGAGGAGTGCTACGATGTGAAGGTTCACCAGCGAACGGCCGTGGTTAAT
TGGCGTACGCTGACCTTTCAACCACCAGACACACCACGTTTGTAATCGTC
AGGTTTAGGGTGTTTCCCTGCTGCAATTGCGTATTTTTTTTCCGACTTCA
TTTCTACGCCTCCGTTTACCCCGGGGAGATTGAGTTGTTTTGCCTGGAAT
CTTCGGTACATACTTTACACCAGAGTGTTCTTAGGCGGATGAAATGTTTC
TACGCATTTATTGATGGTCGTGTTCTTTTTTCTCTGGTGGGACAGCGTTT
CTTCTCGCACTTTCTTCTGCATGGTACTCAATTACTCGTTGCGTGGTGCG
CGTGATGACCGCTCAAAAATCTCTGGGACTTGCTCTTTTTCAGGGGCCTG
CAAATCCGAACAAAAAAACAGTCAGATTTTAGTGCATGAAAACTAACAGG
AACAACTTTCTAGCGGGGGTGTATTCCTCTTTGATTCATCATGCGGAACA
CACAAAAGTCCCACAGACCATGGGCAACACGAACACACAAGAGAGAGCGA
TCAAGCGCAGCGGAGTACAGCAGTAGGGCCTGCAGCAAAAACGCGACAAA
TAATACATTATGCAACAGAGCACACGCTCACGCACGCGCGAAAAGTCAGA
GCGACAACACAAACAAAAACGCACATGGATGCAAAAATCCAGCCCAATTA
TTCAGGTTGTACGCGAAACCGGCACTTCCTACCAAACGTCCTGACATTGA
TTGACCATGCCCTCTTGTGTCGCCCCCGGGAGGCAAACTCCCGAAGCACG
ACGTTTCTTCACGGAAACAACAAATGTCACCCAAACAACAACATCCCGCA
GATATTGTACCATTGCGTTTCCCTATAGACTCACCAACAGCACGCCTCGA
TTCACAAGGATTTTTTGCGCGATCTCCAGGACATCGATACCGGACGTGGC
GAACGTAATCATATCCACCACATAAGTGATGAAATTCTCGTGTTTCAAGG
ACTTCCCTGCTTTTCACCTATATACGAGTGTGTGTAGTTTGAAGACACGC
AAAAAACACTTGACGGTTGACGGCGCGTGCGAACAGACTCTGTATGTGGG
TCAGCGGCTTAGCGGTCGATACAAGTTGGTGATGCACGCAACCCGATGCC
GAGCACTAGGGAGGATGTCCCTTCTACACCTACCCCCTCTCTTTTTCTCT
TCCCCTGTCTATCCGTATGCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTC
TCCCACACATGCACGCACACACCCTCTCCCTCTTTCAAACAACCACCCTG
GTCGCTGTCTCACTCTCTCACTCTCTCACCTCATCATGTTCGGGTGTGGG
GGTTTCACGCAGAAACCGCCTCGCGTCTTCAACGAAGTACTTGGTACTCA
GTTGTGGACGGTGGCCCGGCTTGCCGACGTCCTCCCGCTTTTTCTTCTTG
CCCTTTCCACGCTGCTTCTTCTTCTTCTTCTTCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCGTCCTCCTCGTCCTCCTCGTCCTCCTCCT
CCTCCTCGTCGTCTCCGCTGGACACGGCAATCGTTCGCCGCTTCTTCTCT
TGTTGCTCCCGCCCCCTGTCGCTCTGAGATCCCTTGCTGCTGCTGCCTTG
GCTGAGGGATAAACTTGATCTCTTTTCTTGGCCGTGGACTTCCTTTCCCC
GCGTTCGGCTTCGGCTTCCTGGTTCGCTCTAACCTTCGGCGACGGGTTTC
GAGGCCGCGGGTGGGGTCGACTCATTATTTTTCTCGCCGCGTGGACGGCG
GGGCGGGAGGGACGGGAGGAGGGCAGATGGTGCTCGTGGCAGATGCGTAT
CGCCAATTCTTGACCAATTTAAGCAGGGGGTCCGCAGATATACCCCATGT
CAAAATATGTGGTACTAGAAATAAAGTAGGAAACCAACTGCGTACCTCGG
CGGCCTTTGTTGGCCTTGGCCTTGTGCAAGCCTCGCTTGCTTGGCCGGAA
AGCCGAGGATCTCTCTTCCTCCCTGCCTGGCGTGGTTCACGCCATTGCCT
TCTTCCTCATGAGTACGACAAATTCTAGTGGGAGGCGTTTGGGCAGAGGT
TTTTGGTGCCAATCTTGCAATTTGAGATTTTCCACTAAGCGCAACTTGGA
TCGACATCACCGGAAGAAGTCGTCGTGTCGGGCAGCCAGCACGAGGAGCT
TGGAAGAGGTGCCGCCCTGCTCCAAGCGTCGCCGCAGGTCCGAAAGGGAG
TCAGATGCAGGAGCTTCAAGTTACGACGCTGGCAGCGAGGCGGACGACGA
TCATGGTTCTATCGATGATATGGACACCGGTGCTCTTCCAGGCAACAACA
ACGCCGGCAGCAGCAGCGATGACCACGCCCGCGGCGGCGGCGGCGGCAGT
AGCAGCAGCAGCGACGACGACGATGACGGTGGTGGCGGTAGAAGCAGCAG
CA

