Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft1180_11 |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 4 |
Length | 300 |
Hectar predicted targeting category | other localisation |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1180_11a-0001 ID=EsuBft1180_11a-0001|Name=EsuBft1180_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3008bp|location=Sequence derived from alignment at Scaffold_106:234836..239497- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCTGCCTGCAAAAACGTTTCTTATAACGAATCGGTTTTTCTTTTGGAGT TGGTGCCTCTTTGCGGCGGCGTTCGTATTTTCAAACGCGTGCACTGCTGT TGTGCCGCACGGGCGCGGGAATTTGAACACACGCGGGCGGAACAGACGTA GCTCTCAGACTCCCAGCACGCCGGTGTACAGACCTCCCACGCCATGCCGG CTACGTAATCTCTGCTGCTAGACAAGATCCCCCTGTTGACGGTGGCTTTG GAGTTGTTTAGTTCCGGAATCGGCGATGGATTGACGATGAAGGAAGTTGT CAGGCAGCTGCAGACGGTCGCTCTCTGCTATACCGCGATGGGAGTCAAGA GGAACGCAGGAGAGATAGACAGCAAGAAGAGAGAGGCGCTGCTACTCAAG GCATACAAGGACGACGTCGTGCCTGGCTTTCTGAAATGGTTGTCGGAGGA GGGTGATTGTACAACCCCGCCCTGGCTGACGATGGAGATGATGGGCCGGG TTGCTGTACATACATGTAGGCACCAATGGCACAGGAACGCCGGTGCGGAA GAGCAAGGGGAAAGAGAAACAGCAGCAACCGAAAGTCTATATGAAGAACC AAAGCTGTACAAGGACGGGAAGAAGATCTGGGCAAGGTACCTGGATGCCT TCCGCGACATCAGGAAGGACGCCAACCCCGTGTACGACAAAACCATCGGG GACCAACCGGGCGGGACCCCTCCATCTGGAGAGCAGTATGCCGACCAGCT TGACGAGTTACTGCAGGCGTTGTGGGAATACCAATGCAGAGAAAAAAATA AAACCGTGGAAGTGACCGCGGAGGAGAAGGAATTCTTGCGCGCACGTGGC CCCTCGGCGGCGAAGGGCAAGGGTACGGGAAGCGGTTCCTCGGCCGTCGA CGTAGACCTCTCTTCCACGGACGGGGAGGTCGTACAAGGTACGGAGAAGG AGGGAGGGGGTGCGGACGCGGGGAAGGATGAGGAGGTGGCGGCGGGGGCG GGGAGGGCGGCGGGTTCTGAGGGAATCGACGGTTCTGGCGACGGTGGCGC GGGACGGGAAGGGCAGCCCATGGAACAGGAGCAGCCGAAAACCCCAGGAG AAGAAGACGACGGCGGCTCTGAACCGGAGTCAGTCGTCCAATATCCCGAG AGGCCTCCCAATTGGATGCCCTACTATTTTCTCACCTTTTGCTTCTTTGG TAGGCCCAGCAACAGCGAGGACACGGACCTTGCAATGAAAGCTGGATCTG GCCCCTCTGGAGATTCTCGTCCGCGGAAGAAAAATAAAGCTTCTTTGGGC TCGTCCAGCGACGGGGGGAGTGGGAGCGAGGGGGGTGCATCGGACCCCGC CGCGAACTTGGGCAGGGCCGGCGTTAAGCAGTTCGTCGGTGCCGGGGAGG