Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 296587.XP_002506989.1 |
| ProteomeId | EsuBft1180_4 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 277 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.21e-15 |
| EggNOG OGs | 2E24P@1|root,2S9D9@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1180_4a-0001 ID=EsuBft1180_4a-0001|Name=EsuBft1180_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2774bp|location=Sequence derived from alignment at Scaffold_106:184712..187485+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCAAACACTTCCAACATGTCGTCATCCTCTTCGTGCAAGCATTTGGAGCT
GTACACATAGATCAGCAGAAGTCAGATACCTCAGATCTGTCTCCTCTTGC
AGCGGAAAGATATGAAGTAGCACGTGTTGAAAGACAACTCCAACTTGTCC
GAGCAACAAAGTTGCTTCATCTTACCCCAGCATTGCATGGATCGACTGAT
GGAAGGATGAACAGGGTATCCCGATTTAACCGCTTTGCAAATGGTGATCT
GAGTGAACCTATCGCCTGGCTCATGATGTACGAGAAGAATCGTCGACTTC
AGTATTATGCGGATACTGAAGACAATCGCCAAAGAAGAGCCACAAGACTT
GCGCACGAAAGCGGAGGCATCACTAAAGCTGCCAGTGCCTTAATTTCCCC
AGCACCTTCACCGCGCAACAACGACACGCTGGAGCATCTTCGCAACCTAC
ACCCTAACGAAGATCCTGACGATATTGCTACTGCGTGGGATTCCAGCATC
AAAGCTGCGGGAGATCGTATAAAAACGCACAAGATCGACTCCGTTGCCGA
AGCTGATGAACCATTCGAAATCAAGTTCATCAAGCAGACGGTAAAGAAAG
CCAACCCTCAGAGTGCTCCGGGGCCTGATGGTCTTCGTTTTTCGTATCTC
CAAGCTGGTGGGATGAGTGATTTTTTTACTGAAACCTTGGCGGACTTCAG
CTTTAAAGTCTTCTACTACGGAGACGAGCTTCCGGATTTCTTTTGGAACC
TCCACACCAGTGCCAACCTTTCAGCGCTGGGAGAGAAAAAACGGCCGATT
GCAGTTGGAGGGGTTTTGCGTCGCATCATCAGCGGCAGCTTCTGCCGCCA
GTACAAGGGAGGAATTGCGAACATCTTCGAAGCAGCAAATCAGTTCGGAG
GTGGTGTTCCAGGAGGAGTTGAGATAGTGGCTTCCACAGCAGCCCTCAGC
CACCAGCAAGGCAGCACCATTCTCTCCTTTGATGGGAAAAACGCTTACAA
CAGCATGCGCAGATCTTCCATCTTGCCAGCAGTGGCCACTCATACGCCAC
ACTTGGTGAAGTACTTCGGGAACATCTACGCTCGAACCAAGGCGAAACTT
CTGTTCAAAATGGAAGATGGTTCGATCGAGGTTGTTCTTTCACAGCGCGG
AGTTCAACAAGGCTGCAATTTGGGAGGGTTTGGCTTCTGTGTAGGACTTC
TTGATATCATGAAAGAGTTCAACAACAAGCCACCAGTGCCAGGAGTCAAA
CTCATCGGATACGTCGACGACCTCCAAGCACATCTTCCACCAGGTTTGGC
TAGGAACATGCAGGCCATATCCACTGTAACGAATTGGATTCAGGAACGTC
TCTCCCAAAAAGGCATTGAGCTCAGTCTCCCGAAATCCAAAGTGCTTTTC
CCGGAAGGTCTTTGCATGTCCTCTTTGACAAACGACGAACAGCAACAATT
GACGAAAATTGGTCTGTCAGTTACTGAAGGTGGCATGCCAGTTGTCGGGA
TCCCAGTAGGAACAGAGGAGTTCCAGAGGAATTTCGTTTCCAAAATCGCC
