EsuBft1192_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1192_5a-0001
Unique NameEsuBft1192_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_82contigScaffold_82:158678..162682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1192_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length297
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_5aEsuBft1192_5aEctocarpus subulatus male Bft15bgeneScaffold_82 158678..162682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_5a-0001EsuBft1192_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_82 158678..159337 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_5a-0001-exonagat-exon-21839Ectocarpus subulatus male Bft15bexonScaffold_82 158678..158684 +
EsuBft1192_5a-0001-exonagat-exon-21838Ectocarpus subulatus male Bft15bexonScaffold_82 158955..158968 +
EsuBft1192_5a-0001-exonEsuBft1192_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_82 159104..159480 +
EsuBft1192_5a-0001-exonagat-exon-21835Ectocarpus subulatus male Bft15bexonScaffold_82 159613..161758 +
EsuBft1192_5a-0001-exonagat-exon-21837Ectocarpus subulatus male Bft15bexonScaffold_82 162092..162488 +
EsuBft1192_5a-0001-exonagat-exon-21836Ectocarpus subulatus male Bft15bexonScaffold_82 162646..162682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_5a-0001-cdsEsuBft1192_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_82 158678..158684 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_5a-0001-exonagat-three_prime_utr-1838Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 159338..159480 +
EsuBft1192_5a-0001-exonagat-three_prime_utr-1839Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 159613..161758 +
EsuBft1192_5a-0001-exonagat-three_prime_utr-1840Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 162092..162488 +
EsuBft1192_5a-0001-exonagat-three_prime_utr-1841Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 162646..162682 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1192_5a-0001 ID=EsuBft1192_5a-0001|Name=EsuBft1192_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2978bp|location=Sequence derived from alignment at Scaffold_82:158678..162682+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGAATCTGAACCGGTGGTCGAGTTGGGGCCGACGCCTAACGGGCC
