EsuBft1180_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1180_10a-0001
Unique Name	EsuBft1180_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:231310..234834 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FSK2
ProteomeId	EsuBft1180_10
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR006912
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	PTHR22930
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	218
Hectar predicted targeting category	chloroplast
Evalue	1.99e-112
EggNOG OGs	2E2RF@1\|root,2S9YA@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Plant transposon protein
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0016788

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_10a	EsuBft1180_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 231310..234834 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_10a-0001	EsuBft1180_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 231639..234431 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_10a-0001-exon	agat-exon-58743	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 231310..232112 +
EsuBft1180_10a-0001-exon	agat-exon-58744	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 232730..233257 +
EsuBft1180_10a-0001-exon	EsuBft1180_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 233985..234834 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_10a-0001-exon	agat-five_prime_utr-1144	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_106 231310..231638 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_10a-0001-cds	EsuBft1180_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 231639..232112 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_10a-0001-exon	agat-three_prime_utr-1746	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 234432..234834 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:231310..234834+
coding sequence from alignment at Scaffold_106:231310..234834+

spliced messenger RNA

>EsuBft1180_10a-0001 ID=EsuBft1180_10a-0001|Name=EsuBft1180_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2181bp|location=Sequence derived from alignment at Scaffold_106:231310..234834+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCGGTTTCTTATAACGTTCGGAAATGCAGTTCAAAAATGTGGATTTCCA
AATTCGGACCAAAACTGTTTCTTATAAGATCGGAAATGACACTTTTCCGC
CTGAACATTTTCGATTTCACGTTTCCAACCGGCCATGCGTTTGGAAATGA
TGAGCATTTCCGAACGTGGACGCGATCGGTTTTTTGCGTTTGGAAATGCA
CACCGGGGGCACCGCACATATGCACAACAACAGCGCAGCAACTAGACCGC
GTTCACCATCCACAGCAGCACAGCAGCGAGTACACAGCTGCTGTCCTGTG
TCTCGCGTGCACCGCGCAAACTCCCTCGCATGCTGCTACTGGGCCTGTTG
TTGGTGGTAGCCTGGGTCCGTGTGGGCACCATGTCATCGTCAGAAACGGG
TGCCGTCAACGTGCCTGCTGCGTTCAGCGTCGCGTTGGCGGCTTTCAATC
AACAGCAGCAGCGCACGCTCGTGGCATGGGATCTTGTACTCGACGATCTA
GATGAGCTCGATCCCGACTCCGAAGAAGAGGAGGAGGACAACCGTGAGAT
CAAGAGGCGACGCGTATACCCTCGTAAGGATTACAATATCTCTGGCTGGG
CGATTCAGCTGCAGGAGCTCAAGGATCTCGAGGTGGATGGAATTGTCGAC
CCCACGAGCAGGCCTGCTCGCCGCTTCCGCGAGAGCTTTCGTCTCCCTTA
CCCTTTCTTCGTGGAGCTGGTGGCCCTGGTGAAGCAGAGGGATTGGTTCC
CGACTGGGAAGCAAGATGCGTCCGGACGTCGGGGTATCCCCGTGCAATTA
AAGGTGCTGGCCTGTCTCCAGATACTAGCGAGGGGGAACTGCTTCGCAGA
CATCTACCACATGTCTTTCATTAGCATGCAGACGGCGGCAGCAACGTTTC
ACCGCTTCACCCGGTACTTCGCGAGGGAGATGTACGCGGAGCACATCTTT
CTACCGACCGGAGATTACCAAAAGAAGGTCATGACCCAGTACGATCGCCT
GGGATTTTCTGGCGCCACCGGTTCTACGGATGTTACCCACATCCCGTGGG
GTATGTGCCCTTACAACCAAGCCCGGTCTTATACGGGCAAGGAAGGGTAC
CCGACTGTCGCGTATCAAGTTACCGTAGACCACACGAAACGGGTACTTGC
AGTAACGCCGGGGTTCACGGGATCGACTAACGACAAGAGCATCATCCGGT
ACGACACGGCAGTCACCAAGATTCGGGAGGACCCCATCTACTCCGAAAAG
GAGTTCACCGTGTACGAGGCGGATGGGACACCTTACCAGCTCAAGGGGTG
CTACCTGCTCGTGGACAACGGATACCACAAGTGGGTCACCTTGATCCCTC
CCTCCAAGTACCCGATTGACCAGAACGACCTGGCCTTCTCCAAGCGGCTG
GAGAGCGTGCGGAAGGACGTGGAGTGCTTCTTCGGCATCGTTAAGGGTCG
TTTTCGGATCCTGAAGCTGAGCATCCCGTACCACAAGCAGGAAGACATTG
ACAACGTCTTTTTCACGTGCTGTATCCTGCACAACATGCTTCACAGCTAC
GACAACAAGAGCGAGATGGAGGAGGAGCCCAACTGGGCAGGGAACGCCGG
GCTCCACAACGCATGGGAGCACAACCCATCGCTGGACTTGAGCTCGGTTG
GAGCGAAGGGCTCGTCGGCCTCGACGGAGGACGTCGAGGTCGAGTCTGGG
TTCAACACACGGAGGAAGCAGTTGATCGCGAGCTTCGTCTACCGCAAGAG
CAAGAACGACATCGCGTGGCTCTCTTAGATGTTCCGTAGTTGTTAGTCAG
ACAATGCTGCAACAAGATGTCGCACTCACAGTCACACAACACGCGGCCGC
CATGCTGAGGTCATGGGGAACATATTTTTGTGTCGTCTTTAGGGAGAGGT
TAGACCTACTGTAGAGGGTGGGTGTGTGAAACAAAAGAAACCAAGCTGTC
TCTTGTTGTGCACTTTCTCGCTCGCGCTAAGTTGCTTTGGTGGATTTGAT
AGTTTGTTCCTTTATTTCCTTGGACCCAATTTGTACGATGGGGTGTTTCG
GGTCGGCCGCTCGGAGAGGGGGTAGGGAATAGGAGGTAGTAAATCACCCG
TCGAGGACTCGCGTACATGATAGCCCGTTGTCGGTTCGTTGGTCCTTCCA
GAAGTACCACGCGTGTTTGTGAACTCCCCTC