CGTGGTGACCCGGCGGAATTGATACTCCGCCTAGCAACGCTTGACGACCC
TCAAGCCAGCTATCAACTGCTGCGTTTATCTGGTGTGCCACGTTTGTTCC
ATCTGCTGAGGACGATTGCACCGTCTATCACCAACTCTGCCGCAAAAATA
CATGACAACATGATGATGTGGGCAATGAGTAAGATCGTCCTTGGCAAGAT
GGCCGACAGCATGAGAATACCAACGGTCAAAGAGGTACGCGCAGACCCGA
CGAAGAGCGAGGAGGTAGATTTCTTCAAAGGGACAGCTCGGGCGCAGGTG
CACCTACCCATGCGAGAAGGAGGACTAGGAATCACGAGCAATGTTCTCAT
TCGAGAATCGGCTTTTGTGGCAGGGCAAGCGCTGGTGTTCTCCAAGTCAG
TGCAAGCATCGACAGGATACACAGTTGAGCAATGTCTACCCCGGCTTGCC
CAGCTACCGACAGGATTGGCTCTGATTGACTCGCTGAAGAAGCTAGAGGA
AATCATCACCAAAGACAAGCTTGAAAAAGCTGTTGGGCAGTCATGGGCTA
AACTTGCCACAAGTGATGAGTTAACCCCCGCCCTCAAAGGAGTTTACTTG
TTGGAAGCAGGGAAGGCGGGAAAACCCCGTGAAGATGGAAACCCTGACGT
AGAACATCAACCACCGTCTACCTTCAGCCGAAATGAATTTGGTCAACACT
ACCAAGTCTTTGGAGCCCAAGCTCTCCTTTCGAAACCTCTTCATGCAGCA
GTGCGCCACATGGTGGAGACAGACTTGCAGAAAGTAGTAGGCGAGGAAAC
GCCAAAGAAGAGGGCGTTGATCCGCTTGGAGGAAGCGAAAGGCAAGGGAG
TTTTGTCGTGGTTGACAACGCAAGGGTTGTCAGCAGATGAAAGAATGCTG
CCTGATCTATATCGAGAGTCAATCGGTCGTGTACTGGGGAGTCACGATCG
AGCAGACTGCAACACAGGCAAACTTTGTGGTGCAGGTGCATTGTTACCAT
GCAAGGACCGCTTGAGCCGAGCCCACTCCCTCGTCTGCACCAAGACCGGC
GCCTCAACCTTCCTCCATAACAGGATGGTTCGAGTGGTCCTCAAGACACT
GCGCGAGTGCCATATGCCCATCGCCGTTGAGGATTCTTCCCCTTTTACCA
CAGGCACTGGTAGGGGAAAGGGGCCATACAAGATGGATTTGGTAATCCCC
CCAGGATTACACNNNNNNNNNNNN back to topprotein sequence of EsuBft1180_4a-0001 >EsuBft1180_4 ID=EsuBft1180_4|Name=EsuBft1180_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=856bp
MNRVSRFNRFANGDLSEPIAWLMMYEKNRRLQYYADTEDNRQRRATRLAH
ESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKA
AGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQA
GGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAV
GGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQ
QGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLF
KMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLI
GYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPE
GLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARG
DPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHD
NMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHL
PMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQL
PTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDELTPALKGVYLLE
AGKAGKPREDGNPDVEHQPPSTFSRNEFGQHYQVFGAQALLSKPLHAAVR
HMVETDLQKVVGEETPKKRALIRLEEAKGKGVLSWLTTQGLSADERMLPD
LYRESIGRVLGSHDRADCNTGKLCGAGALLPCKDRLSRAHSLVCTKTGAS
TFLHNRMVRVVLKTLRECHMPIAVEDSSPFTTGTGRGKGPYKMDLVIPPG
LHXXXX back to topmRNA from alignment at Scaffold_106:184712..187485+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1180_4a-0001 ID=EsuBft1180_4a-0001|Name=EsuBft1180_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2774bp|location=Sequence derived from alignment at Scaffold_106:184712..187485+ (Ectocarpus subulatus male Bft15b)
GCAAACACTTCCAACATGTCGTCATCCTCTTCGTGCAAGCATTTGGAGCT
GTACACATAGATCAGCAGAAGTCAGATACCTCAGATCTGTCTCCTCTTGC
AGCGGAAAGATATGAAGTAGCACGTGTTGAAAGACAACTCCAACTTGTCC
GAGCAACAAAGTTGCTTCATCTTACCCCAGCATTGCATGGATCGACTGAT
GGAAGGATGAACAGGGTATCCCGATTTAACCGCTTTGCAAATGGTGATCT
GAGTGAACCTATCGCCTGGCTCATGATGTACGAGAAGAATCGTCGACTTC
AGTATTATGCGGATACTGAAGACAATCGCCAAAGAAGAGCCACAAGACTT
GCGCACGAAAGCGGAGGCATCACTAAAGCTGCCAGTGCCTTAATTTCCCC
AGCACCTTCACCGCGCAACAACGACACGCTGGAGCATCTTCGCAACCTAC
ACCCTAACGAAGATCCTGACGATATTGCTACTGCGTGGGATTCCAGCATC
AAAGCTGCGGGAGATCGTATAAAAACGCACAAGATCGACTCCGTTGCCGA
AGCTGATGAACCATTCGAAATCAAGTTCATCAAGCAGACGGTAAAGAAAG
CCAACCCTCAGAGTGCTCCGGGGCCTGATGGTCTTCGTTTTTCGTATCTC
CAAGCTGGTGGGATGAGTGATTTTTTTACTGAAACCTTGGCGGACTTCAG
CTTTAAAGTCTTCTACTACGGAGACGAGCTTCCGGATTTCTTTTGGAACC
TCCACACCAGTGCCAACCTTTCAGCGCTGGGAGAGAAAAAACGGCCGATT
GCAGTTGGAGGGGTTTTGCGTCGCATCATCAGCGGCAGCTTCTGCCGCCA
GTACAAGGGAGGAATTGCGAACATCTTCGAAGCAGCAAATCAGTTCGGAG
GTGGTGTTCCAGGAGGAGTTGAGATAGTGGCTTCCACAGCAGCCCTCAGC
CACCAGCAAGGCAGCACCATTCTCTCCTTTGATGGGAAAAACGCTTACAA
CAGCATGCGCAGATCTTCCATCTTGCCAGCAGTGGCCACTCATACGCCAC
ACTTGGTGAAGTACTTCGGGAACATCTACGCTCGAACCAAGGCGAAACTT
CTGTTCAAAATGGAAGATGGTTCGATCGAGGTTGTTCTTTCACAGCGCGG
AGTTCAACAAGGCTGCAATTTGGGAGGGTTTGGCTTCTGTGTAGGACTTC
TTGATATCATGAAAGAGTTCAACAACAAGCCACCAGTGCCAGGAGTCAAA
CTCATCGGATACGTCGACGACCTCCAAGCACATCTTCCACCAGGTTTGGC
TAGGAACATGCAGGCCATATCCACTGTAACGAATTGGATTCAGGAACGTC
TCTCCCAAAAAGGCATTGAGCTCAGTCTCCCGAAATCCAAAGTGCTTTTC
CCGGAAGGTCTTTGCATGTCCTCTTTGACAAACGACGAACAGCAACAATT
GACGAAAATTGGTCTGTCAGTTACTGAAGGTGGCATGCCAGTTGTCGGGA
TCCCAGTAGGAACAGAGGAGTTCCAGAGGAATTTCGTTTCCAAAATCGCC
