EsuBft1180_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1180_2a-0001
Unique Name	EsuBft1180_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:172749..176081 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FYJ3
ProteomeId	EsuBft1180_2
Protein domains	IPR012816
Protein domains	PTHR11079
Protein domains	SSF143990
Owner	apollo_admin@sb-roscoff.fr
Note	Uncharacterized protein R617 OS:Acanthamoeba polyphaga mimivirus GN:MIMI [Automatic annotation]
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	2256
Hectar predicted targeting category	other localisation
Evalue	9.57e-49
EggNOG OGs	COG3236@1\|root,2S4FY@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K09935
Description	Domain of unknown function (DUF1768)
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_2a	EsuBft1180_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 172749..176081 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_2a-0001-exon	agat-exon-58693	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 172749..173308 -
EsuBft1180_2a-0001-exon	EsuBft1180_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 173471..174120 -
EsuBft1180_2a-0001-exon	agat-exon-58694	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 174548..174551 -
EsuBft1180_2a-0001-exon	agat-exon-58692	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 175040..176081 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_2a-0001-cds	EsuBft1180_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 172749..173308 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_2a-0001	EsuBft1180_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 172749..176081 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:172749..176081-
coding sequence from alignment at Scaffold_106:172749..176081-

spliced messenger RNA

>EsuBft1180_2a-0001 ID=EsuBft1180_2a-0001|Name=EsuBft1180_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2256bp|location=Sequence derived from alignment at Scaffold_106:172749..176081- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAGCTGAAGCCGGAACAACTTGATAGTGTCACACGCTTGCCCCT
CGGTCCTGATCCTGATGAATTTGCTCGCTTCGCGTCTAGCTGCAAGGGTG
TGGTCACAGAGATCCTCAACAAAAGCGACGTCAAGCGCAAGCAGACTTTC
AGTTCCTCCACCTGGGTCACCGGATGGCTTCCGTTGTTGCGCAAACGTGT
CCGTGCTGCTGTCGTTGAAGGCCAAACCACCAACCGTGCCACTCTGGAAT
TTCTTGATGCCACCTTCCTACAGGTAGAAAACCATCTGCGCAAGGAACCG
