EsuBft1192_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1192_10a-0001
Unique Name	EsuBft1192_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_82	contig	Scaffold_82:132484..136256 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1192_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	348
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1192_10a	EsuBft1192_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_82 132484..136256 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1192_10a-0001	EsuBft1192_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_82 136012..136173 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1192_10a-0001-exon	agat-exon-21850	Ectocarpus subulatus male Bft15b	exon	Scaffold_82 132484..135694 -
EsuBft1192_10a-0001-exon	EsuBft1192_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_82 135987..136256 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1192_10a-0001-exon	agat-three_prime_utr-1830	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_82 132484..135694 -
EsuBft1192_10a-0001-exon	agat-three_prime_utr-1831	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_82 135987..136011 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1192_10a-0001-cds	EsuBft1192_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_82 136012..136173 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1192_10a-0001-exon	agat-five_prime_utr-1218	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_82 136174..136256 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_82:132484..136256-
coding sequence from alignment at Scaffold_82:132484..136256-

spliced messenger RNA

>EsuBft1192_10a-0001 ID=EsuBft1192_10a-0001|Name=EsuBft1192_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3481bp|location=Sequence derived from alignment at Scaffold_82:132484..136256- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATATTGGACACCGGTGTCGTACTTCCTTATATACGACACCTACCATTTCT
TGGCCCCCAGAGCTCCAATCGGCGTACAACAAAATGCGCTGTGTAGCCAC
GGCCCGCAGCTATCAGCCCATACCATTTTGGGTCAAATCGGCCAAGGAAA
ATGCGGAGAAAGAGCCGAAAATAGGGGGCTACGCAACTTACCGGGGGGGT
GTCAGCGACGTTCCGGTCATAACTCCTTGCACAGACATCGCCTGATCGCA
CGTAAACTCGCGATGAGTAGATAAGCTTATATACGACACCGCCCGTTTCT
CGCCACACACGGCGCGGATGGACATCAGACCACGTGCACTACATTGGTAC
AGTCCATAGCTATCGTTCAAGCCGCTGTGGGGCGAAATCCACCCAGTCAG
TGCCATGGTACGCCTACACCCGGCGGGACGGTGTCCCCGAGGGCGGTGTC
GTAGATAAGCTTATAGACGACACCGCCCGTTTCTCGCCACACACGGCGCC
GATGGACACCACACCACGTGCACTACATTGTTATGGCCCATAGCTATCGT
TCAAGCCGCTGTGGGGCGAAATCCACCCAGTCAGTGCCATGGTACGCCTA
CACCCGCCGGGACGGTGTCCCCGAGGGCGGTGTCGTAGATAAGCTTATAG
ACGACACCGCCCGTTTCTTGGCACACACGGCGCCGATGGACACCACACCA
CGTGCACTACATTGTTATGGTCCATAGCTATCGTTCAAGCCGCTGTGGGG
CGAAATCCAATCAGTCAGTGCCATGGTAGGCCTACACCCGCCGGGACGGT
GTCCCCGAGGGCGGTGTCGTAGATAAGCTTATAGACGACACCGCCCGTTT
CTCGCCACACACGGCGCGGATGGACATCAGACCACGTGCACTTCATTGGT