CGTGGTGACCCGGCGGAATTGATACTCCGCCTAGCAACGCTTGACGACCC
TCAAGCCAGCTATCAACTGCTGCGTTTATCTGGTGTGCCACGTTTGTTCC
ATCTGCTGAGGACGATTGCACCGTCTATCACCAACTCTGCCGCAAAAATA
CATGACAACATGATGATGTGGGCAATGAGTAAGATCGTCCTTGGCAAGAT
GGCCGACAGCATGAGAATACCAACGGTCAAAGAGGTACGCGCAGACCCGA
CGAAGAGCGAGGAGGTAGATTTCTTCAAAGGGACAGCTCGGGCGCAGGTG
CACCTACCCATGCGAGAAGGAGGACTAGGAATCACGAGCAATGTTCTCAT
TCGAGAATCGGCTTTTGTGGCAGGGCAAGCGCTGGTGTTCTCCAAGTCAG
TGCAAGCATCGACAGGATACACAGTTGAGCAATGTCTACCCCGGCTTGCC
CAGCTACCGACAGGATTGGCTCTGATTGACTCGCTGAAGAAGCTAGAGGA
AATCATCACCAAAGACAAGCTTGAAAAAGCTGTTGGGCAGTCATGGGCTA
AACTTGCCACAAGTGATGAGTTAACCCCCGCCCTCAAAGGAGTTTACTTG
TTGGAAGCAGGGAAGGCGGGAAAACCCCGTGAAGATGGAAACCCTGACGT
AGAACATCAACCACCGTCTACCTTCAGCCGAAATGAATTTGGTCAACACT
ACCAAGTCTTTGGAGCCCAAGCTCTCCTTTCGAAACCTCTTCATGCAGCA
GTGCGCCACATGGTGGAGACAGACTTGCAGAAAGTAGTAGGCGAGGAAAC
GCCAAAGAAGAGGGCGTTGATCCGCTTGGAGGAAGCGAAAGGCAAGGGAG
TTTTGTCGTGGTTGACAACGCAAGGGTTGTCAGCAGATGAAAGAATGCTG
CCTGATCTATATCGAGAGTCAATCGGTCGTGTACTGGGGAGTCACGATCG
AGCAGACTGCAACACAGGCAAACTTTGTGGTGCAGGTGCATTGTTACCAT
GCAAGGACCGCTTGAGCCGAGCCCACTCCCTCGTCTGCACCAAGACCGGC
GCCTCAACCTTCCTCCATAACAGGATGGTTCGAGTGGTCCTCAAGACACT
GCGCGAGTGCCATATGCCCATCGCCGTTGAGGATTCTTCCCCTTTTACCA
CAGGCACTGGTAGGGGAAAGGGGCCATACAAGATGGATTTGGTAATCCCC
CCAGGATTACACNNNNNNNNNNNN back to topCoding sequence (CDS) from alignment at Scaffold_106:184712..187485+ >EsuBft1180_4a-0001 ID=EsuBft1180_4a-0001|Name=EsuBft1180_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2568bp|location=Sequence derived from alignment at Scaffold_106:184712..187485+ (Ectocarpus subulatus male Bft15b)
ATGAACAGGGTATCCCGATTTAACCGCTTTGCAAATGGTGATCTGAGTGA
ACCTATCGCCTGGCTCATGATGTACGAGAAGAATCGTCGACTTCAGTATT
ATGCGGATACTGAAGACAATCGCCAAAGAAGAGCCACAAGACTTGCGCAC
GAAAGCGGAGGCATCACTAAAGCTGCCAGTGCCTTAATTTCCCCAGCACC
TTCACCGCGCAACAACGACACGCTGGAGCATCTTCGCAACCTACACCCTA
ACGAAGATCCTGACGATATTGCTACTGCGTGGGATTCCAGCATCAAAGCT
GCGGGAGATCGTATAAAAACGCACAAGATCGACTCCGTTGCCGAAGCTGA
TGAACCATTCGAAATCAAGTTCATCAAGCAGACGGTAAAGAAAGCCAACC
CTCAGAGTGCTCCGGGGCCTGATGGTCTTCGTTTTTCGTATCTCCAAGCT
GGTGGGATGAGTGATTTTTTTACTGAAACCTTGGCGGACTTCAGCTTTAA
AGTCTTCTACTACGGAGACGAGCTTCCGGATTTCTTTTGGAACCTCCACA