CCCTGCAAAGGCGGGCTGCAAAACCCAGGGAGACCTCACGGACGAGCTCT
TCAGCTACACGCGCCAGAAGCACTCGGCCTTCATACCCAAGAAAAACAAG
GTTGCGGTCCGCAAGGAATACTCGGCACCAGAAATATTCGGCGTGTCCGA
CACCACCCTCCAGAACAAGGCAAGACACTCATGTTGTAGCGCTAGACCTC
ACTAAGCGGACGCTCATTGATGACGTTTCTCACGTCACCGGCCGTTCATG
GGTTTACGAGCAAAACCACTTTTCGCACTCGACGAGTCCAGGTTGTTTTT
TGGAGTGTATTATGAAAAAATGACGAACACATTCGCAAGGGCGGATAGGT
GGGCCTTCGGCTTCGACTCCCATGATGCCCTTGGGACGTGATGAATGTAT
ACATGGGAAGGTGCAAACCACATCCGGTACAGGTATTCAACAGCTGCATA
CATTAGTGCTATTTTCATTTCGCAAAAGGAACACGAAGCGCTGTTCGTTC
TCAAGTGGTCATCGCTGATCTTTGTTTTCCACCGGAACAGCAGTAAAATA
CTTCGTTCGCATATGCGTAGAAGTTGGTCGATTCTCTCTCTCTCGCTTTT
TCTCTCCTCTGTGTGTGTGTGGTGATGTGCGTGGCTGGCTTAATCTTTTT
GCGACCGCCCGTTGGGTCTCTTTAGATTATCGTGTGCCAAAAGCCGGAAA
TTGCAAATTCACTTGAGTTTGTATGGATTAATTAAATTTGAGCCATCCCT
GCATGACGTCAACAACGGCTGAACCTGCATGACGTCTATCGTCTCCTAAA
AACCGAAAATTGCTTAATATTTGAGATTGTTTGAATAAACTAAATTGCCA
GAGCAGTGGCAAAGTGTGAGAGGATTCGTAGAAGGAACTGTTCCTCCGCA
CACGATTTCGCTCGTACAGAAGCCGGGCTGCACTGACTGACACCTGGCAC
CAGGGCTATTCGTTGTTTTCTGCTGTTGAGAAGGGAGTTTTTCACCACAA
GTTCTAACGAAGAGTGGGCCGCGCGTGGGCTAGGTGACAGACTTCTGTCG
TACCCTTACCCCGCTTGAGTTCGACTCCCCCAGCTTTGGCGATTTTTGCA
CATGGCCAAAGGGCGTCGACCGCAAGGCGCTTGCGCCTGAAACAATTGAT
CTTGCCTCCATACACATCGTCTCCCCAAAACCAACAAACCAAAATCATTC
CCCAAACCAAAAACAGGTAATTAAATAACTAACACCCCCCCCATATAGAC
TTGGTTGCGGTCGGCTTGTCATTAAGCGCGATGAAAATAGCACCCACCAG
AAGCACTCACTGCTTGTGTGTTTCGTTCCACTTTTTTTCATGTTTCCCCG
AAACCAGGCGATCATCCCCTTGGCCACGTTTGTCATCGAGGAGATGTGTG
GGGATCTTACCAACGAGCGCAACGAGCTGATCCTAGACAGCCAAGGATCC
GCGCAGGGCTTGGACATCAACAGCCAAGGATCCGCGCAGGAGGAGTCGAC
GAGCTTCGACGCGTTCGGTCGCGCGAGAGCCTGGATCAGCGATCGTACGA
CGCCCGCATCGGGTGGCGGAGGCGACAATGATAGAAAGTTCAATGAAAAG
TGAGTTTCCGGTACTGCAGCACGTGTAGCGGGCTTGTGATTTGGGGCGGT
GATGAGACTTGTTTCCTGGAGGCGACAATGATAGAAAGTTCAATGAAAAG
TGAGTTTCCGGTACTGCAGCACGTGTAGCGGGCTTGTGATTTGGGGCGGT
GATGAGACTTGTTTCCCGAGTGCTGCCTCGACACCAGTAGACTTGTACGC
TGATTGGGTTTGTGAAGATATTGTGTAGACACGCAAAAAAAAAATATCGT
TTTCATTATTAGCAACGACCGCGCTAGCCGTGTGTGCCGTGTGTGTGTAG
TTCGGTCGTGTTCAAGACAGCACGACGGGAAGAGAAGTTATGCTTGTAGA