GCAGGGCCCTCGACGTACGCCTTCTTCATCCAGAAATTGGCGGCCGCCTG
GGACACTCAAGACAAGAGCTCGGGGATTGATCGTCTTCGCAGTTTTGGCG
TATCCAACGGCGAGACTTACGGAGAATACATCCGTCGCTATAAGGCTCTG
GCCATGACCGTCATGGTTTCCCACCACGCGTTCAAGCCTTCGGATGCGCA
AGTGCAGATAGCTGTTCGAGACTCCATGTTGAAACAGTTTCCGGTAGTGT
CTGGGCAGGTGTACAAGGATGAGCAGCTCTCCATGGAAGCCCCTTTTGGG
CGACATGCTTCGTGTCTGGATGATATGTGGGATGTGTTGGACAAGCGTGC
GTTCGCGCACACGCCGGCGGTACATGGAGATGATTTCTTTTCGGTATCTT
CCACGAATGCTAGGAGTTCGTCTGCTGTTTCGCGTGCTGTAGCTTCTTCG
GCGTTGCGTTCGACGGTGACCCCTTCGTGGAGCCAAGGTTCTTCGGCCGC
CGTGATGAGTGTTGACCCTCTACCTAATGATGATCGGGACCCTTTTCTGT
TGCACTACAGCGACTGGCCGTTGCAAGGACACTTCCAAGAGGTGTACAAC
GTCGCTAGTGAGATGGCTCTAACCAAGAATGATCCGCCATTGTTCACCCC
CTTGGTCTCGGCTGAAGAGCGCCGCAACGCGCTTCGACTGTACAAGGGCA
AGTGCCTCAACTGCTTGGGAGAAGACCACTCCTTCAAATCCTGGAGCCGA
ATGGCCTCTGCTAACATTGACCCCGCCGGAGCCGCCGCCCTAAGGCCGCC
CTCCGGATCACGGAGCGTTGCGACTTCGCCCGCTCCTGCCTCGCTTTCTG
GGTCCTCCCCGTCGGAGAAGAGGACCCGTCCGCCTGGTCCACCCCCGCCT
GTGCCTGGTGCCCGCTCTTTGCCCCTTCGCCCTGCACCGGCTCCGCCGTT
TGATGACAAGTGCGAGTACGCTTCGGATGACGTCCTTCTTTTCTGGAAAC
CTCCGTCTGTGTTCTCGCAATGGACTCCTTCGGCTTTTGACGTACTGGGG
GTACGTTATTCATGTGGTGAGCAATTCATGATGTCTGAAAAAGCGAAGTT
GTTTGGAGATATGACGTCGTATGACAAAATTATGGCTGCAACAGATCCTA
AGACACACAAGTTTTTGGGTCGAAATGTGCGTCCTTTCGACTATGCTGAA
TGGGAGCGTCGTCGTGAAGAGATCGTGCTTACGGGGTCGTACGCCAAATT
TGCTCAAAACCATGACATGAAACATCATCTACTGGAGACGGGTACCCGCC
TCCTTGCAGAAGCCAGCCCCTTCGATCGTGTTTGGGGTATCGGCATGTCT
GCATGCTTTCCAGATGCTAGCGATTCATCCAAGTGGGCGGCTAGCGGTTC
TTCGCTACGGAAGGACCCGGGCGAAGACCCAGCTTGTCTACGTTTGGACG
CTCCGGGGGACCATGCTCCTGGCGTTCATCTGGTGGCATCGACCTCCGCT
TGTGCAGACCAGCCTCCTCTTCTCGAACATGGGCCCGATCTGGTCGGCGG
CACGCTCCTGTTGGACTCGGACTCATACACCACCCGGGTCCTGCTGCATG
GAGGACCTACAGCCACTTCTCAACTCGCGCGAGTGGCGCTTCTGGACTCT
GGGTCTCCTGCATCCTTCGTTTCCGACTCCGTGGTCACCGCCATGATAGC
TGCCGGAGCCCTGACAGCTGGCAGCGTTCGTGTTTTGCCCTTTCGTCGTT
GGGGTGGGTTTGGTGATGGACCCGCCCTTGTGACCACCCGGTCGATTGGT
CTCACCGTTAATTTTCTCCATGGAGATAGAGCTACCGCTTCCTTGGCGGT
CTGGGCCTGTGTTGTTCCAGACGCCGCCATGGGGCACGCCGTGCTTCTGG
GTCGTGATAGCTGGATGAGCTTCAACTCTCGCGTGTTCACCACCCTCCCC
CANNNN

protein sequence of EsuBft1180_2a-0001

>EsuBft1180_2 ID=EsuBft1180_2|Name=EsuBft1180_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=752bp
MDKLKPEQLDSVTRLPLGPDPDEFARFASSCKGVVTEILNKSDVKRKQTF
SSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQVENHLRKEP
AGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGEYIRRYKAL
AMTVMVSHHAFKPSDAQVQIAVRDSMLKQFPVVSGQVYKDEQLSMEAPFG
RHASCLDDMWDVLDKRAFAHTPAVHGDDFFSVSSTNARSSSAVSRAVASS
ALRSTVTPSWSQGSSAAVMSVDPLPNDDRDPFLLHYSDWPLQGHFQEVYN
VASEMALTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSWSR
MASANIDPAGAAALRPPSGSRSVATSPAPASLSGSSPSEKRTRPPGPPPP
VPGARSLPLRPAPAPPFDDKCEYASDDVLLFWKPPSVFSQWTPSAFDVLG
VRYSCGEQFMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAE
WERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGMS
ACFPDASDSSKWAASGSSLRKDPGEDPACLRLDAPGDHAPGVHLVASTSA
CADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDS
GSPASFVSDSVVTAMIAAGALTAGSVRVLPFRRWGGFGDGPALVTTRSIG
LTVNFLHGDRATASLAVWACVVPDAAMGHAVLLGRDSWMSFNSRVFTTLP
XX

mRNA from alignment at Scaffold_106:172749..176081-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1180_2a-0001 ID=EsuBft1180_2a-0001|Name=EsuBft1180_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3333bp|location=Sequence derived from alignment at Scaffold_106:172749..176081- (Ectocarpus subulatus male Bft15b)
ATGGACAAGCTGAAGCCGGAACAACTTGATAGTGTCACACGCTTGCCCCT
CGGTCCTGATCCTGATGAATTTGCTCGCTTCGCGTCTAGCTGCAAGGGTG
TGGTCACAGAGATCCTCAACAAAAGCGACGTCAAGCGCAAGCAGACTTTC
AGTTCCTCCACCTGGGTCACCGGATGGCTTCCGTTGTTGCGCAAACGTGT
CCGTGCTGCTGTCGTTGAAGGCCAAACCACCAACCGTGCCACTCTGGAAT
TTCTTGATGCCACCTTCCTACAGGTAGAAAACCATCTGCGCAAGGAACCG
GCAGGGCCCTCGACGTACGCCTTCTTCATCCAGAAATTGGCGGCCGCCTG
GGACACTCAAGACAAGAGCTCGGGGATTGATCGTCTTCGCAGTTTTGGCG
TATCCAACGGCGAGACTTACGGAGAATACATCCGTCGCTATAAGGCTCTG
GCCATGACCGTCATGGTTTCCCACCACGCGTTCAAGCCTTCGGATGCGCA
AGTGCAGATAGCTGTTCGAGACTCCATGTTGAAACAGTTTCCGGTAGTGT
CTGGGCAGGTGTACAAGGATGAGCAGCTCTCCATGGAAGCCCCTTTTGGG
CGACATGCTTCGTGTCTGGATGATATGTGGGATGTGTTGGACAAGCGTGC
GTTCGCGCACACGCCGGCGGTACATGGAGATGATTTCTTTTCGGTATCTT
CCACGAATGCTAGGAGTTCGTCTGCTGTTTCGCGTGCTGTAGCTTCTTCG
GCGTTGCGTTCGACGGTGACCCCTTCGTGGAGCCAAGGTTCTTCGGCCGC
CGTGATGAGTGTTGACCCTCTACCTAATGATGATCGGGACCCTTTTCTGT
TGCACTACAGCGACTGGCCGTTGCAAGGACACTTCCAAGAGGTGTACAAC
GTCGCTAGTGAGATGGCTCTAACCAAGAATGATCCGCCATTGTTCACCCC
CTTGGTCTCGGCTGAAGAGCGCCGCAACGCGCTTCGACTGTACAAGGGCA
AGTGCCTCAACTGCTTGGGAGAAGACCACTCCTTCAAATCCTGTAATCGT
GGTTTCGTGAACGCCACCGGCCTGCTTAACAATGACATCAAGTTCTGTAT
GGAAAAAGATCCCACCCTTTGGGGTCGGTGGAAAAAGCGCATGACCTCGT
ATAGACGCCCTACAGGACGCAACCCACATCGAAATCACCCCTTAGGACGC
GCCCGCCGCTCATCTGACACATCGGACACGAAACAGTCCTCACACACAGA
GCACTCGTCGGACGCTTCCACTTCGACAAAAAGGGGCTGAAGGGGTAAGA