CGCAGAGTCGGGCCCAGGTTAAAAAGGCAATGGCAAAGGACGCAGCCCAA CAGTCGGCGGAGACCATACGAAGGGAGGGACTGGAGTTGGCAAAGCAGCA GGCCGAGATATCGAGGTCGGTGGCTAAAGCAGTGGCGCAGGTGGCTGCCG ATGTGCAAAGAGGCAGGGAGCTGAGCGAACAGGAGGCTGGCCGCAAGCGC AAGCTGGAAGAAGAGGAAGCATGCCGGAAGCGCAAGGCTCAAGCGAAGGA CGATCTGAAAGGCGAACTGGACCGTCTCGATCCAGACGACGAGGACAACA CCGCACGGCGCGCGCAAATCAAGCGGGATCTTGCTAAGCTGTACAGAACC CCTGTCAGCAAATTTACTGCTGATGCTGCCACCTCCAACCCAACGAGCAC GCCGGCCGTGGCGCCGGCCAATGCGTCAGGCTTGCCGGCGACGTCGTCGG GTGTGGCATCTCCGGTTGCGGTGACAGCGGTATCGGAGACGCCGGCAGCG GCAGCGGCGGCAATGACGACGGCTTCTCCCGCTCTGTCCGGCTTTCCTGG TGCTCCCGCTCTGCCCGGCTTTCCTGGTGCTAGTGGTGGAGTTGTCGGGG CAGTACCGAGTGCAGGTTCGGGGGACGGTGGTGGCGGGGGTGGATATTCG CCTGGTTGGATCAACATCACTAGCATATAGACCTTTTCACCCATGATGCG TGGAACCAGGTGAACGTTCGCATTATTTTTTTTTTTTGCGAAGAAGTTGG ATGCGGCCGCAGTTGTTTGTCCTTTTCTTGCAGCGTTTTTTTTTTACTCT CGGGGGCCTGCAGCAAGCAAGTGTCGTGATTGCTGTAGCTCTTTCTCTAC TTTCATTTTTTTGTTGTGCTGTGTGCTTAGCGGAAGGTGTTGTTCTGTAC GGGCAGCACCTCACCGCCACACACCCTTCGTCACAGCAACGCTCGACCTC TCTTTGTGTTTTTTTTTTGCGAGCGGCCAACGTATGGTGGGGAGCAGGTA GCACCAGCTGAAAGTGGGGGGCGGTAGGGGTGGGCATAGATTCAACCCGT GGATTCAACCCGTGGGTAATTATGGGTGGCAGCAGCAGCCGCCCTTGATT CTGTTACTTGTTTTTCCTGAGTCTGTCTGCAACCAAGAGTGGTGAGTGCT GCAAGCTGCCCTTTTTTTGTAGGGGGAGGTTTGAGCGTTTCGAGGAGGGG TGTTACGGAGTTCCGGATGCATGCGACTCCCCTCCCCCTCCCGATATCCT CACTCCACCATTCTTTTTTTTTTTTGCCGATGATCGATACTTACTTCCAG GGGTTGAGTGTTGCCCAGAAGCGGAGTCTGCACATCTCTTCCAGGAGCTG CACAAATGAATCCGGACAACATCGTTTTTGTTTTTTTTCGATCCCAACGG AAACGCTGGGCCAATTACAGCAGCTATGACACGTCACAACAACGTCTACA CTAGCTGGTGTGTCTTGCCCGCGAATGGCGGGGGGGGAGACGTGGTGCTG ATGGAGGCAGGGACCGATCACCGATGGGCAATTGTGCCATCCTACTTGGT CTACACTTTTTCCCCTATCCTATCTATCGTATCGGTGTCGCCCATCGCAA ACACCGGG back to topprotein sequence of EsuBft1180_11a-0001 >EsuBft1180_11 ID=EsuBft1180_11|Name=EsuBft1180_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=597bp
MKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLK WLSEEGDCTTPPWLTMEMMGRVAVHTCRHQWHRNAGAEEQGERETAATES LYEEPKLYKDGKKIWARYLDAFRDIRKDANPVYDKTIGDQPGGTPPSGEQ YADQLDELLQALWEYQCREKNKTVEVTAEEKEFLRARGPSAAKGKGTGSG SSAVDVDLSSTDGEVVQGTEKEGGGADAGKDEEVAAGAGRAAGSEGIDGS GDGGAGREGQPMEQEQPKTPGEEDDGGSEPESVVQYPERPPNWMPYYFLT FCFFGRPSNSEDTDLAMKAGSGPSGDSRPRKKNKASLGSSSDGGSGSEGG ASDPAANLGRAGVKQFVGAGEAQSRAQVKKAMAKDAAQQSAETIRREGLE LAKQQAEISRSVAKAVAQVAADVQRGRELSEQEAGRKRKLEEEEACRKRK AQAKDDLKGELDRLDPDDEDNTARRAQIKRDLAKLYRTPVSKFTADAATS NPTSTPAVAPANASGLPATSSGVASPVAVTAVSETPAAAAAAMTTASPAL SGFPGAPALPGFPGASGGVVGAVPSAGSGDGGGGGGYSPGWINITSI back to topmRNA from alignment at Scaffold_106:234836..239497- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1180_11a-0001 ID=EsuBft1180_11a-0001|Name=EsuBft1180_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4662bp|location=Sequence derived from alignment at Scaffold_106:234836..239497- (Ectocarpus subulatus male Bft15b) TGCTGCCTGCAAAAACGTTTCTTATAACGAATCGGTTTTTCTTTTGGAGT
TGGTGCCTCTTTGCGGCGGCGTTCGTATTTTCAAACGCGTGCACTGCTGT
TGTGCCGCACGGGCGCGGGAATTTGAACACACGCGGGCGGAACAGACGTA
GCTCTCAGACTCCCAGCACGCCGGTGTACAGACCTCCCACGCCATGCCGG
CTACGTAATCTCTGCTGCTAGACAAGATCCCCCTGTTGACGGTGGCTTTG
GAGTTGTTTAGTTCCGGAATCGGCGATGGATTGACGATGAAGGAAGTTGT
CAGGCAGCTGCAGACGGTCGCTCTCTGCTATACCGCGATGGGAGTCAAGA
GGAACGCAGGAGAGATAGACAGCAAGAAGAGAGAGGCGCTGCTACTCAAG
GCATACAAGGACGACGTCGTGCCTGGCTTTCTGAAATGGTTGTCGGAGGA
GGGTGATTGTACAACCCCGCCCTGGCTGACGATGGAGATGATGGGCCGGG
TTGCTGTACATACATGTAGGCACCAATGGCACAGGAACGCCGGTGCGGAA
GAGCAAGGGGAAAGAGAAACAGCAGCAACCGAAAGGTAAGCATCAAGGTA
CCAAGGGCGCAGGTTTCAACTGCAGAGTGCTAATCGTAGAGAACTTTACC
CTGAGTGTAACGCGCGACATTCGCGAGATCATACCGTCGTTAGCTGTACG
ACCTTCATCTGCCGCCATTTAACTGTAGGTTTACGTCACGAACGCCCCAC
CATCTGTTGCCACTTTGTTACAAGGAACCAACACCGTGAACCCAACAGCC
GTCCATGCCGCTGATGTACTCTTGCAGTCTACTGTGTGCTGAGTGAACTG
TCCTGTTAGGGTAGATTGAGCCCGAGGTTGCTCGTTCGCATCGGCGATTG
TTCGTACATCCTCCGCGTGGTGCAAGGTAAAAGTACAAGGGTCCAGCAGT
GTAGTCTATGTTGATCATTCAGCTGGGCAACGATTTGCTGAGTTGCCCGA
GGTACAACATGTGACACTCAGCCATACGAGCAGTAGGATTCCTGTCTCAG
CATTGCTGTTCGCACCGTTGCCCCACGCATTTGCCAGATGAAGAACCAAA