protein sequence of EsuBft1180_10a-0001

>EsuBft1180_10 ID=EsuBft1180_10|Name=EsuBft1180_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=482bp
MLLLGLLLVVAWVRVGTMSSSETGAVNVPAAFSVALAAFNQQQQRTLVAW
DLVLDDLDELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDL
EVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGR
RGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFARE
MYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARS
YTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIRE
DPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQND
LAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCIL
HNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTE
DVEVESGFNTRRKQLIASFVYRKSKNDIAWLS

mRNA from alignment at Scaffold_106:231310..234834+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1180_10a-0001 ID=EsuBft1180_10a-0001|Name=EsuBft1180_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3525bp|location=Sequence derived from alignment at Scaffold_106:231310..234834+ (Ectocarpus subulatus male Bft15b)
GGCGGTTTCTTATAACGTTCGGAAATGCAGTTCAAAAATGTGGATTTCCA
AATTCGGACCAAAACTGTTTCTTATAAGATCGGAAATGACACTTTTCCGC
CTGAACATTTTCGATTTCACGTTTCCAACCGGCCATGCGTTTGGAAATGA
TGAGCATTTCCGAACGTGGACGCGATCGGTTTTTTGCGTTTGGAAATGCA
CACCGGGGGCACCGCACATATGCACAACAACAGCGCAGCAACTAGACCGC
GTTCACCATCCACAGCAGCACAGCAGCGAGTACACAGCTGCTGTCCTGTG
TCTCGCGTGCACCGCGCAAACTCCCTCGCATGCTGCTACTGGGCCTGTTG
TTGGTGGTAGCCTGGGTCCGTGTGGGCACCATGTCATCGTCAGAAACGGG
TGCCGTCAACGTGCCTGCTGCGTTCAGCGTCGCGTTGGCGGCTTTCAATC
AACAGCAGCAGCGCACGCTCGTGGCATGGGATCTTGTACTCGACGATCTA
GATGAGCTCGATCCCGACTCCGAAGAAGAGGAGGAGGACAACCGTGAGAT
CAAGAGGCGACGCGTATACCCTCGTAAGGATTACAATATCTCTGGCTGGG
CGATTCAGCTGCAGGAGCTCAAGGATCTCGAGGTGGATGGAATTGTCGAC
CCCACGAGCAGGCCTGCTCGCCGCTTCCGCGAGAGCTTTCGTCTCCCTTA
CCCTTTCTTCGTGGAGCTGGTGGCCCTGGTGAAGCAGAGGGATTGGTTCC
CGACTGGGAAGCAAGATGCGTCCGGACGTCGGGGTATCCCCGTGCAATTA
AAGGTGAACATTTAGTGCTGCTGTGCGCACAAGCTACCGTAGGCGACACA
AGATACCACACCCCTTTGGGCCAAGGTAGCAGCAGGCGACTACGCCCTGC
ACTCGGCAGCAAGCTACAGCATCCACGCGCAAATCTTCTCGTTCGGACAA
GCAAACAGATGTCATGACTCCCGACATCGACACAGCAACGACCGCCTCAT
CTACCACGTGCTACACTCCTATTGACTTAGCCCCGTGAAGGTTTTGGCTG
TAGTTCGTGATGTCGTTGTGTTGTTGTTGCCCCGCGCTCTGCGTCCCGTA
ATTTTGCAAAGCACGAAAATTATACAGCAGCCTGTACGAACAATGATGTT
AGCACTGCTGTAGTGTAGGCTACTACTGCCGTCACTCGTGCATATGGCTG
CCAGGAACGTCATGTGCTGCGGCTGTTTTTGTCCGCGTGCCAAGCAGTTT
