EsuBft1192_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1192_15a-0001
Unique NameEsuBft1192_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_82contigScaffold_82:27035..27920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog161934.XP_010672225.1
ProteomeIdEsuBft1192_15
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl35493|Streptophyta
Length88
Hectar predicted targeting categoryother localisation
Evalue1.01e-07
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_15aEsuBft1192_15aEctocarpus subulatus male Bft15bgeneScaffold_82 27035..27920 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_15a-0001-exonEsuBft1192_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_82 27035..27920 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_15a-0001-exonagat-three_prime_utr-1835Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 27035..27373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_15a-0001-cdsEsuBft1192_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_82 27374..27643 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_15a-0001-exonagat-five_prime_utr-1222Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_82 27644..27920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_15a-0001EsuBft1192_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_82 27374..27643 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1192_15a-0001 ID=EsuBft1192_15a-0001|Name=EsuBft1192_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=886bp|location=Sequence derived from alignment at Scaffold_82:27035..27920- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCAAAACGTGTGTCCCACCCCAGCAGAAGTTGCTCGACATCACCACCCC
AACTTTGGACCTCCGCCCAATAGCCTTCCCATCTGCCGGTGAGGGATGTC
TGCAGCTGGGAGAGTGCCTCCCAGGTGGCAAAACGCAAGAATTTGAACAA
AGAGGGAAGAGAGGAGGTGATTCGGTACCTCCTCGCTGGCAGCACGAACG
GGGTTTTGCGGTATGGTGCGTTCAAGGAAGCCGGCGAGAAGTTCGGCTAC
TACTGGGAGACGATCAAGAGGCTGTGGATGAGGTACTATACGCAGCACAA
AGCGGGGGTCGCCAGTCCAAAGATAGAGAACCGGCGCATGGGAAATAGCG
GCCGGAAGGGCATTCCCCTCGAAGAACTCAGGGAGCGCCTGCGTGACATC
CCGCTGAACCGCACCACACAGCGCCGCTTGGCTGCGGCGCTTGGGATTCC
CAAAAGCACGCTGCACAGGAATCCCAAGGCGCTCGGGCTGAGGGCTCACT
CGAACGCGCTCAAGCCGTACCTGCAACCAGCCTCCCAACAGCCCTGACAC
CAACATCCTGGACCTGGGCTTCTTCGCGTCAAACCAGTCCCTGCAGGACC
GCTACAAGCCCAGAACTATCGACGACCTCGTCGGCGAGGTCGAGACCGCG
TGGGAGAAGGCGTCGCCGGACAAGCTTGGCAAGGTGTGGACTTCGCTCCA
GGCTTGCTTGGAGCGAACCTTGCTCTGCGGCGGGGACAACACCTACAAGG
TCCCTCATTTGAGCAACGACAAGGCTGCACGGGCGGGGACGCCCATCCCA
CTGCGGTACCAGATCTCCGAGGAGGCGTGGATCAAGGGCACATCGTCGCT
CGAGGCGGGAGAGGAACAAGGAGGAGCCGCGTAGAA
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protein sequence of EsuBft1192_15a-0001

>EsuBft1192_15 ID=EsuBft1192_15|Name=EsuBft1192_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=89bp
MRYYTQHKAGVASPKIENRRMGNSGRKGIPLEELRERLRDIPLNRTTQRR
LAAALGIPKSTLHRNPKALGLRAHSNALKPYLQPASQQP
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mRNA from alignment at Scaffold_82:27035..27920-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1192_15a-0001 ID=EsuBft1192_15a-0001|Name=EsuBft1192_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=886bp|location=Sequence derived from alignment at Scaffold_82:27035..27920- (Ectocarpus subulatus male Bft15b)
CCCAAAACGTGTGTCCCACCCCAGCAGAAGTTGCTCGACATCACCACCCC
AACTTTGGACCTCCGCCCAATAGCCTTCCCATCTGCCGGTGAGGGATGTC
TGCAGCTGGGAGAGTGCCTCCCAGGTGGCAAAACGCAAGAATTTGAACAA
AGAGGGAAGAGAGGAGGTGATTCGGTACCTCCTCGCTGGCAGCACGAACG
GGGTTTTGCGGTATGGTGCGTTCAAGGAAGCCGGCGAGAAGTTCGGCTAC
TACTGGGAGACGATCAAGAGGCTGTGGATGAGGTACTATACGCAGCACAA
AGCGGGGGTCGCCAGTCCAAAGATAGAGAACCGGCGCATGGGAAATAGCG
GCCGGAAGGGCATTCCCCTCGAAGAACTCAGGGAGCGCCTGCGTGACATC
CCGCTGAACCGCACCACACAGCGCCGCTTGGCTGCGGCGCTTGGGATTCC
CAAAAGCACGCTGCACAGGAATCCCAAGGCGCTCGGGCTGAGGGCTCACT
CGAACGCGCTCAAGCCGTACCTGCAACCAGCCTCCCAACAGCCCTGACAC
CAACATCCTGGACCTGGGCTTCTTCGCGTCAAACCAGTCCCTGCAGGACC
GCTACAAGCCCAGAACTATCGACGACCTCGTCGGCGAGGTCGAGACCGCG
TGGGAGAAGGCGTCGCCGGACAAGCTTGGCAAGGTGTGGACTTCGCTCCA
GGCTTGCTTGGAGCGAACCTTGCTCTGCGGCGGGGACAACACCTACAAGG
TCCCTCATTTGAGCAACGACAAGGCTGCACGGGCGGGGACGCCCATCCCA
CTGCGGTACCAGATCTCCGAGGAGGCGTGGATCAAGGGCACATCGTCGCT
CGAGGCGGGAGAGGAACAAGGAGGAGCCGCGTAGAA
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Coding sequence (CDS) from alignment at Scaffold_82:27035..27920-

>EsuBft1192_15a-0001 ID=EsuBft1192_15a-0001|Name=EsuBft1192_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=270bp|location=Sequence derived from alignment at Scaffold_82:27035..27920- (Ectocarpus subulatus male Bft15b)
ATGAGGTACTATACGCAGCACAAAGCGGGGGTCGCCAGTCCAAAGATAGA
GAACCGGCGCATGGGAAATAGCGGCCGGAAGGGCATTCCCCTCGAAGAAC
TCAGGGAGCGCCTGCGTGACATCCCGCTGAACCGCACCACACAGCGCCGC
TTGGCTGCGGCGCTTGGGATTCCCAAAAGCACGCTGCACAGGAATCCCAA
GGCGCTCGGGCTGAGGGCTCACTCGAACGCGCTCAAGCCGTACCTGCAAC
CAGCCTCCCAACAGCCCTGA
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