GCTGTACAAGGACGGGAAGAAGATCTGGGCAAGGTACCTGGATGCCTTCC
GCGACATCAGGAAGGACGCCAACCCCGTGTACGACAAGTAAGTTGCTCGG
GTCTGTTTTGAACAATATTTGTGTGTGCACATACTATCGGTAGTTGAAGG
TGTGTGTTTCATTATTTTCACCGCGATTGTGTGTAGATATGTACACTGCT
ACTCTTCCGCCGGCGTGAACACAGCAGAGCTCAGGCGCGCGGCAGACTAT
CTGCGTCGAACGATCCAGTTTTGTTGTATGCACATGACGTGGGGAAAAAT
AAGCGGGTGGTACCGCTGACAAACGCGGAAGCGACGGTGGTGGTATGCTA
CAGAAGAAGTGATGCGCTGACGCAAGTGACTGACCAGGAGTTGTTTTTTT
TCTCGCACTCGTGTGCCTCACCGTTGGGCACTTTGATTCTCCCGCATACC
CCTGAGCGAAAACTCCAACATACGCGTGCGCTGGGTTTTCGATGTGCCTG
ATATGTAAGCGCGACAAGGCGGCGATAGATACGCTGGTGGACGGGGTAGC
AGGAGGAGGGCGGATGATCAAGGCGACAATCTGTGAACATCCGTAGTTTA
GAGTAGCCTGTCGGGAAATTGTTGTGTTTTTCAAAGAGCTCCCACCCGTG
GCGTAAAACAGAAACAACTCATCTCGACATAGATTTGGTTCGCCCCCCGC
ATGATCACTCCGTCCCCAACAGTACCTCGGGCCTGCGCTTTGCCCCGCAC
TTTTGCTGTTCTACGACGATCTGAACCATATAGCTGCGGCTCAATTGACG
ACTGATTTCGTTCGGTCTCTTCGTGTCTGGTCATGGGAAGAACCCTCCAA
ACATGCTTGAAGTTTCTCCTTCTCCCCGAATAATGTAGCTCAAGGGCAAC
AAAAATGGCTCAGGATTGTTTGACTCAAGGGATCATGTCTTCAGCTGTGC
CCATGCTGTCGTAGATGCTACCCCTTCTGCCCCACACGTATCGTACAACA
ACTGCCCTTTTGTGCCGTCAGATCGACTCCATCCTTTTTGATGAACCCCC
TCCCAAGGCCAACTCGAAGCAGAGTATTAAATGTATCAATGGCGTGCTGC
CTTGGCGTGGATGCGCGGATCTCTATCTTACAGATGGTGGGGTAAGAAGT
TGGCGACCATGATCATTCTTTTTATGTCCGGTGTCGTGTTCTGAAGTTCG
TCCATGGGTTCCCGTCGGTTCGCTGATTTTCTTTCTTCGCCCAGAACCAT
CGGGGACCAACCGGGCGGGACCCCTCCATCTGGAGAGCAGTATGCCGACC
AGCTTGACGAGTTACTGCAGGCGTTGTGGGAATACCAATGCAGAGAAAAA
AATAAAACCGTGGAAGTGACCGCGGAGGAGAAGGAATTCTTGCGCGCACG
TGGCCCCTCGGCGGCGAAGGGCAAGGGTACGGGAAGCGGTTCCTCGGCCG
TCGACGTAGACCTCTCTTCCACGGACGGGGAGGTCGTACAAGGTACGGAG
AAGGAGGGAGGGGGTGCGGACGCGGGGAAGGATGAGGAGGTGGCGGCGGG
GGCGGGGAGGGCGGCGGGTTCTGAGGGAATCGACGGTTCTGGCGACGGTG
GCGCGGGACGGGAAGGGCAGCCCATGGAACAGGAGCAGCCGAAAACCCCA
GGAGAAGAAGACGACGGCGGCTCTGAACCGGAGTCAGTCGTCCAATATCC
CGAGAGGCCTCCCAATTGGATGCCCTACTATTTTCTCACCTTTTGCTTCT
TTGGTAGGCCCAGCAACAGCGAGGACACGGACCTTGCAATGAAAGCTGGA
TCTGGCCCCTCTGGAGATTCTCGTCCGCGGAAGAAAAATAAAGCTTCTTT
GGGCTCGTCCAGCGACGGGGGGAGTGGGAGCGAGGGGGGTGCATCGGACC