ACAGCCCATAGCTATCGTTCAAGCCGCCGTGGGGCGAAATCCACCCAGTC
AGATTGTGGGTCAACCTTGTCAAAGGGGGGGGTAGCGTCCACCTGTGTTG
TTCGAAAAGCATGTCAGCCGCATATTCAAGTGTGATAAAGAGGTGAGATG
TCACCGGTGAGGAGCGAGAGGAGAGGGGGTGGGGGGAGGAGAGGGAAAGA
GAGGTGCCGGCGACAGGAGTGTAAAACGTGTCCACGAAGTCGAAACAGGG
ATTCGACATCATTTGGTAGGGTCCGGGTTAGGTGCGTATGCATGTTATTT
TATGCATACCATGCAACAAAGTTTTTTTCGGGGGGATCGAGGGCTCGAGG
ACACATGATCATGTACATCATGTGCCCACGACCACTGACACTAACGACGT
TCGAGCCGATCCACCGCGCCTACACTTGTATCATTACCCCCGAAGATGAG
ACGATGCGGTGCTAGTCATTCGGTCGTTTCTGTATCTGTTTTTGTGACTG
TCCGGTGGGGTGACCTCAGACCTACCCAGGAACTCGAGGTGTAAATTGTG
TGAGTGATGTTGCTGTGGAGAAAGGTTATTTAGTGCAATCCTCAGGCGAC
GAATCTGTGGTGCACAAGAATTGTAGATTCAGGCGACTCTCCCTTGACTG
CTGATCTATGGTCATTGATTTCGTTCACACGTCTTTTTGCTCGGCGTCCC
GAGTGCTGAGGGTAAGCTGGAGCGATGAGCTCTCCTTCTCTGTCTGGATG
GGAGGTTTGGTGCATGTGGACCAGGCAGTGCCATTGTAAATTTTTGGAGC
CAGCTCGGGCGTACAACTGAGCCGTTTGTTAGACTTTGATAGCGACCTTT
TAGGACGGACTAACCGATGTTAACCGTAGCAAGCCTAGGTTCCTGACGCG
CGCAAGGCCAGGTTTCTCACTCCAACCAACCCTAACCCTACCCCTCACCC
ACGGCTAACGCACGGCCTAGCGGCCGCGAACTGGGCGAGCATGCGGCGCA
GCCTCGTGCTCGGAACGGGGAGAGGGCGCTGGAGAGGAATCGGCCGTTAG
AACCAACGCCAAACAATGCCCGACCAATCAGAATGCGTTAGTCCTAAAGA
TCTACTATCAATCAATGTCTAGTGCGACAACTTGCGAACGAGACAACAAC
TTGCGAGGAGCGATGGATCCGAAAGGGCCAGCTTCTCTTCCTACGAATTC
CCGACGGAGTTGTTTGTATCTTCCGAACAAACACATAAAGCAACCACGAT
GGTAATTCGTTGTGTTTTGCAGGGGATGGACTAATAAATACTAGAAAAAC
CTGTATCGGCGGTGAAACGTGTGTGTTTTTTTCGAACGTGAAGATAACCT
TACAGAATCTCTTCGTCGACGGCAATGAGGATACTAGTCCCTGTCGGAGA
CAGATGCCGGTACTCTTGCAGTATTCACCCACTGCTAAGGGTGGCTATTT
CCTTTCGTTAGATGTAACGAGGAGAGGAAGGTAGAAAAAGACTGACCAGA
GGGTCGAGAGAGGAGAGCTGGAGGCTTCCCATCTCTTTTTTCGGCAATCG
GCCATGGACTTCGGAAGAGACAAATCTCCTCGGTGTTTTACGTGCCAATT
CTCCCGATGGCAAGTTACCCCGAGGAATCATATCCTCCTACATTTTGTAT
GTGGACAAATGGTTGGCTATATATTCCGACGGGCGTCCTCCCATACAGAA
CGATTTTATTTGTCTGCGAACATCGGAATTCGATTTGATTTCGATCTTTT
TTATCCACCCGAGCGCCGAAGACCGCGGGATCTTTAGGAATTTGATCTTT
CGCTTCTACGAATTGCCCTCAAAGGCCGCAGAAAAGATCAAACTCCATCT
TGCTCGCATCTATCTTTTTGGGAGCAGTTTCTGGTTGGCCTATACTCCCC
GAGATACTCCCGATGTTGTCCGGACACATGCCGCACCAGCCCGTGAGGCT
AGCTATGCACCCACACCTCGGCCATGATACACACTACCATGGCGAGCCAG
CTACAGTACCGCAAGACAGTTAGACAGTCGTCACTGCACGCCAGACCCGG
TGCAATGCATGCTGTCGATATGGTGCATTTGCGCCATTTGAACCGTAGCA
TACCGTTCTACATGCTCTTCTTGAGTGACACACCAAGTCGGCGTGACGAG
GATGACGGCGATGCTGCGAGCGGCATAAATCTTAGGAGTGCTGCACAGGC
GGAGGCGGAGGCGATGGGGTTAGGGATGCTTCAAGCGGCGTGGGAGCGTG
AGGAGCTGCCGCGCGTGCGTCCTGTGGACCGTGCTCCGGTGATGCGTCTG
TCGCGGACGATCGACTCCGTTGATGACTGGCGACGCGTATCACAAAACCT
CGGGGCAGCGGTAGTAGTAGGAGGAGGTCCTTGGCCTTCGTGCTGTGTGT
TCACCGAAACTCTGGCGAGGGGAGCGGCCCTCGCCGGAGGACTCGTGTTG
CCATGAACACCCGGCAACTGAACCGGGCCAGCCTTCTCATGAGTACGTTG
ACCTCCATCGTTCTCCATGATTGTTTAGCAGCGGTTGTGAGTGTAATGTT
GTGGTAGCCTTGCGGTGGGGGTGGAGGCGGA

protein sequence of EsuBft1192_10a-0001

>EsuBft1192_10 ID=EsuBft1192_10|Name=EsuBft1192_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=53bp
MRCVATARSYQPIPFWVKSAKENAEKEPKIGGYATYRGGVSDVPVITPCT
DIA

