EsuBft1192_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1192_4a-0001
Unique NameEsuBft1192_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_82contigScaffold_82:169627..172895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1192_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length66
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005190.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_4aEsuBft1192_4aEctocarpus subulatus male Bft15bgeneScaffold_82 169627..172895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_4a-0001EsuBft1192_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_82 169627..172815 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_4a-0001-exonagat-exon-21833Ectocarpus subulatus male Bft15bexonScaffold_82 169627..169894 -
EsuBft1192_4a-0001-exonEsuBft1192_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_82 171198..171263 -
EsuBft1192_4a-0001-exonagat-exon-21834Ectocarpus subulatus male Bft15bexonScaffold_82 171596..171727 -
EsuBft1192_4a-0001-exonagat-exon-21832Ectocarpus subulatus male Bft15bexonScaffold_82 172694..172895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_4a-0001-cdsEsuBft1192_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_82 169627..169894 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_4a-0001-exonagat-five_prime_utr-1224Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_82 172816..172895 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1192_4a-0001 ID=EsuBft1192_4a-0001|Name=EsuBft1192_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=668bp|location=Sequence derived from alignment at Scaffold_82:169627..172895- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAGAGAAGAGCAGCAGCCTACAGTCGCAGGAGCTCTCTCTCTCCT
TGGCTCACGCGCACTCACTCCACCACCACGATGGCGTCCGAGGAAACTCC
TGCTGCGGGCATTTCCTCGCTGTTCGCGAAGAAAAAGGGAAAGAAGGGCA
AGAAAACCAAGGGGTCCAATCTCAACCTCGACTCGGGCATCCCCAAAACC
GAGGAGAAGCCCAAGATAGAGAAGCTTCAGGAGATCCTGGGTGGCCCTGA
CCCGGCGGAAGACGACGGCTGGGACGATGTCGTAGAGAAGAAGAGCGTCG
TGGCGACGGGAGGGAAGCACGTGTCGGACCTCATTGACATGACGGCTCTC
ATGACCGAGGATGAGTCGACGGCCGCCAAGCTAGAGAAACAAGACATCAA
GCAAGCTTTCCACGATGCAAGAACTGTGAAAGAGACGGAGAAGAAGGAAG
AACCGCAACATGAGGAAGCGAAAGAGGAGGAGACTGCCACTAAGCCCAAG
GGGCTGTCCGGCGACATTTTCGGGGGTGGGGCGGCGCGCAGCGCCGGTGG
GCTCGGGGGGGGTTGGAAGCAGCGCATGGAGGAGCGCGAGTTGAAGCAGC
GCATGGAGGCGCTCAGCGTGAACAACACCTCTGCCTTCCCGTCTCTCAAG
GACGCCATGAGCGCGTGA
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protein sequence of EsuBft1192_4a-0001

