EsuBft1192_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1192_12a-0001
Unique NameEsuBft1192_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_82contigScaffold_82:56476..57162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog102107.XP_008223780.1
ProteomeIdEsuBft1192_12
Protein domainsIPR013103
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized mitochondrial protein g00820 os:arabidopsis thaliana gn: g00820 pe:4 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length687
Hectar predicted targeting categoryother localisation
Evalue2.16e-08
EggNOG OGsCOG2801@1|root,KOG1192@1|root,KOG0017@2759|Eukaryota,KOG1192@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontransferase activity, transferring hexosyl groups
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_12aEsuBft1192_12aEctocarpus subulatus male Bft15bgeneScaffold_82 56476..57162 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_12a-0001-exonEsuBft1192_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_82 56476..57162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_12a-0001-cdsEsuBft1192_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_82 56476..56745 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_12a-0001-exonagat-three_prime_utr-1832Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 56746..57162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_12a-0001EsuBft1192_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_82 56476..56745 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1192_12a-0001 ID=EsuBft1192_12a-0001|Name=EsuBft1192_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=687bp|location=Sequence derived from alignment at Scaffold_82:56476..57162+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTGCCGAGAGAGCTCATTCAGGATGTAGAGACAGAGCGTGGTAG
CTACCGAGAAGCCCGCCAGTCAAAGCATGCCGTAATTTGGGACAGACCCA
TGTCTGCAGGGTTTGAAGGCTTGTCAAGAGCAGGAACGTTCGCGTTGGCA
GTAAAGGCCCCGATAGGCTGTAACGTGATAGATGCTAGATGGGTCTACAA
ATGGAAAGCAGACGAAACAGGCAAGATAGTGAAGGCCAAGGCCAGGCTTC
TAGCGAAGGGCTTCAAGTAGAAGCATGGTGTGGATTATCTTGAGACTTTC
TCGCCTACTGCAAATGCTGCATCGATTCGTTTGCTGGTAGCATTGGCGTG
CAAGTTCAACTTGGAAATTTTCCACTTTGACATTGAGCAAGCGTTTGTTC
AGTCCGAATTGGATCATGAGGTGTTCATGAAGTTGCCTCCTGGCTGCGAG
ATCATGTCAGGAAAGGTCATCCGTTTAGACAAGAGTTTGTATGGACTGAG
GCAGGCATCTAGAACATTTCACAAGAGACTAGTGTCGGACCTGAAGACAA
AATGTTTTTGAGCAGTCTCTGTCTGACCCGTGTGTTCTCCGTTTCATAAT
GGGGGACGAGGTGATGGGTATGGTCGCGATTCATGTGGATGACATTCTGT
ATGCAGGATTTGAGAGGCTTGCGAAGATGGTTGTGGA
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protein sequence of EsuBft1192_12a-0001

>EsuBft1192_12 ID=EsuBft1192_12|Name=EsuBft1192_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=89bp
MELPRELIQDVETERGSYREARQSKHAVIWDRPMSAGFEGLSRAGTFALA
VKAPIGCNVIDARWVYKWKADETGKIVKAKARLLAKGFK
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mRNA from alignment at Scaffold_82:56476..57162+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1192_12a-0001 ID=EsuBft1192_12a-0001|Name=EsuBft1192_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=687bp|location=Sequence derived from alignment at Scaffold_82:56476..57162+ (Ectocarpus subulatus male Bft15b)
ATGGAACTGCCGAGAGAGCTCATTCAGGATGTAGAGACAGAGCGTGGTAG
CTACCGAGAAGCCCGCCAGTCAAAGCATGCCGTAATTTGGGACAGACCCA
TGTCTGCAGGGTTTGAAGGCTTGTCAAGAGCAGGAACGTTCGCGTTGGCA
GTAAAGGCCCCGATAGGCTGTAACGTGATAGATGCTAGATGGGTCTACAA
ATGGAAAGCAGACGAAACAGGCAAGATAGTGAAGGCCAAGGCCAGGCTTC
TAGCGAAGGGCTTCAAGTAGAAGCATGGTGTGGATTATCTTGAGACTTTC
TCGCCTACTGCAAATGCTGCATCGATTCGTTTGCTGGTAGCATTGGCGTG
CAAGTTCAACTTGGAAATTTTCCACTTTGACATTGAGCAAGCGTTTGTTC
AGTCCGAATTGGATCATGAGGTGTTCATGAAGTTGCCTCCTGGCTGCGAG
ATCATGTCAGGAAAGGTCATCCGTTTAGACAAGAGTTTGTATGGACTGAG
GCAGGCATCTAGAACATTTCACAAGAGACTAGTGTCGGACCTGAAGACAA
AATGTTTTTGAGCAGTCTCTGTCTGACCCGTGTGTTCTCCGTTTCATAAT
GGGGGACGAGGTGATGGGTATGGTCGCGATTCATGTGGATGACATTCTGT
ATGCAGGATTTGAGAGGCTTGCGAAGATGGTTGTGGA
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Coding sequence (CDS) from alignment at Scaffold_82:56476..57162+

>EsuBft1192_12a-0001 ID=EsuBft1192_12a-0001|Name=EsuBft1192_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=270bp|location=Sequence derived from alignment at Scaffold_82:56476..57162+ (Ectocarpus subulatus male Bft15b)
ATGGAACTGCCGAGAGAGCTCATTCAGGATGTAGAGACAGAGCGTGGTAG
CTACCGAGAAGCCCGCCAGTCAAAGCATGCCGTAATTTGGGACAGACCCA
TGTCTGCAGGGTTTGAAGGCTTGTCAAGAGCAGGAACGTTCGCGTTGGCA
GTAAAGGCCCCGATAGGCTGTAACGTGATAGATGCTAGATGGGTCTACAA
ATGGAAAGCAGACGAAACAGGCAAGATAGTGAAGGCCAAGGCCAGGCTTC
TAGCGAAGGGCTTCAAGTAG
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