GGCATGTCAAACCTAACAGCAAAGAGCACTGAGATATGTGTGCGGGGGGA
GACAAGCTCTTTCCTACGTCTATCTGTTGTTGGGCCGCGCCCGGATGGTA
TTTGTTTTAGTTTTTAATGTCCCTATTCCCACCGGGTTTGTCGTGTTTTG
TTTTGCTGACGGCAACACCTTTTTTGCCTTGTTGGCAGAAGAAGTTCTGC
TCGAGACTCACGTACTGATTCGCCTCTGCTGCAGTCTGCTGTCGAGCGAC
GAGTCTCACCCCGCATGCATCCCGTCCTGAACTTGTGTGTCATGCCCACA
GGTTGTTCAAGAATATGGCGATTGTGTGGAACCACAAGCTGGCCAGGGCC
AAGACGACGACCGTAGACTCCGCCGAAGCTGCCAACGCGCTTCTTCGACC
CTATACGCGAAGAAGTTTAGAATGTGAAGAAGTGTAGAATGTCGGAGAGT
TTTTTGGCGTGGACGGACGAGGGGCTACATTTCGCCTGCGTTGTTTGTGG
CAACATCTGACTGCAGGCAGAGGCTAGAAGTCGACACAGTGTGGGACTGC
GACCACAGTTGTATTTTTGTATTTTGCTTCGTACATTACTCAACGAGCTG
GTTGCTTTTTCCGGTGCTTGGGCACTCTTTTATAGCGATGGTTATCTAGA
AAACCTAGTCTGTGCGGCTCCTTCGCGTCGCCTTTTCTTTAATCGCCGAG
TGGCGCTTCGTTGGTGCGGTGGAGTGTAGAATTCCGAGACTGTTTCGTGA
GTGGTACATGAGATTCGTACAAGTCGCCGCCACCGCGTCTTTCGTGTGCT
TTTCTTGTGGGCACCGCAGTCGTCCTCAGGGATTCACCTGTTTGCCCTGA
TTCCGTGACCTTGACCAAACTGCTGTGTGCAACCGTTCTTTGTGGGTTCG
TTGTGGAGGATGGCTCAGGAAGCAGAGAATGAGTCAGCGTCGTCCCTCTT
GGTTCGTTCGACAGTATAGTATAGTATG
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protein sequence of EsuBft1192_5a-0001

>EsuBft1192_5 ID=EsuBft1192_5|Name=EsuBft1192_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=84bp
MRESEPVVELGPTPNGPPAKAGCKTQGDLTDELFSYTRQKHSAFIPKKNK
VAVRKEYSAPEIFGVSDTTLQNKARHSCCSARPH
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mRNA from alignment at Scaffold_82:158678..162682+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1192_5a-0001 ID=EsuBft1192_5a-0001|Name=EsuBft1192_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4005bp|location=Sequence derived from alignment at Scaffold_82:158678..162682+ (Ectocarpus subulatus male Bft15b)
ATGCGAGGTCTATGGTCTAACGACTACGGCATGCCCGACTGCGATTGATT
GCTTTCCGCGACAAGTTGCGTTTTTTTGTGTTGTGCCAGCGAGGCCTGAC
CCTCCTTTTTGTGTTACATTGCCCCTTCTTCAAAATACGCTATTAAACTT
TTACAAACGTTGGCGCTCCGAGCTTCCTTGTTTGTTCCCGTTCACTCTCG
ATAGGTATCACGTCAGATGTGAGCACCTAATGGTTGTGCCATGGCTCTTT
CATGATGCCTGTGGGTATGATTGTCAGAATCTGAACCGGTGGTTCGCCCC
GTGTTTGAAAATGCATGTGCGGAAGAGCCTATGCAGCCACTGGTCTCCAG
GCAACTACGTTGTGTCAAAAACGTGCTTTTGTGAAGACTCGACACCTTGC
TTTGCGTTCACGTGCTCACTGTACAGGTCGAGTTGGGGCCGACGCCTAAC
GGGCCCCCTGCAAAGGCGGGCTGCAAAACCCAGGGAGACCTCACGGACGA