AATGACAAGCCGATGGCGGAGTTCAGCCGGTACTACCGTCAACAGCAACC
ACCGTGCACCCTTTTGGAGTCTCCCAACATGTTCGTGTACAGCCTATTTC
TTTGGATACTCCCCACGCTCCTAAATCACATCTAGTTTCTCGGCCCGCCT
CCTCGTCGTCCGCCTCATCGCCTGCTGGTAATGGACATGACAGACCCATT
TCGGCACTACCTTTGTGGTGTGGGCGACAGGGAGGTAAGACGTCGAGCGG
TCCATCCCTGCTCACCTCGTCGTCTCGGGTTACAGAAGGAACAAGAACCT
CGTCTTCTACTATTCGTCAAGACTCTCCTGGTGTTGTCAGCCGGGCCTCT
TCTCGGATCGCACACGAGCCTTCTTCTACACTCGTCGGGAACCCCGTCGA
TCCTCCTTCTCTTTCGCAGCTTTCGTTGTCTTCGACCGTCCGCTGCCCCC
GTGTGACAGCACCTGATACGAATGCGACTTCCTCTGCTGCCCACCACGTG
CTGACTGCACCACTGCCATCGGGATCGGATGGTAGTGCCCACCATTCTGT
GGAAGGTTCGGCTCCTTTGTCAAGGGGGAGTAGTCAAGAGCGCCCTGCGT
CAATGATCAAACATCCGTCTGTTGCAGGAATGACTTCTCCTAACGAACGG
GTCTCTAATAGCCGAATGGCCTCTGCTAACATTGACCCCGCCGGAGCCGC
CGCCCTAAGGCCGCCCTCCGGATCACGGAGCGTTGCGACTTCGCCCGCTC
CTGCCTCGCTTTCTGGGTCCTCCCCGTCGGAGAAGAGGACCCGTCCGCCT
GGTCCACCCCCGCCTGTGCCTGGTGCCCGCTCTTTGCCCCTTCGCCCTGC
ACCGGCTCCGCCGTTTGATGACAAGTGCGAGTACGCTTCGGATGACGTCC
TTCTTTTCTGGAAACCTCCGTCTGTGTTCTCGCAATGGACTCCTTCGGCT
TTTGACGTACTGGGGGTACGTTATTCATGTGGTGAGCAATTCATGATGTC
TGAAAAAGCGAAGTTGTTTGGAGATATGACGTCGTATGACAAAATTATGG
CTGCAACAGATCCTAAGACACACAAGTTTTTGGGTCGAAATGTGCGTCCT
TTCGACTATGCTGAATGGGAGCGTCGTCGTGAAGAGATCGTGCTTACGGG
GTCGTACGCCAAATTTGCTCAAAACCATGACATGAAACATCATCTACTGG
AGACGGGTACCCGCCTCCTTGCAGAAGCCAGCCCCTTCGATCGTGTTTGG
GGTATCGGCATGTCTGCATGCTTTCCAGATGCTAGCGATTCATCCAAGTG
GGCGGCTAGCGGTAAAAACTTGTTGGGAAAAGCTTTGATGGAAGTTCGAC
GCCTTTTGCGTGATCATCCCCTGTCTGGTGAAGATTTCCCCGTTTCCAAT
TCTCTCACGCCCCCCATTTCGCATCCTCCTCTCCATAGACATCGACGCAT
TCATGAGGTTGCTACTGCTACAGGTTCTTCGCTACGGAAGGACCCGGGCG
AAGACCCAGCTTGTCTACGTTTGGACGCTCCGGGGGACCATGCTCCTGGC
GTTCATCTGGTGGCATCGACCTCCGCTTGTGCAGACCAGCCTCCTCTTCT
CGAACATGGGCCCGATCTGGTCGGCGGCACGCTCCTGTTGGACTCGGACT
CATACACCACCCGGGTCCTGCTGCATGGAGGACCTACAGCCACTTCTCAA
CTCGCGCGAGTGGCGCTTCTGGACTCTGGGTCTCCTGCATCCTTCGTTTC
CGACTCCGTGGTCACCGCCATGATAGCTGCCGGAGCCCTGACAGCTGGCA
GCGTTCGTGTTTTGCCCTTTCGTCGTTGGGGTGGGTTTGGTGATGGACCC
GCCCTTGTGACCACCCGGTCGATTGGTCTCACCGTTAATTTTCTCCATGG
AGATAGAGCTACCGCTTCCTTGGCGGTCTGGGCCTGTGTTGTTCCAGACG
CCGCCATGGGGCACGCCGTGCTTCTGGGTCGTGATAGCTGGATGAGCTTC
AACTCTCGCGTGTTCACCACCCTCCCCCANNNN

Coding sequence (CDS) from alignment at Scaffold_106:172749..176081-

>EsuBft1180_2a-0001 ID=EsuBft1180_2a-0001|Name=EsuBft1180_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2256bp|location=Sequence derived from alignment at Scaffold_106:172749..176081- (Ectocarpus subulatus male Bft15b)
