Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FSK2 |
| ProteomeId | EsuBft1180_10 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR006912 |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | PTHR22930 |
| Protein domains | SignalP-TM |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 218 |
| Hectar predicted targeting category | chloroplast |
| Evalue | 1.99e-112 |
| EggNOG OGs | 2E2RF@1|root,2S9YA@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Plant transposon protein |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0016788 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1180_10a-0001 ID=EsuBft1180_10a-0001|Name=EsuBft1180_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2181bp|location=Sequence derived from alignment at Scaffold_106:231310..234834+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GGCGGTTTCTTATAACGTTCGGAAATGCAGTTCAAAAATGTGGATTTCCA
AATTCGGACCAAAACTGTTTCTTATAAGATCGGAAATGACACTTTTCCGC
CTGAACATTTTCGATTTCACGTTTCCAACCGGCCATGCGTTTGGAAATGA
TGAGCATTTCCGAACGTGGACGCGATCGGTTTTTTGCGTTTGGAAATGCA
CACCGGGGGCACCGCACATATGCACAACAACAGCGCAGCAACTAGACCGC
GTTCACCATCCACAGCAGCACAGCAGCGAGTACACAGCTGCTGTCCTGTG
TCTCGCGTGCACCGCGCAAACTCCCTCGCATGCTGCTACTGGGCCTGTTG
TTGGTGGTAGCCTGGGTCCGTGTGGGCACCATGTCATCGTCAGAAACGGG
TGCCGTCAACGTGCCTGCTGCGTTCAGCGTCGCGTTGGCGGCTTTCAATC
AACAGCAGCAGCGCACGCTCGTGGCATGGGATCTTGTACTCGACGATCTA
GATGAGCTCGATCCCGACTCCGAAGAAGAGGAGGAGGACAACCGTGAGAT
CAAGAGGCGACGCGTATACCCTCGTAAGGATTACAATATCTCTGGCTGGG
CGATTCAGCTGCAGGAGCTCAAGGATCTCGAGGTGGATGGAATTGTCGAC
CCCACGAGCAGGCCTGCTCGCCGCTTCCGCGAGAGCTTTCGTCTCCCTTA
CCCTTTCTTCGTGGAGCTGGTGGCCCTGGTGAAGCAGAGGGATTGGTTCC
CGACTGGGAAGCAAGATGCGTCCGGACGTCGGGGTATCCCCGTGCAATTA
AAGGTGCTGGCCTGTCTCCAGATACTAGCGAGGGGGAACTGCTTCGCAGA
CATCTACCACATGTCTTTCATTAGCATGCAGACGGCGGCAGCAACGTTTC
ACCGCTTCACCCGGTACTTCGCGAGGGAGATGTACGCGGAGCACATCTTT
CTACCGACCGGAGATTACCAAAAGAAGGTCATGACCCAGTACGATCGCCT
GGGATTTTCTGGCGCCACCGGTTCTACGGATGTTACCCACATCCCGTGGG
GTATGTGCCCTTACAACCAAGCCCGGTCTTATACGGGCAAGGAAGGGTAC
CCGACTGTCGCGTATCAAGTTACCGTAGACCACACGAAACGGGTACTTGC
AGTAACGCCGGGGTTCACGGGATCGACTAACGACAAGAGCATCATCCGGT
ACGACACGGCAGTCACCAAGATTCGGGAGGACCCCATCTACTCCGAAAAG