GCTCTTCAGCTACACGCGCCAGAAGCACTCGGCCTTCATACCCAAGAAAA
ACAAGGTTGCGGTCCGCAAGGAATACTCGGCACCAGAAATATTCGGCGTG
TCCGACACCACCCTCCAGAACAAGGCAAGACACTCATGTTGTAGCGCTAG
ACCTCACTAAGCGGACGCTCATTGATGACGTTTCTCACGTCACCGGCCGT
TCATGGGTTTACGAGCAAAACCACTTTTCGCACTCGACGAGTCCAGGTTG
TTTTTTGGAGTGTATTATGAAAAAATGACGAACACATTCGCAAGGGCGGA
TAGGTGGGCCTTCGGCTTCGACTCCCATGATGCCCTTGGGACGTGATGAA
TGTATACATGGGAAGGTGCAAACCACATCCGGTACAGGTATTCAACAGCT
TAAAAAATGACGAACACATTCGCAAGGGCGGATAGGTGGGCCTTCGGCTT
CGACTCCCATGATGCCCTTGGGACGTGATGAATGTATACATGGGAAGGTG
CAAACCACATCCGGTACAGGTATTCAACAGCTGCATACATTAGTGCTATT
TTCATTTCGCAAAAGGAACACGAAGCGCTGTTCGTTCTCAAGTGGTCATC
GCTGATCTTTGTTTTCCACCGGAACAGCAGTAAAATACTTCGTTCGCATA
TGCGTAGAAGTTGGTCGATTCTCTCTCTCTCGCTTTTTCTCTCCTCTGTG
TGTGTGTGGTGATGTGCGTGGCTGGCTTAATCTTTTTGCGACCGCCCGTT
GGGTCTCTTTAGATTATCGTGTGCCAAAAGCCGGAAATTGCAAATTCACT
TGAGTTTGTATGGATTAATTAAATTTGAGCCATCCCTGCATGACGTCAAC
AACGGCTGAACCTGCATGACGTCTATCGTCTCCTAAAAACCGAAAATTGC
TTAATATTTGAGATTGTTTGAATAAACTAAATTGCCAGAGCAGTGGCAAA
GTGTGAGAGGATTCGTAGAAGGAACTGTTCCTCCGCACACGATTTCGCTC
GTACAGAAGCCGGGCTGCACTGACTGACACCTGGCACCAGGGCTATTCGT
TGTTTTCTGCTGTTGAGAAGGGAGTTTTTCACCACAAGTTCTAACGAAGA
GTGGGCCGCGCGTGGGCTAGGTGACAGACTTCTGTCGTACCCTTACCCCG
CTTGAGTTCGACTCCCCCAGCTTTGGCGATTTTTGCACATGGCCAAAGGG
CGTCGACCGCAAGGCGCTTGCGCCTGAAACAATTGATCTTGCCTCCATAC
ACATCGTCTCCCCAAAACCAACAAACCAAAATCATTCCCCAAACCAAAAA
CAGGTAATTAAATAACTAACACCCCCCCCATATAGACTTGGTTGCGGTCG
GCTTGTCATTAAGCGCGATGAAAATAGCACCCACCAGAAGCACTCACTGC
TTGTGTGTTTCGTTCCACTTTTTTTCATGTTTCCCCGAAACCAGGCGATC
ATCCCCTTGGCCACGTTTGTCATCGAGGAGATGTGTGGGGATCTTACCAA
CGAGCGCAACGAGCTGATCCTAGACAGCCAAGGATCCGCGCAGGGCTTGG
ACATCAACAGCCAAGGATCCGCGCAGGAGGAGTCGACGAGCTTCGACGCG
TTCGGTCGCGCGAGAGCCTGGATCAGCGATCGTACGACGCCCGCATCGGG
TGGCGGAGGCGACAATGATAGAAAGTTCAATGAAAAGTGAGTTTCCGGTA
CTGCAGCACGTGTAGCGGGCTTGTGATTTGGGGCGGTGATGAGACTTGTT
TCCTGGAGGCGACAATGATAGAAAGTTCAATGAAAAGTGAGTTTCCGGTA
CTGCAGCACGTGTAGCGGGCTTGTGATTTGGGGCGGTGATGAGACTTGTT
TCCCGAGTGCTGCCTCGACACCAGTAGACTTGTACGCTGATTGGGTTTGT
GAAGATATTGTGTAGACACGCAAAAAAAAAATATCGTTTTCATTATTAGC
AACGACCGCGCTAGCCGTGTGTGCCGTGTGTGTGTAGTTCGGTCGTGTTC
AAGACAGCACGACGGGAAGAGAAGTTATGCTTGTAGAGGCATGTCAAACC