CCGCCGCGAACTTGGGCAGGGCCGGCGTTAAGCAGTTCGTCGGTGCCGGG
GAGGCGCAGAGTCGGGCCCAGGTTAAAAAGGCAATGGCAAAGGACGCAGC
CCAACAGTCGGCGGAGACCATACGAAGGGAGGGACTGGAGTTGGCAAAGC
AGCAGGCCGAGATATCGAGGTCGGTGGCTAAAGCAGTGGCGCAGGTGGCT
GCCGATGTGCAAAGAGGCAGGGAGCTGAGCGAACAGGAGGCTGGCCGCAA
GCGCAAGCTGGAAGAAGAGGAAGCATGCCGGAAGCGCAAGGCTCAAGCGA
AGGACGATCTGAAAGGCGAACTGGACCGTCTCGATCCAGACGACGAGGAC
AACACCGCACGGCGCGCGCAAATCAAGCGGGATCTTGCTAAGCTGTACAG
AACCCCTGTCAGCAAATTTACTGCTGATGCTGCCACCTCCAACCCAACGA
GCACGCCGGCCGTGGCGCCGGCCAATGCGTCAGGCTTGCCGGCGACGTCG
TCGGGTGTGGCATCTCCGGTTGCGGTGACAGCGGTATCGGAGACGCCGGC
AGCGGCAGCGGCGGCAATGACGACGGCTTCTCCCGCTCTGTCCGGCTTTC
CTGGTGCTCCCGCTCTGCCCGGCTTTCCTGGTGCTAGTGGTGGAGTTGTC
GGGGCAGTACCGAGTGCAGGTTCGGGGGACGGTGGTGGCGGGGGTGGATA
TTCGCCTGGTTGGATCAACATCACTAGCATATAGACCTTTTCACCCATGA
TGCGTGGAACCAGGTGAACGTTCGCATTATTTTTTTTTTTTGCGAAGAAG
TTGGATGCGGCCGCAGTTGTTTGTCCTTTTCTTGCAGCGTTTTTTTTTTA
CTCTCGGGGGCCTGCAGCAAGCAAGTGTCGTGATTGCTGTAGCTCTTTCT
CTACTTTCATTTTTTTGTTGTGCTGTGTGCTTAGCGGAAGGTGTTGTTCT
GTACGGGCAGCACCTCACCGCCACACACCCTTCGTCACAGCAACGCTCGA
CCTCTCTTTGTGTTTTTTTTTTGCGAGCGGCCAACGTATGGTGGGGAGCA
GGTAGCACCAGCTGAAAGTGGGGGGCGGTAGGGGTGGGCATAGATTCAAC
CCGTGGATTCAACCCGTGGGTAATTATGGGTGGCAGCAGCAGCCGCCCTT
GATTCTGTTACTTGTTTTTCCTGAGTCTGTCTGCAACCAAGAGTGGTGAG
TGCTGCAAGCTGCCCTTTTTTTGTAGGGGGAGGTTTGAGCGTTTCGAGGA
GGGGTGTTACGGAGTTCCGGATGCATGCGACTCCCCTCCCCCTCCCGATA
TCCTCACTCCACCATTCTTTTTTTTTTTTGCCGATGATCGATACTTACTT
CCAGGGGTTGAGTGTTGCCCAGAAGCGGAGTCTGCACATCTCTTCCAGGA
GCTGCACAAATGAATCCGGACAACATCGTTTTTGTTTTTTTTCGATCCCA
ACGGAAACGCTGGGCCAATTACAGCAGCTATGACACGTCACAACAACGTC
TACACTAGCTGGTGTGTCTTGCCCGCGAATGGCGGGGGGGGAGACGTGGT
GCTGATGGAGGCAGGGACCGATCACCGATGGGCAATTGTGCCATCCTACT
TGGTCTACACTTTTTCCCCTATCCTATCTATCGTATCGGTGTCGCCCATC