>EsuBft1192_4 ID=EsuBft1192_4|Name=EsuBft1192_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=195bp
MASEETPAAGISSLFAKKKGKKGKKTKGSNLNLDSGIPKTEEKPKIEKLQ
EILGGPDPAEDDGWDDVVEKKSVVATGGKHVSDLIDMTALMTEDESTAAK
LEKQDIKQAFHDARTVKETEKKEEPQHEEAKEEETATKPKGLSGDIFGGG
AARSAGGLGGGWKQRMEERELKQRMEALSVNNTSAFPSLKDAMSA
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mRNA from alignment at Scaffold_82:169627..172895-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1192_4a-0001 ID=EsuBft1192_4a-0001|Name=EsuBft1192_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3269bp|location=Sequence derived from alignment at Scaffold_82:169627..172895- (Ectocarpus subulatus male Bft15b)
ATGTGCAGAGAAGAGCAGCAGCCTACAGTCGCAGGAGCTCTCTCTCTCCT
TGGCTCACGCGCACTCACTCCACCACCACGATGGCGTCCGAGGAAACTCC
TGCTGCGGGCATTTCCTCGCTGTTCGCGAAGAAAAAGGGAAAGAAGGGCA
AGAAAACCAAGGGGTCCAATCTCAACCTCGACTCGGGCATCCCCAAAACC
GAGTGAGCCTTACACGCATACTTGTGCGCGTCCTTGCATTCCAGTAGAGT
AGCGTTGAGAGTAGTGGAGATGCGTAGAATGAAACGCGTTTGTGTGAGTT
GACGAAGCCTTTGGTCTTCATTCCAATGGATGGCTCTTAGCCGCTCTGTT
GTGGGTTGAACATTCTCGCAAGTTGCTGTTCACCTCGCACCGCTACCGCA
GAAATCCAGTGAGCACGGGATGCGAGGTGGGGCCTTCTGCTGTGTCTCTC
TCCGTGCAATCTGCACACAACTCCTCCTACCAGTGCCGAGGTACTTTCGG
TTCAACCGCTCGCAGAAGTTCGTCTGCCGTCCTTTCATCCACAGCAGTAT
TTAAACCAAACGTATGCATACGCATCTGCTGTGTAGGATGGATCCAGTTC
TAGGAGTTCCGTCAAGGCAAGTCACACAAACCGAGAGTAAAAACGAGCGT
AGAGACATGGTGCGTGAAAAGTGCGTACAACAGCCTGCACTTCCCGCCCG
CTCCTGCCAACGCGTAGAACGTAGCAGGGTTTTTGCTTGCATATTCAGAG
CTTGCAATCAGGGTGCTGCGGGTTGGCTAGCTTGCAATCGCCACTCGCCT
GTGAAAATTGCGGTGTGACAACGCGAATCTTGGCTTTAGTAGATCACTGC
TGTAGCATAGATACGTGCTGCCAGGAGGTTTGCAACTTCGCGCTCAAACA
CGCGATGTACTCCGAACCCCACACAAACAGCCTCTGAATTAATTCGCCAA
ATACGTCAGCCTGATGGCAGCAGTCAAAGGCTTTCTACGCCTGGGTGCCA
CTTGCATAAGAAAGGCTCGGCAGGCAGTCACCGTCTGTGCGGCCATCAGA
AAGAGCGCACCCCCCCTTATAGATTTGCTGACCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNC
GCACGAAACGTTTGTCAGGGAGAAGCCCAAGATAGAGAAGCTTCAGGAGA
TCCTGGGTGGCCCTGACCCGGCGGAAGACGACGGCTGGGACGATGTCGTA
GAGAAGAAGAGCGTCGTGGCGACGGGAGGGAAGCACGTGTCGGACCTCAT
GTGAGTCTTGTAGAGTTGATGCATGCGACGCGTTTTTTTTTTGTGATTTT
TGGGTTACATCGTCGTTTGACAGTTATGAAGATAATGAAATGCCTCCCCC
CCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
CCCCTCTCCGCACTTTGAAAAGGCGTATTCGTGTGTAGTGCACATCTCTT
TGCTTGCTGGTGCGCGTCGCTCACTCTGCCTGCCCCTTTTGGTGGCCGTT
TCTCCCTCTCCCGTCTGTGGAATTAATCATGGGGCGGATTTGGATGCTTT
GCCTACACGCCAAACCGGCGCGCGGTCATCAGTGACATGACGGCTCTCAT
GACCGAGGATGAGTCGACGGCCGCCAAGCTAGAGAAACAAGACATCAAGT
GAGTCGATTGAACGAAAAAATTCTGACCACCACGTGCGCGCACGTGCATG
CGAATCCGCATAGGCGAGATGTACGTTGCGAGCGAAGATAGCAGGAAAAA