mRNA from alignment at Scaffold_82:132484..136256-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1192_10a-0001 ID=EsuBft1192_10a-0001|Name=EsuBft1192_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3773bp|location=Sequence derived from alignment at Scaffold_82:132484..136256- (Ectocarpus subulatus male Bft15b)
ATATTGGACACCGGTGTCGTACTTCCTTATATACGACACCTACCATTTCT
TGGCCCCCAGAGCTCCAATCGGCGTACAACAAAATGCGCTGTGTAGCCAC
GGCCCGCAGCTATCAGCCCATACCATTTTGGGTCAAATCGGCCAAGGAAA
ATGCGGAGAAAGAGCCGAAAATAGGGGGCTACGCAACTTACCGGGGGGGT
GTCAGCGACGTTCCGGTCATAACTCCTTGCACAGACATCGCCTGATCGCA
CGTAAACTCGCGATGAGTAGGTACAGTCCATAGCTATCGTTCAAGCCGCT
GTGGGGCGAAATCCACCCAGTCAGTGCCATGGTAGGCCTACACCCGGCGG
GACGGTGTCCCCGAGGGCGGTGTCGTAGATAAGCTTATAGACGACACCGC
CCGTTTCTCGGCACACACGGCGCCGATGGACACCACACCACGTGCACTAC
ATTGTTATGGTCCATAGCTATCGTTCAAGCCGCTGTGGGGCGAAATCCAA
TCAGTCAGTGCCATGGTAGGCCTACACCCGCCGGGACGGTGTCCCCGAGG
GCGGTGTCGTAGATAAGCTTATATACGACACCGCCCGTTTCTCGCCACAC
ACGGCGCGGATGGACATCAGACCACGTGCACTACATTGGTACAGTCCATA
GCTATCGTTCAAGCCGCTGTGGGGCGAAATCCACCCAGTCAGTGCCATGG
TACGCCTACACCCGGCGGGACGGTGTCCCCGAGGGCGGTGTCGTAGATAA
GCTTATAGACGACACCGCCCGTTTCTCGCCACACACGGCGCCGATGGACA
CCACACCACGTGCACTACATTGTTATGGCCCATAGCTATCGTTCAAGCCG
CTGTGGGGCGAAATCCACCCAGTCAGTGCCATGGTACGCCTACACCCGCC
GGGACGGTGTCCCCGAGGGCGGTGTCGTAGATAAGCTTATAGACGACACC
GCCCGTTTCTTGGCACACACGGCGCCGATGGACACCACACCACGTGCACT
ACATTGTTATGGTCCATAGCTATCGTTCAAGCCGCTGTGGGGCGAAATCC
AATCAGTCAGTGCCATGGTAGGCCTACACCCGCCGGGACGGTGTCCCCGA
GGGCGGTGTCGTAGATAAGCTTATAGACGACACCGCCCGTTTCTCGCCAC
ACACGGCGCGGATGGACATCAGACCACGTGCACTTCATTGGTACAGCCCA
TAGCTATCGTTCAAGCCGCCGTGGGGCGAAATCCACCCAGTCAGATTGTG
GGTCAACCTTGTCAAAGGGGGGGGTAGCGTCCACCTGTGTTGTTCGAAAA
GCATGTCAGCCGCATATTCAAGTGTGATAAAGAGGTGAGATGTCACCGGT
GAGGAGCGAGAGGAGAGGGGGTGGGGGGAGGAGAGGGAAAGAGAGGTGCC
GGCGACAGGAGTGTAAAACGTGTCCACGAAGTCGAAACAGGGATTCGACA
TCATTTGGTAGGGTCCGGGTTAGGTGCGTATGCATGTTATTTTATGCATA
CCATGCAACAAAGTTTTTTTCGGGGGGATCGAGGGCTCGAGGACACATGA
TCATGTACATCATGTGCCCACGACCACTGACACTAACGACGTTCGAGCCG
ATCCACCGCGCCTACACTTGTATCATTACCCCCGAAGATGAGACGATGCG
GTGCTAGTCATTCGGTCGTTTCTGTATCTGTTTTTGTGACTGTCCGGTGG
GGTGACCTCAGACCTACCCAGGAACTCGAGGTGTAAATTGTGTGAGTGAT
GTTGCTGTGGAGAAAGGTTATTTAGTGCAATCCTCAGGCGACGAATCTGT
GGTGCACAAGAATTGTAGATTCAGGCGACTCTCCCTTGACTGCTGATCTA
TGGTCATTGATTTCGTTCACACGTCTTTTTGCTCGGCGTCCCGAGTGCTG
AGGGTAAGCTGGAGCGATGAGCTCTCCTTCTCTGTCTGGATGGGAGGTTT