AAAAGCTGAGCCACAACCCCTCGTGTATGTACAACAATATTGCAGGTTGG
AAAGAAAGCCTGTCGCGCGAAGAGGTTTTTACATGGCAAGGCAGTAGATC
CTGTAGCGTTGAAACAAAATACTCCAACTGCTTGCCCCGAAACCTACGTT
GGGCGCCTGTTTTCCTACAGGTGCTGGCCTGTCTCCAGATACTAGCGAGG
GGGAACTGCTTCGCAGACATCTACCACATGTCTTTCATTAGCATGCAGAC
GGCGGCAGCAACGTTTCACCGCTTCACCCGGTACTTCGCGAGGGAGATGT
ACGCGGAGCACATCTTTCTACCGACCGGAGATTACCAAAAGAAGGTCATG
ACCCAGTACGATCGCCTGGGATTTTCTGGCGCCACCGGTTCTACGGATGT
TACCCACATCCCGTGGGGTATGTGCCCTTACAACCAAGCCCGGTCTTATA
CGGGCAAGGAAGGGTACCCGACTGTCGCGTATCAAGTTACCGTAGACCAC
ACGAAACGGGTACTTGCAGTAACGCCGGGGTTCACGGGATCGACTAACGA
CAAGAGCATCATCCGGTACGACACGGCAGTCACCAAGATTCGGGAGGACC
CCATCTACTCCGAAAAGGAGTTCACCGTGTACGAGGCGGATGGGACACCT
TACCAGCTCAAGGGGTGCTACCTGCTCGTGGACAACGGATACCACAAGGT
GAGAACTCATGGCATCGTTCAGCATGCAACTACAAGACAAGAGAAATAGA
CGGGTACAATAGAGAGAGAAAAACGTAGACGGAGGCGCGTAGGTTTTGTT
TGGTCGTCTTTTCAGTTGCTGCTGTAAAATATGTCCGGGTGTACGTGCCC
ACCGTGGTTTGTCACCTGCCAGAAAAATAATGATAAGGGTGTTCGTGTGT
TGTCGCAGATAGGAACCGTTATCCCGGATTGGGTACATGGTTGATCCACG
GGGCTCGGGGCGCTGGGGGGGTGTAGGGGTCCACGCATGCTCCCTCTCAC
TCTCTTTCTCTCTCTCGCTCTCCCATTGCGCCTCAGAGTGTTGATCACCC
CTAGCAGTACAGTGGTATATATGAGACAAACGACCCCCCCCCACCCCCCA
CCCCCAAAGTTTCAATGTGCTGGAAGTCGAGCCTTGTCTGTGCTGGAAAG
CGGTCATGTGGGGAGAACGCCGAAGCTGAAAGGCAGGTCGTGCACGTGCA
GCGGAGCCACACGCGGGGCAGAAAACGATTCTGGTTCGATGAAAAAATGC
CGAATATATGAATGTTCGTGGCAAGGTTTCCTCCTTTCGCAAACTGCGGC
GTCACAACGTCACCTTTGTAACCTCTGCATTACTAGACCCTGCCGGTTGA
CGCCCTCACTCACACCGCTTTCTCAACCCCGTATGTTTTGCGCTCTCCCC
GCCTCTCTCGCCCCACTCATGTTAGTGGGTCACCTTGATCCCTCCCTCCA
AGTACCCGATTGACCAGAACGACCTGGCCTTCTCCAAGCGGCTGGAGAGC
GTGCGGAAGGACGTGGAGTGCTTCTTCGGCATCGTTAAGGGTCGTTTTCG
GATCCTGAAGCTGAGCATCCCGTACCACAAGCAGGAAGACATTGACAACG
TCTTTTTCACGTGCTGTATCCTGCACAACATGCTTCACAGCTACGACAAC
AAGAGCGAGATGGAGGAGGAGCCCAACTGGGCAGGGAACGCCGGGCTCCA
CAACGCATGGGAGCACAACCCATCGCTGGACTTGAGCTCGGTTGGAGCGA
AGGGCTCGTCGGCCTCGACGGAGGACGTCGAGGTCGAGTCTGGGTTCAAC
ACACGGAGGAAGCAGTTGATCGCGAGCTTCGTCTACCGCAAGAGCAAGAA
CGACATCGCGTGGCTCTCTTAGATGTTCCGTAGTTGTTAGTCAGACAATG
CTGCAACAAGATGTCGCACTCACAGTCACACAACACGCGGCCGCCATGCT
GAGGTCATGGGGAACATATTTTTGTGTCGTCTTTAGGGAGAGGTTAGACC
TACTGTAGAGGGTGGGTGTGTGAAACAAAAGAAACCAAGCTGTCTCTTGT
TGTGCACTTTCTCGCTCGCGCTAAGTTGCTTTGGTGGATTTGATAGTTTG
TTCCTTTATTTCCTTGGACCCAATTTGTACGATGGGGTGTTTCGGGTCGG
CCGCTCGGAGAGGGGGTAGGGAATAGGAGGTAGTAAATCACCCGTCGAGG
ACTCGCGTACATGATAGCCCGTTGTCGGTTCGTTGGTCCTTCCAGAAGTA
CCACGCGTGTTTGTGAACTCCCCTC