ACAGGCAAAGCGATCAAGGAGGCCCATAGTCCCAAGGTTGTATATCGTTC
ATCGATACCTTTTGTCGCGGATCTCGCCTGAAAAGGGTGGGCAGCGGCGA
CTATGCTCGAGGAGGAGAAAGAAAGACGAAATGGAGAACCTCCAGCCTGA
GGTTCCAAAGCCCAGACTCAATCTGTAGAAGCAAAGACATGAAGTGGACG
TCAAGCAGTCCGTATTCTCGAGGAAAGTTACGTGTACACGTGGCTACCTG
CGCGACGTCGCGAGACAGCAATGTGCCACAGCCGCGGCCCTGATTCAGTC
GCATTTTCATGGTGTGGGTCGGTCGACAGGCGCCATGATACCGGAGAGTG
CTGCTGTCCCCTTTGCGTGCATTGTGCGGTACGCTTGAGGCACGTTTGAT
ACAAATCACGATGTAAAATCTATTCCGTTTTGGATGTTTCCTCGTCCCGT
TAGCGAGACACCCACGGGCATTTTGTCCGTTCATTGTCGCAACATATAAA
GTTCCTCTTCATCGCACTCGCTCTGATTCCCGCCGCGAAATGGCATCGCG
CACAGGCTCGTGTACGTAGGATAGCTCAGAATCATCATTGTGTCGACGGT
GTTCGATGAGACGAGCGCCGTTGTGTAGCATCTTGTTTGCTGCTCCTCTC
CGCTCAACACTGCTACGAACTGCCACTCCCCCGTATTGCAATACAGTAGC
GAGAAAGAGTTATTCGATACCTGTACCCATCGCTCCGTTTGTTTGCCTTG
ACTGGACCCATCAAAACTAGTTAGCACCCCAGGAGTGTAGAAATTGGGAC
AGACCAATGTAAGAGTTTTTACTTGCAATTCAGCCGATCTTTCTTTTCCA
CTTCCCCGTAACCGCCCCCGCCCCCCCATTTACTGAGCTGAGAAAAATGA
AAAGGGAGGTACAGGGAGATGTTTGAGGTACAGAATAGAGAGAAGACGGT
AGCTGTACTGGGGAATAGGACGTGGTTTGAAAAGGCAGGAAGTGATATCG
GTAGAAGAAATACCGTAAGGATAGACAGATTAGGGACGACATTTTTGACT
CACCTTGGCCAAGTAGGAAGGAACGATTGGCCATCGGTGATCGTTCCTGT
GGGAACAATGCGCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAGCCGC
TATGGCTTGCAAAACATAGGAGTAAGCGCCCCCCCCCCCCCCCNCCAAAA
GGCAAGCTTTCCACGATGCAAGAACTGTGAAAGAGACGGAGAAGAAGGAA
GAACCGCAACATGAGGAAGCGAAAGAGGAGGAGACTGCCACTAAGCCCAA
GGGGCTGTCCGGCGACATTTTCGGGGGTGGGGCGGCGCGCAGCGCCGGTG
GGCTCGGGGGGGGTTGGAAGCAGCGCATGGAGGAGCGCGAGTTGAAGCAG
CGCATGGAGGCGCTCAGCGTGAACAACACCTCTGCCTTCCCGTCTCTCAA
GGACGCCATGAGCGCGTGA
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Coding sequence (CDS) from alignment at Scaffold_82:169627..172895-

>EsuBft1192_4a-0001 ID=EsuBft1192_4a-0001|Name=EsuBft1192_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=588bp|location=Sequence derived from alignment at Scaffold_82:169627..172895- (Ectocarpus subulatus male Bft15b)
ATGGCGTCCGAGGAAACTCCTGCTGCGGGCATTTCCTCGCTGTTCGCGAA
GAAAAAGGGAAAGAAGGGCAAGAAAACCAAGGGGTCCAATCTCAACCTCG
ACTCGGGCATCCCCAAAACCGAGGAGAAGCCCAAGATAGAGAAGCTTCAG
GAGATCCTGGGTGGCCCTGACCCGGCGGAAGACGACGGCTGGGACGATGT
CGTAGAGAAGAAGAGCGTCGTGGCGACGGGAGGGAAGCACGTGTCGGACC
TCATTGACATGACGGCTCTCATGACCGAGGATGAGTCGACGGCCGCCAAG
CTAGAGAAACAAGACATCAAGCAAGCTTTCCACGATGCAAGAACTGTGAA
AGAGACGGAGAAGAAGGAAGAACCGCAACATGAGGAAGCGAAAGAGGAGG
AGACTGCCACTAAGCCCAAGGGGCTGTCCGGCGACATTTTCGGGGGTGGG
GCGGCGCGCAGCGCCGGTGGGCTCGGGGGGGGTTGGAAGCAGCGCATGGA
GGAGCGCGAGTTGAAGCAGCGCATGGAGGCGCTCAGCGTGAACAACACCT
CTGCCTTCCCGTCTCTCAAGGACGCCATGAGCGCGTGA
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