ATGGACAAGCTGAAGCCGGAACAACTTGATAGTGTCACACGCTTGCCCCT
CGGTCCTGATCCTGATGAATTTGCTCGCTTCGCGTCTAGCTGCAAGGGTG
TGGTCACAGAGATCCTCAACAAAAGCGACGTCAAGCGCAAGCAGACTTTC
AGTTCCTCCACCTGGGTCACCGGATGGCTTCCGTTGTTGCGCAAACGTGT
CCGTGCTGCTGTCGTTGAAGGCCAAACCACCAACCGTGCCACTCTGGAAT
TTCTTGATGCCACCTTCCTACAGGTAGAAAACCATCTGCGCAAGGAACCG
GCAGGGCCCTCGACGTACGCCTTCTTCATCCAGAAATTGGCGGCCGCCTG
GGACACTCAAGACAAGAGCTCGGGGATTGATCGTCTTCGCAGTTTTGGCG
TATCCAACGGCGAGACTTACGGAGAATACATCCGTCGCTATAAGGCTCTG
GCCATGACCGTCATGGTTTCCCACCACGCGTTCAAGCCTTCGGATGCGCA
AGTGCAGATAGCTGTTCGAGACTCCATGTTGAAACAGTTTCCGGTAGTGT
CTGGGCAGGTGTACAAGGATGAGCAGCTCTCCATGGAAGCCCCTTTTGGG
CGACATGCTTCGTGTCTGGATGATATGTGGGATGTGTTGGACAAGCGTGC
GTTCGCGCACACGCCGGCGGTACATGGAGATGATTTCTTTTCGGTATCTT
CCACGAATGCTAGGAGTTCGTCTGCTGTTTCGCGTGCTGTAGCTTCTTCG
GCGTTGCGTTCGACGGTGACCCCTTCGTGGAGCCAAGGTTCTTCGGCCGC
CGTGATGAGTGTTGACCCTCTACCTAATGATGATCGGGACCCTTTTCTGT
TGCACTACAGCGACTGGCCGTTGCAAGGACACTTCCAAGAGGTGTACAAC
GTCGCTAGTGAGATGGCTCTAACCAAGAATGATCCGCCATTGTTCACCCC
CTTGGTCTCGGCTGAAGAGCGCCGCAACGCGCTTCGACTGTACAAGGGCA
AGTGCCTCAACTGCTTGGGAGAAGACCACTCCTTCAAATCCTGGAGCCGA
ATGGCCTCTGCTAACATTGACCCCGCCGGAGCCGCCGCCCTAAGGCCGCC
CTCCGGATCACGGAGCGTTGCGACTTCGCCCGCTCCTGCCTCGCTTTCTG
GGTCCTCCCCGTCGGAGAAGAGGACCCGTCCGCCTGGTCCACCCCCGCCT
GTGCCTGGTGCCCGCTCTTTGCCCCTTCGCCCTGCACCGGCTCCGCCGTT
TGATGACAAGTGCGAGTACGCTTCGGATGACGTCCTTCTTTTCTGGAAAC
CTCCGTCTGTGTTCTCGCAATGGACTCCTTCGGCTTTTGACGTACTGGGG
GTACGTTATTCATGTGGTGAGCAATTCATGATGTCTGAAAAAGCGAAGTT
GTTTGGAGATATGACGTCGTATGACAAAATTATGGCTGCAACAGATCCTA
AGACACACAAGTTTTTGGGTCGAAATGTGCGTCCTTTCGACTATGCTGAA
TGGGAGCGTCGTCGTGAAGAGATCGTGCTTACGGGGTCGTACGCCAAATT
TGCTCAAAACCATGACATGAAACATCATCTACTGGAGACGGGTACCCGCC
TCCTTGCAGAAGCCAGCCCCTTCGATCGTGTTTGGGGTATCGGCATGTCT
GCATGCTTTCCAGATGCTAGCGATTCATCCAAGTGGGCGGCTAGCGGTTC
TTCGCTACGGAAGGACCCGGGCGAAGACCCAGCTTGTCTACGTTTGGACG
CTCCGGGGGACCATGCTCCTGGCGTTCATCTGGTGGCATCGACCTCCGCT
TGTGCAGACCAGCCTCCTCTTCTCGAACATGGGCCCGATCTGGTCGGCGG
CACGCTCCTGTTGGACTCGGACTCATACACCACCCGGGTCCTGCTGCATG
GAGGACCTACAGCCACTTCTCAACTCGCGCGAGTGGCGCTTCTGGACTCT
GGGTCTCCTGCATCCTTCGTTTCCGACTCCGTGGTCACCGCCATGATAGC
TGCCGGAGCCCTGACAGCTGGCAGCGTTCGTGTTTTGCCCTTTCGTCGTT
GGGGTGGGTTTGGTGATGGACCCGCCCTTGTGACCACCCGGTCGATTGGT
CTCACCGTTAATTTTCTCCATGGAGATAGAGCTACCGCTTCCTTGGCGGT
CTGGGCCTGTGTTGTTCCAGACGCCGCCATGGGGCACGCCGTGCTTCTGG
GTCGTGATAGCTGGATGAGCTTCAACTCTCGCGTGTTCACCACCCTCCCC
CANNNN