Coding sequence (CDS) from alignment at Scaffold_106:231310..234834+

>EsuBft1180_10a-0001 ID=EsuBft1180_10a-0001|Name=EsuBft1180_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1449bp|location=Sequence derived from alignment at Scaffold_106:231310..234834+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTACTGGGCCTGTTGTTGGTGGTAGCCTGGGTCCGTGTGGGCAC
CATGTCATCGTCAGAAACGGGTGCCGTCAACGTGCCTGCTGCGTTCAGCG
TCGCGTTGGCGGCTTTCAATCAACAGCAGCAGCGCACGCTCGTGGCATGG
GATCTTGTACTCGACGATCTAGATGAGCTCGATCCCGACTCCGAAGAAGA
GGAGGAGGACAACCGTGAGATCAAGAGGCGACGCGTATACCCTCGTAAGG
ATTACAATATCTCTGGCTGGGCGATTCAGCTGCAGGAGCTCAAGGATCTC
GAGGTGGATGGAATTGTCGACCCCACGAGCAGGCCTGCTCGCCGCTTCCG
CGAGAGCTTTCGTCTCCCTTACCCTTTCTTCGTGGAGCTGGTGGCCCTGG
TGAAGCAGAGGGATTGGTTCCCGACTGGGAAGCAAGATGCGTCCGGACGT
CGGGGTATCCCCGTGCAATTAAAGGTGCTGGCCTGTCTCCAGATACTAGC
GAGGGGGAACTGCTTCGCAGACATCTACCACATGTCTTTCATTAGCATGC
AGACGGCGGCAGCAACGTTTCACCGCTTCACCCGGTACTTCGCGAGGGAG
ATGTACGCGGAGCACATCTTTCTACCGACCGGAGATTACCAAAAGAAGGT
CATGACCCAGTACGATCGCCTGGGATTTTCTGGCGCCACCGGTTCTACGG
ATGTTACCCACATCCCGTGGGGTATGTGCCCTTACAACCAAGCCCGGTCT
TATACGGGCAAGGAAGGGTACCCGACTGTCGCGTATCAAGTTACCGTAGA
CCACACGAAACGGGTACTTGCAGTAACGCCGGGGTTCACGGGATCGACTA
ACGACAAGAGCATCATCCGGTACGACACGGCAGTCACCAAGATTCGGGAG
GACCCCATCTACTCCGAAAAGGAGTTCACCGTGTACGAGGCGGATGGGAC
ACCTTACCAGCTCAAGGGGTGCTACCTGCTCGTGGACAACGGATACCACA
AGTGGGTCACCTTGATCCCTCCCTCCAAGTACCCGATTGACCAGAACGAC
CTGGCCTTCTCCAAGCGGCTGGAGAGCGTGCGGAAGGACGTGGAGTGCTT
CTTCGGCATCGTTAAGGGTCGTTTTCGGATCCTGAAGCTGAGCATCCCGT
ACCACAAGCAGGAAGACATTGACAACGTCTTTTTCACGTGCTGTATCCTG
CACAACATGCTTCACAGCTACGACAACAAGAGCGAGATGGAGGAGGAGCC
CAACTGGGCAGGGAACGCCGGGCTCCACAACGCATGGGAGCACAACCCAT
CGCTGGACTTGAGCTCGGTTGGAGCGAAGGGCTCGTCGGCCTCGACGGAG
GACGTCGAGGTCGAGTCTGGGTTCAACACACGGAGGAAGCAGTTGATCGC
GAGCTTCGTCTACCGCAAGAGCAAGAACGACATCGCGTGGCTCTCTTAG