GCAAACACCGGG back to topCoding sequence (CDS) from alignment at Scaffold_106:234836..239497- >EsuBft1180_11a-0001 ID=EsuBft1180_11a-0001|Name=EsuBft1180_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1794bp|location=Sequence derived from alignment at Scaffold_106:234836..239497- (Ectocarpus subulatus male Bft15b) ATGAAGGAAGTTGTCAGGCAGCTGCAGACGGTCGCTCTCTGCTATACCGC GATGGGAGTCAAGAGGAACGCAGGAGAGATAGACAGCAAGAAGAGAGAGG CGCTGCTACTCAAGGCATACAAGGACGACGTCGTGCCTGGCTTTCTGAAA TGGTTGTCGGAGGAGGGTGATTGTACAACCCCGCCCTGGCTGACGATGGA GATGATGGGCCGGGTTGCTGTACATACATGTAGGCACCAATGGCACAGGA ACGCCGGTGCGGAAGAGCAAGGGGAAAGAGAAACAGCAGCAACCGAAAGT CTATATGAAGAACCAAAGCTGTACAAGGACGGGAAGAAGATCTGGGCAAG GTACCTGGATGCCTTCCGCGACATCAGGAAGGACGCCAACCCCGTGTACG ACAAAACCATCGGGGACCAACCGGGCGGGACCCCTCCATCTGGAGAGCAG TATGCCGACCAGCTTGACGAGTTACTGCAGGCGTTGTGGGAATACCAATG CAGAGAAAAAAATAAAACCGTGGAAGTGACCGCGGAGGAGAAGGAATTCT TGCGCGCACGTGGCCCCTCGGCGGCGAAGGGCAAGGGTACGGGAAGCGGT TCCTCGGCCGTCGACGTAGACCTCTCTTCCACGGACGGGGAGGTCGTACA AGGTACGGAGAAGGAGGGAGGGGGTGCGGACGCGGGGAAGGATGAGGAGG TGGCGGCGGGGGCGGGGAGGGCGGCGGGTTCTGAGGGAATCGACGGTTCT GGCGACGGTGGCGCGGGACGGGAAGGGCAGCCCATGGAACAGGAGCAGCC GAAAACCCCAGGAGAAGAAGACGACGGCGGCTCTGAACCGGAGTCAGTCG TCCAATATCCCGAGAGGCCTCCCAATTGGATGCCCTACTATTTTCTCACC TTTTGCTTCTTTGGTAGGCCCAGCAACAGCGAGGACACGGACCTTGCAAT GAAAGCTGGATCTGGCCCCTCTGGAGATTCTCGTCCGCGGAAGAAAAATA AAGCTTCTTTGGGCTCGTCCAGCGACGGGGGGAGTGGGAGCGAGGGGGGT GCATCGGACCCCGCCGCGAACTTGGGCAGGGCCGGCGTTAAGCAGTTCGT CGGTGCCGGGGAGGCGCAGAGTCGGGCCCAGGTTAAAAAGGCAATGGCAA AGGACGCAGCCCAACAGTCGGCGGAGACCATACGAAGGGAGGGACTGGAG TTGGCAAAGCAGCAGGCCGAGATATCGAGGTCGGTGGCTAAAGCAGTGGC GCAGGTGGCTGCCGATGTGCAAAGAGGCAGGGAGCTGAGCGAACAGGAGG CTGGCCGCAAGCGCAAGCTGGAAGAAGAGGAAGCATGCCGGAAGCGCAAG GCTCAAGCGAAGGACGATCTGAAAGGCGAACTGGACCGTCTCGATCCAGA CGACGAGGACAACACCGCACGGCGCGCGCAAATCAAGCGGGATCTTGCTA AGCTGTACAGAACCCCTGTCAGCAAATTTACTGCTGATGCTGCCACCTCC AACCCAACGAGCACGCCGGCCGTGGCGCCGGCCAATGCGTCAGGCTTGCC GGCGACGTCGTCGGGTGTGGCATCTCCGGTTGCGGTGACAGCGGTATCGG AGACGCCGGCAGCGGCAGCGGCGGCAATGACGACGGCTTCTCCCGCTCTG TCCGGCTTTCCTGGTGCTCCCGCTCTGCCCGGCTTTCCTGGTGCTAGTGG TGGAGTTGTCGGGGCAGTACCGAGTGCAGGTTCGGGGGACGGTGGTGGCG GGGGTGGATATTCGCCTGGTTGGATCAACATCACTAGCATATAG back to top
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