TAACAGCAAAGAGCACTGAGATATGTGTGCGGGGGGAGACAAGCTCTTTC
CTACGTCTATCTGTTGTTGGGCCGCGCCCGGATGGTATTTGTTTTAGTTT
TTAATGTCCCTATTCCCACCGGGTTTGTCGTGTTTTGTTTTGCTGACGGC
AACACCTTTTTTGCCTTGTTGGCAGAAGAAGTTCTGCTCGAGACTCACGT
ACTGATTCGCCTCTGCTGCAGTCTGCTGTCGAGCGACGAGTCTCACCCCG
CATGCATCCCGTCCTGAACTTGTGTGTCATGCCCACAGGTTGTTCAAGAA
TATGGCGATTGTGTGGAACCACAAGCTGGCCAGGGCCAAGACGACGACCG
TAGACTCCGCCGAAGCTGCCAACGCGCTTCTTCGACCCTATACGCGAAGA
AGTTTAGAATGTGAAGAAGTGTAGAATGTCGGAGAGTTTTTTGGCGTGGA
CGGACGAGGGGCTACATTTCGCCTGCGTTGTTTGTGGCAACATCTGACTG
CAGGCAGAGGCTAGAAGTCGACACAGTGTGGGTACGTTTTTGGGCTCTTC
CACGCGCCGAGCGCTGGTTGGTTGGTGTCTGCTTTTATCGCGTTGTTTTG
TATGCCAATGACAACGTTTTATTTCGGCCGAACAAGCTGATTGTGTCGTG
AAGATTTGTCAGAAAGCGTCGGCGGCGGTGACCGGTCTCTGTATATTTTT
CGTGGGCGCAACTCGTACACCCCATGTTTTGTGCATGGGTCATTGTTTGT
GGAGCGTCGCTGCTTATGCGAGGTGTTTCTTTGCACGACAACCGCGTGAG
TGATTGCTTGCGCAAAACGTCTGGTGGCTTCGTGTGTGCCACAAAACGTA
GTGCTGGTGTGTAGGACTGCGACCACAGTTGTATTTTTGTATTTTGCTTC
GTACATTACTCAACGAGCTGGTTGCTTTTTCCGGTGCTTGGGCACTCTTT
TATAGCGATGGTTATCTAGAAAACCTAGTCTGTGCGGCTCCTTCGCGTCG
CCTTTTCTTTAATCGCCGAGTGGCGCTTCGTTGGTGCGGTGGAGTGTAGA
ATTCCGAGACTGTTTCGTGAGTGGTACATGAGATTCGTACAAGTCGCCGC
CACCGCGTCTTTCGTGTGCTTTTCTTGTGGGCACCGCAGTCGTCCTCAGG
GATTCACCTGTTTGCCCTGATTCCGTGACCTTGACCAAACTGCTGTGTGC
AACCGTTCTTTGTGGGTTCGTTGTGGAGGATGGCTCAGGAAGCAGAGAAT
GAGTCAGCGTCGTCATACATGTGCTTTTTAGGGGAGTTGATCGCCCGTCG
AGATTTTGGAGTGTTTCGTTGACCGATTGAGTTGGTTTGGGTTGGCGCTC
TTCTTGTGTAGTCGTGTCGATGGACGAGCGAACAAGTGTGTATGTAGTTG
AAGCGGTGCTCGTGTCAGGTCCCTCTTGGTTCGTTCGACAGTATAGTATA
GTATG
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Coding sequence (CDS) from alignment at Scaffold_82:158678..162682+

>EsuBft1192_5a-0001 ID=EsuBft1192_5a-0001|Name=EsuBft1192_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=255bp|location=Sequence derived from alignment at Scaffold_82:158678..162682+ (Ectocarpus subulatus male Bft15b)
ATGCGAGAATCTGAACCGGTGGTCGAGTTGGGGCCGACGCCTAACGGGCC
CCCTGCAAAGGCGGGCTGCAAAACCCAGGGAGACCTCACGGACGAGCTCT
TCAGCTACACGCGCCAGAAGCACTCGGCCTTCATACCCAAGAAAAACAAG
GTTGCGGTCCGCAAGGAATACTCGGCACCAGAAATATTCGGCGTGTCCGA
CACCACCCTCCAGAACAAGGCAAGACACTCATGTTGTAGCGCTAGACCTC
ACTAA
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