protein sequence of EsuBft1192_7a-0001

>EsuBft1192_7 ID=EsuBft1192_7|Name=EsuBft1192_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MKFTAQSAALLTVLVAELPEAGAPPAGTTDAAPFLAASYTFVNKSSGRAA

mRNA from alignment at Scaffold_82:152591..156160-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1192_7a-0001 ID=EsuBft1192_7a-0001|Name=EsuBft1192_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3570bp|location=Sequence derived from alignment at Scaffold_82:152591..156160- (Ectocarpus subulatus male Bft15b)
GTAGGGGTCGTAAGGGTTCCGCAGTACGGCGCCATGAAGTTCACCGCGCA
GTCCGCAGCGCTGCTCACGGTGCTCGTGGCGGAGTTGCCGGAGGCTGGCG
CTCCACCCGCTGGTACGACGGACGCTGCGCCCTTCCTTGCCGCCTCGTAC
ACGTTTGTGAACAAGTCCAGCGGCAGAGCCGCCTGACGAACAAAAAGAAG
GGGGGGGAAAGCGTATCATTAGTTCAAAACTGTCGATCCTCGATGGAGAA
CTCCCGACACACGCAGAGGGCAACGCATTACGCGTGCGCAGAACGTCGGG
GAACAGCGAGCGAGAGAGAGAGAGAGAGAGGGANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTTTATCTTTTTCTGGCG
TTGTTTACCTTCCCGACAGCAGTCAAGTTTCGTTCCATGATCAGTTTTGC
TCCTTCCCTGTTTGGCAGGTAGCCTAAAGGCAGAGAGGGTGAATGGTACC
AGAGATGCAACGACGGTTCCGTGGGGACAACGCCAAAACAGCATCAGCAC
CAAGCTGTTGCAGTTTAGTACCTCGTCCTGCAGCACGACACCCACCGCTG
TTGAGGAGTGCTACGATGTGAAGGTTCACCAGCGAACGGCCGTGGTTAAT
TGGCGTACGCTGACCTTTCAACCACCAGACACACCACGTTTGTAATCGTC
AGGTTTAGGGTGTTTCCCTGCTGCAATTGCGTATTTTTTTTCCGACTTCA
TTTCTACGCCTCCGTTTACCCCGGGGAGATTGAGTTGTTTTGCCTGGAAT
CTTCGGTACATACTTTACACCAGAGTGTTCTTAGGCGGATGAAATGTTTC
TACGCATTTATTGATGGTCGTGTTCTTTTTTCTCTGGTGGGACAGCGTTT
CTTCTCGCACTTTCTTCTGCATGGTACTCAATTACTCGTTGCGTGGTGCG
CGTGATGACCGCTCAAAAATCTCTGGGACTTGCTCTTTTTCAGGGGCCTG
CAAATCCGAACAAAAAAACAGTCAGATTTTAGTGCATGAAAACTAACAGG
AACAACTTTCTAGCGGGGGTGTATTCCTCTTTGATTCATCATGCGGAACA
CACAAAAGTCCCACAGACCATGGGCAACACGAACACACAAGAGAGAGCGA
TCAAGCGCAGCGGAGTACAGCAGTAGGGCCTGCAGCAAAAACGCGACAAA
TAATACATTATGCAACAGAGCACACGCTCACGCACGCGCGAAAAGTCAGA
GCGACAACACAAACAAAAACGCACATGGATGCAAAAATCCAGCCCAATTA
TTCAGGTTGTACGCGAAACCGGCACTTCCTACCAAACGTCCTGACATTGA
TTGACCATGCCCTCTTGTGTCGCCCCCGGGAGGCAAACTCCCGAAGCACG
ACGTTTCTTCACGGAAACAACAAATGTCACCCAAACAACAACATCCCGCA
GATATTGTACCATTGCGTTTCCCTATAGACTCACCAACAGCACGCCTCGA
TTCACAAGGATTTTTTGCGCGATCTCCAGGACATCGATACCGGACGTGGC
GAACGTAATCATATCCACCACATAAGTGATGAAATTCTCGTGTACGTTCT
GTCACCGAAATATAACGCGGGAGGACGGGCACGGGCGCGATTTAGAGACT
GAACTACAACTAGAGTAAAATATATTTTCTGCAGATAGGGATGGATCTCT