GGTGCATGTGGACCAGGCAGTGCCATTGTAAATTTTTGGAGCCAGCTCGG
GCGTACAACTGAGCCGTTTGTTAGACTTTGATAGCGACCTTTTAGGACGG
ACTAACCGATGTTAACCGTAGCAAGCCTAGGTTCCTGACGCGCGCAAGGC
CAGGTTTCTCACTCCAACCAACCCTAACCCTACCCCTCACCCACGGCTAA
CGCACGGCCTAGCGGCCGCGAACTGGGCGAGCATGCGGCGCAGCCTCGTG
CTCGGAACGGGGAGAGGGCGCTGGAGAGGAATCGGCCGTTAGAACCAACG
CCAAACAATGCCCGACCAATCAGAATGCGTTAGTCCTAAAGATCTACTAT
CAATCAATGTCTAGTGCGACAACTTGCGAACGAGACAACAACTTGCGAGG
AGCGATGGATCCGAAAGGGCCAGCTTCTCTTCCTACGAATTCCCGACGGA
GTTGTTTGTATCTTCCGAACAAACACATAAAGCAACCACGATGGTAATTC
GTTGTGTTTTGCAGGGGATGGACTAATAAATACTAGAAAAACCTGTATCG
GCGGTGAAACGTGTGTGTTTTTTTCGAACGTGAAGATAACCTTACAGAAT
CTCTTCGTCGACGGCAATGAGGATACTAGTCCCTGTCGGAGACAGATGCC
GGTACTCTTGCAGTATTCACCCACTGCTAAGGGTGGCTATTTCCTTTCGT
TAGATGTAACGAGGAGAGGAAGGTAGAAAAAGACTGACCAGAGGGTCGAG
AGAGGAGAGCTGGAGGCTTCCCATCTCTTTTTTCGGCAATCGGCCATGGA
CTTCGGAAGAGACAAATCTCCTCGGTGTTTTACGTGCCAATTCTCCCGAT
GGCAAGTTACCCCGAGGAATCATATCCTCCTACATTTTGTATGTGGACAA
ATGGTTGGCTATATATTCCGACGGGCGTCCTCCCATACAGAACGATTTTA
TTTGTCTGCGAACATCGGAATTCGATTTGATTTCGATCTTTTTTATCCAC
CCGAGCGCCGAAGACCGCGGGATCTTTAGGAATTTGATCTTTCGCTTCTA
CGAATTGCCCTCAAAGGCCGCAGAAAAGATCAAACTCCATCTTGCTCGCA
TCTATCTTTTTGGGAGCAGTTTCTGGTTGGCCTATACTCCCCGAGATACT
CCCGATGTTGTCCGGACACATGCCGCACCAGCCCGTGAGGCTAGCTATGC
ACCCACACCTCGGCCATGATACACACTACCATGGCGAGCCAGCTACAGTA
CCGCAAGACAGTTAGACAGTCGTCACTGCACGCCAGACCCGGTGCAATGC
ATGCTGTCGATATGGTGCATTTGCGCCATTTGAACCGTAGCATACCGTTC
TACATGCTCTTCTTGAGTGACACACCAAGTCGGCGTGACGAGGATGACGG
CGATGCTGCGAGCGGCATAAATCTTAGGAGTGCTGCACAGGCGGAGGCGG
AGGCGATGGGGTTAGGGATGCTTCAAGCGGCGTGGGAGCGTGAGGAGCTG
CCGCGCGTGCGTCCTGTGGACCGTGCTCCGGTGATGCGTCTGTCGCGGAC
GATCGACTCCGTTGATGACTGGCGACGCGTATCACAAAACCTCGGGGCAG
CGGTAGTAGTAGGAGGAGGTCCTTGGCCTTCGTGCTGTGTGTTCACCGAA
ACTCTGGCGAGGGGAGCGGCCCTCGCCGGAGGACTCGTGTTGCCATGAAC
ACCCGGCAACTGAACCGGGCCAGCCTTCTCATGAGTACGTTGACCTCCAT
CGTTCTCCATGATTGTTTAGCAGCGGTTGTGAGTGTAATGTTGTGGTAGC
CTTGCGGTGGGGGTGGAGGCGGA

Coding sequence (CDS) from alignment at Scaffold_82:132484..136256-

>EsuBft1192_10a-0001 ID=EsuBft1192_10a-0001|Name=EsuBft1192_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=162bp|location=Sequence derived from alignment at Scaffold_82:132484..136256- (Ectocarpus subulatus male Bft15b)
ATGCGCTGTGTAGCCACGGCCCGCAGCTATCAGCCCATACCATTTTGGGT
CAAATCGGCCAAGGAAAATGCGGAGAAAGAGCCGAAAATAGGGGGCTACG
CAACTTACCGGGGGGGTGTCAGCGACGTTCCGGTCATAACTCCTTGCACA
GACATCGCCTGA