GAGTTCACCGTGTACGAGGCGGATGGGACACCTTACCAGCTCAAGGGGTG
CTACCTGCTCGTGGACAACGGATACCACAAGTGGGTCACCTTGATCCCTC
CCTCCAAGTACCCGATTGACCAGAACGACCTGGCCTTCTCCAAGCGGCTG
GAGAGCGTGCGGAAGGACGTGGAGTGCTTCTTCGGCATCGTTAAGGGTCG
TTTTCGGATCCTGAAGCTGAGCATCCCGTACCACAAGCAGGAAGACATTG
ACAACGTCTTTTTCACGTGCTGTATCCTGCACAACATGCTTCACAGCTAC
GACAACAAGAGCGAGATGGAGGAGGAGCCCAACTGGGCAGGGAACGCCGG
GCTCCACAACGCATGGGAGCACAACCCATCGCTGGACTTGAGCTCGGTTG
GAGCGAAGGGCTCGTCGGCCTCGACGGAGGACGTCGAGGTCGAGTCTGGG
TTCAACACACGGAGGAAGCAGTTGATCGCGAGCTTCGTCTACCGCAAGAG
CAAGAACGACATCGCGTGGCTCTCTTAGATGTTCCGTAGTTGTTAGTCAG
ACAATGCTGCAACAAGATGTCGCACTCACAGTCACACAACACGCGGCCGC
CATGCTGAGGTCATGGGGAACATATTTTTGTGTCGTCTTTAGGGAGAGGT
TAGACCTACTGTAGAGGGTGGGTGTGTGAAACAAAAGAAACCAAGCTGTC
TCTTGTTGTGCACTTTCTCGCTCGCGCTAAGTTGCTTTGGTGGATTTGAT
AGTTTGTTCCTTTATTTCCTTGGACCCAATTTGTACGATGGGGTGTTTCG
GGTCGGCCGCTCGGAGAGGGGGTAGGGAATAGGAGGTAGTAAATCACCCG
TCGAGGACTCGCGTACATGATAGCCCGTTGTCGGTTCGTTGGTCCTTCCA
GAAGTACCACGCGTGTTTGTGAACTCCCCTC back to topprotein sequence of EsuBft1180_10a-0001 >EsuBft1180_10 ID=EsuBft1180_10|Name=EsuBft1180_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=482bp
MLLLGLLLVVAWVRVGTMSSSETGAVNVPAAFSVALAAFNQQQQRTLVAW
DLVLDDLDELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDL
EVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGR
RGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFARE
MYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARS
YTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIRE
DPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQND
LAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCIL
HNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTE
DVEVESGFNTRRKQLIASFVYRKSKNDIAWLS back to topmRNA from alignment at Scaffold_106:231310..234834+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1180_10a-0001 ID=EsuBft1180_10a-0001|Name=EsuBft1180_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3525bp|location=Sequence derived from alignment at Scaffold_106:231310..234834+ (Ectocarpus subulatus male Bft15b)
GGCGGTTTCTTATAACGTTCGGAAATGCAGTTCAAAAATGTGGATTTCCA
AATTCGGACCAAAACTGTTTCTTATAAGATCGGAAATGACACTTTTCCGC