TGTTGTGTCACACTAAATAACTACCTTCTTTCATAATAACACAACGATCT
TTCAAGAAATCTGTTTGAATCGTTCATGTATAGGATATGAACGTATGTAT
GCACTTTTTTCAATTTCAAACGGTCGAGCGTTTGTTTCCCGCTCATTGTT
GAAAAGATTGTGGACATCGGTAACCTGGCGGGATGAGTTGAAGTAGTGCG
TATTAGACGGAATTGGTAAACGCGGCATACAGTAAGGTAGGGGAGCGACA
GCAATTCGTTTGTACCACATTGCAGTTCAGTCTTGTGTGTGGGGACTCAG
CGAGACGAATGGCGGTATCATCGGCATTATCATTTATCATCAACATCAGC
AAGAAGCAGGTTTCAAGGACTTCCCTGCTTTTCACCTATATACGAGTGTG
TGTAGTTTGAAGACACGCAAAAAACACTTGACGGTTGACGGCGCGTGCGA
ACAGACTCTGTATGTGGGTCAGCGGCTTAGCGGTCGATACAAGTTGGTGA
TGCACGCAACCCGATGCCGAGCACTAGGGAGGATGTCCCTTCTACACCTA
CCCCCTCTCTTTTTCTCTTCCCCTGTCTATCCGTATGCTCTCTCTCTCTC
TCTCTCTCCCTCTCTCTCTCCCACACATGCACGCACACACCCTCTCCCTC
TTTCAAACAACCACCCTGGTCGCTGTCTCACTCTCTCACTCTCTCACCTC
ATCATGTTCGGGTGTGGGGGTTTCACGCAGAAACCGCCTCGCGTCTTCAA
CGAAGTACTTGGTACTCAGTTGTGGACGGTGGCCCGGCTTGCCGACGTCC
TCCCGCTTTTTCTTCTTGCCCTTTCCACGCTGCTTCTTCTTCTTCTTCTT
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCCTCGT
CCTCCTCGTCCTCCTCCTCCTCCTCGTCGTCTCCGCTGGACACGGCAATC
GTTCGCCGCTTCTTCTCTTGTTGCTCCCGCCCCCTGTCGCTCTGAGATCC
CTTGCTGCTGCTGCCTTGGCTGAGGGATAAACTTGATCTCTTTTCTTGGC
CGTGGACTTCCTTTCCCCGCGTTCGGCTTCGGCTTCCTGGTTCGCTCTAA
CCTTCGGCGACGGGTTTCGAGGCCGCGGGTGGGGTCGACTCATTATTTTT
CTCGCCGCGTGGACGGCGGGGCGGGAGGGACGGGAGGAGGGCAGATGGTG
CTCGTGGCAGATGCGTATCGCCAATTCTTGACCAATTTAAGCAGGGGGTC
CGCAGATATACCCCATGTCAAAATATGTGGTACTAGAAATAAAGTAGGAA
ACCAACTGCGTACCTCGGCGGCCTTTGTTGGCCTTGGCCTTGTGCAAGCC
TCGCTTGCTTGGCCGGAAAGCCGAGGATCTCTCTTCCTCCCTGCCTGGCG
TGGTTCACGCCATTGCCTTCTTCCTCATGAGTACGACAAATTCTAGTGGG
AGGCGTTTGGGCAGAGGTTTTTGGTGCCAATCTTGCAATTTGAGATTTTC
CACTAAGCGCAACTTGGATCGACATCACCGGAAGAAGTCGTCGTGTCGGG
CAGCCAGCACGAGGAGCTTGGAAGAGGTGCCGCCCTGCTCCAAGCGTCGC
CGCAGGTCCGAAAGGGAGTCAGATGCAGGAGCTTCAAGTTACGACGCTGG
CAGCGAGGCGGACGACGATCATGGTTCTATCGATGATATGGACACCGGTG
CTCTTCCAGGCAACAACAACGCCGGCAGCAGCAGCGATGACCACGCCCGC
GGCGGCGGCGGCGGCAGTAGCAGCAGCAGCGACGACGACGATGACGGTGG
TGGCGGTAGAAGCAGCAGCA

Coding sequence (CDS) from alignment at Scaffold_82:152591..156160-

>EsuBft1192_7a-0001 ID=EsuBft1192_7a-0001|Name=EsuBft1192_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_82:152591..156160- (Ectocarpus subulatus male Bft15b)
ATGAAGTTCACCGCGCAGTCCGCAGCGCTGCTCACGGTGCTCGTGGCGGA
GTTGCCGGAGGCTGGCGCTCCACCCGCTGGTACGACGGACGCTGCGCCCT
TCCTTGCCGCCTCGTACACGTTTGTGAACAAGTCCAGCGGCAGAGCCGCC
TGA