CCAGTGCCAACCTTTCAGCGCTGGGAGAGAAAAAACGGCCGATTGCAGTT
GGAGGGGTTTTGCGTCGCATCATCAGCGGCAGCTTCTGCCGCCAGTACAA
GGGAGGAATTGCGAACATCTTCGAAGCAGCAAATCAGTTCGGAGGTGGTG
TTCCAGGAGGAGTTGAGATAGTGGCTTCCACAGCAGCCCTCAGCCACCAG
CAAGGCAGCACCATTCTCTCCTTTGATGGGAAAAACGCTTACAACAGCAT
GCGCAGATCTTCCATCTTGCCAGCAGTGGCCACTCATACGCCACACTTGG
TGAAGTACTTCGGGAACATCTACGCTCGAACCAAGGCGAAACTTCTGTTC
AAAATGGAAGATGGTTCGATCGAGGTTGTTCTTTCACAGCGCGGAGTTCA
ACAAGGCTGCAATTTGGGAGGGTTTGGCTTCTGTGTAGGACTTCTTGATA
TCATGAAAGAGTTCAACAACAAGCCACCAGTGCCAGGAGTCAAACTCATC
GGATACGTCGACGACCTCCAAGCACATCTTCCACCAGGTTTGGCTAGGAA
CATGCAGGCCATATCCACTGTAACGAATTGGATTCAGGAACGTCTCTCCC
AAAAAGGCATTGAGCTCAGTCTCCCGAAATCCAAAGTGCTTTTCCCGGAA
GGTCTTTGCATGTCCTCTTTGACAAACGACGAACAGCAACAATTGACGAA
AATTGGTCTGTCAGTTACTGAAGGTGGCATGCCAGTTGTCGGGATCCCAG
TAGGAACAGAGGAGTTCCAGAGGAATTTCGTTTCCAAAATCGCCCGTGGT
GACCCGGCGGAATTGATACTCCGCCTAGCAACGCTTGACGACCCTCAAGC
CAGCTATCAACTGCTGCGTTTATCTGGTGTGCCACGTTTGTTCCATCTGC
TGAGGACGATTGCACCGTCTATCACCAACTCTGCCGCAAAAATACATGAC
AACATGATGATGTGGGCAATGAGTAAGATCGTCCTTGGCAAGATGGCCGA
CAGCATGAGAATACCAACGGTCAAAGAGGTACGCGCAGACCCGACGAAGA
GCGAGGAGGTAGATTTCTTCAAAGGGACAGCTCGGGCGCAGGTGCACCTA
CCCATGCGAGAAGGAGGACTAGGAATCACGAGCAATGTTCTCATTCGAGA
ATCGGCTTTTGTGGCAGGGCAAGCGCTGGTGTTCTCCAAGTCAGTGCAAG
CATCGACAGGATACACAGTTGAGCAATGTCTACCCCGGCTTGCCCAGCTA
CCGACAGGATTGGCTCTGATTGACTCGCTGAAGAAGCTAGAGGAAATCAT
CACCAAAGACAAGCTTGAAAAAGCTGTTGGGCAGTCATGGGCTAAACTTG
CCACAAGTGATGAGTTAACCCCCGCCCTCAAAGGAGTTTACTTGTTGGAA
GCAGGGAAGGCGGGAAAACCCCGTGAAGATGGAAACCCTGACGTAGAACA
TCAACCACCGTCTACCTTCAGCCGAAATGAATTTGGTCAACACTACCAAG
TCTTTGGAGCCCAAGCTCTCCTTTCGAAACCTCTTCATGCAGCAGTGCGC
CACATGGTGGAGACAGACTTGCAGAAAGTAGTAGGCGAGGAAACGCCAAA
GAAGAGGGCGTTGATCCGCTTGGAGGAAGCGAAAGGCAAGGGAGTTTTGT
CGTGGTTGACAACGCAAGGGTTGTCAGCAGATGAAAGAATGCTGCCTGAT
CTATATCGAGAGTCAATCGGTCGTGTACTGGGGAGTCACGATCGAGCAGA
CTGCAACACAGGCAAACTTTGTGGTGCAGGTGCATTGTTACCATGCAAGG
ACCGCTTGAGCCGAGCCCACTCCCTCGTCTGCACCAAGACCGGCGCCTCA
ACCTTCCTCCATAACAGGATGGTTCGAGTGGTCCTCAAGACACTGCGCGA
GTGCCATATGCCCATCGCCGTTGAGGATTCTTCCCCTTTTACCACAGGCA
CTGGTAGGGGAAAGGGGCCATACAAGATGGATTTGGTAATCCCCCCAGGA
TTACACNNNNNNNNNNNN back to top
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