CTGAACATTTTCGATTTCACGTTTCCAACCGGCCATGCGTTTGGAAATGA
TGAGCATTTCCGAACGTGGACGCGATCGGTTTTTTGCGTTTGGAAATGCA
CACCGGGGGCACCGCACATATGCACAACAACAGCGCAGCAACTAGACCGC
GTTCACCATCCACAGCAGCACAGCAGCGAGTACACAGCTGCTGTCCTGTG
TCTCGCGTGCACCGCGCAAACTCCCTCGCATGCTGCTACTGGGCCTGTTG
TTGGTGGTAGCCTGGGTCCGTGTGGGCACCATGTCATCGTCAGAAACGGG
TGCCGTCAACGTGCCTGCTGCGTTCAGCGTCGCGTTGGCGGCTTTCAATC
AACAGCAGCAGCGCACGCTCGTGGCATGGGATCTTGTACTCGACGATCTA
GATGAGCTCGATCCCGACTCCGAAGAAGAGGAGGAGGACAACCGTGAGAT
CAAGAGGCGACGCGTATACCCTCGTAAGGATTACAATATCTCTGGCTGGG
CGATTCAGCTGCAGGAGCTCAAGGATCTCGAGGTGGATGGAATTGTCGAC
CCCACGAGCAGGCCTGCTCGCCGCTTCCGCGAGAGCTTTCGTCTCCCTTA
CCCTTTCTTCGTGGAGCTGGTGGCCCTGGTGAAGCAGAGGGATTGGTTCC
CGACTGGGAAGCAAGATGCGTCCGGACGTCGGGGTATCCCCGTGCAATTA
AAGGTGAACATTTAGTGCTGCTGTGCGCACAAGCTACCGTAGGCGACACA
AGATACCACACCCCTTTGGGCCAAGGTAGCAGCAGGCGACTACGCCCTGC
ACTCGGCAGCAAGCTACAGCATCCACGCGCAAATCTTCTCGTTCGGACAA
GCAAACAGATGTCATGACTCCCGACATCGACACAGCAACGACCGCCTCAT
CTACCACGTGCTACACTCCTATTGACTTAGCCCCGTGAAGGTTTTGGCTG
TAGTTCGTGATGTCGTTGTGTTGTTGTTGCCCCGCGCTCTGCGTCCCGTA
ATTTTGCAAAGCACGAAAATTATACAGCAGCCTGTACGAACAATGATGTT
AGCACTGCTGTAGTGTAGGCTACTACTGCCGTCACTCGTGCATATGGCTG
CCAGGAACGTCATGTGCTGCGGCTGTTTTTGTCCGCGTGCCAAGCAGTTT
AAAAGCTGAGCCACAACCCCTCGTGTATGTACAACAATATTGCAGGTTGG
AAAGAAAGCCTGTCGCGCGAAGAGGTTTTTACATGGCAAGGCAGTAGATC
CTGTAGCGTTGAAACAAAATACTCCAACTGCTTGCCCCGAAACCTACGTT
GGGCGCCTGTTTTCCTACAGGTGCTGGCCTGTCTCCAGATACTAGCGAGG
GGGAACTGCTTCGCAGACATCTACCACATGTCTTTCATTAGCATGCAGAC
GGCGGCAGCAACGTTTCACCGCTTCACCCGGTACTTCGCGAGGGAGATGT
ACGCGGAGCACATCTTTCTACCGACCGGAGATTACCAAAAGAAGGTCATG
ACCCAGTACGATCGCCTGGGATTTTCTGGCGCCACCGGTTCTACGGATGT
TACCCACATCCCGTGGGGTATGTGCCCTTACAACCAAGCCCGGTCTTATA
CGGGCAAGGAAGGGTACCCGACTGTCGCGTATCAAGTTACCGTAGACCAC
ACGAAACGGGTACTTGCAGTAACGCCGGGGTTCACGGGATCGACTAACGA
CAAGAGCATCATCCGGTACGACACGGCAGTCACCAAGATTCGGGAGGACC
CCATCTACTCCGAAAAGGAGTTCACCGTGTACGAGGCGGATGGGACACCT
TACCAGCTCAAGGGGTGCTACCTGCTCGTGGACAACGGATACCACAAGGT
GAGAACTCATGGCATCGTTCAGCATGCAACTACAAGACAAGAGAAATAGA
CGGGTACAATAGAGAGAGAAAAACGTAGACGGAGGCGCGTAGGTTTTGTT
TGGTCGTCTTTTCAGTTGCTGCTGTAAAATATGTCCGGGTGTACGTGCCC
ACCGTGGTTTGTCACCTGCCAGAAAAATAATGATAAGGGTGTTCGTGTGT
TGTCGCAGATAGGAACCGTTATCCCGGATTGGGTACATGGTTGATCCACG
GGGCTCGGGGCGCTGGGGGGGTGTAGGGGTCCACGCATGCTCCCTCTCAC
TCTCTTTCTCTCTCTCGCTCTCCCATTGCGCCTCAGAGTGTTGATCACCC
CTAGCAGTACAGTGGTATATATGAGACAAACGACCCCCCCCCACCCCCCA
CCCCCAAAGTTTCAATGTGCTGGAAGTCGAGCCTTGTCTGTGCTGGAAAG
CGGTCATGTGGGGAGAACGCCGAAGCTGAAAGGCAGGTCGTGCACGTGCA
GCGGAGCCACACGCGGGGCAGAAAACGATTCTGGTTCGATGAAAAAATGC
CGAATATATGAATGTTCGTGGCAAGGTTTCCTCCTTTCGCAAACTGCGGC
GTCACAACGTCACCTTTGTAACCTCTGCATTACTAGACCCTGCCGGTTGA
CGCCCTCACTCACACCGCTTTCTCAACCCCGTATGTTTTGCGCTCTCCCC
GCCTCTCTCGCCCCACTCATGTTAGTGGGTCACCTTGATCCCTCCCTCCA
AGTACCCGATTGACCAGAACGACCTGGCCTTCTCCAAGCGGCTGGAGAGC
GTGCGGAAGGACGTGGAGTGCTTCTTCGGCATCGTTAAGGGTCGTTTTCG
GATCCTGAAGCTGAGCATCCCGTACCACAAGCAGGAAGACATTGACAACG
TCTTTTTCACGTGCTGTATCCTGCACAACATGCTTCACAGCTACGACAAC
AAGAGCGAGATGGAGGAGGAGCCCAACTGGGCAGGGAACGCCGGGCTCCA
CAACGCATGGGAGCACAACCCATCGCTGGACTTGAGCTCGGTTGGAGCGA
AGGGCTCGTCGGCCTCGACGGAGGACGTCGAGGTCGAGTCTGGGTTCAAC
ACACGGAGGAAGCAGTTGATCGCGAGCTTCGTCTACCGCAAGAGCAAGAA
CGACATCGCGTGGCTCTCTTAGATGTTCCGTAGTTGTTAGTCAGACAATG
CTGCAACAAGATGTCGCACTCACAGTCACACAACACGCGGCCGCCATGCT
GAGGTCATGGGGAACATATTTTTGTGTCGTCTTTAGGGAGAGGTTAGACC
TACTGTAGAGGGTGGGTGTGTGAAACAAAAGAAACCAAGCTGTCTCTTGT
TGTGCACTTTCTCGCTCGCGCTAAGTTGCTTTGGTGGATTTGATAGTTTG
TTCCTTTATTTCCTTGGACCCAATTTGTACGATGGGGTGTTTCGGGTCGG
CCGCTCGGAGAGGGGGTAGGGAATAGGAGGTAGTAAATCACCCGTCGAGG
ACTCGCGTACATGATAGCCCGTTGTCGGTTCGTTGGTCCTTCCAGAAGTA
CCACGCGTGTTTGTGAACTCCCCTC back to topCoding sequence (CDS) from alignment at Scaffold_106:231310..234834+ >EsuBft1180_10a-0001 ID=EsuBft1180_10a-0001|Name=EsuBft1180_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1449bp|location=Sequence derived from alignment at Scaffold_106:231310..234834+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTACTGGGCCTGTTGTTGGTGGTAGCCTGGGTCCGTGTGGGCAC
CATGTCATCGTCAGAAACGGGTGCCGTCAACGTGCCTGCTGCGTTCAGCG
TCGCGTTGGCGGCTTTCAATCAACAGCAGCAGCGCACGCTCGTGGCATGG
GATCTTGTACTCGACGATCTAGATGAGCTCGATCCCGACTCCGAAGAAGA
GGAGGAGGACAACCGTGAGATCAAGAGGCGACGCGTATACCCTCGTAAGG
ATTACAATATCTCTGGCTGGGCGATTCAGCTGCAGGAGCTCAAGGATCTC
GAGGTGGATGGAATTGTCGACCCCACGAGCAGGCCTGCTCGCCGCTTCCG
CGAGAGCTTTCGTCTCCCTTACCCTTTCTTCGTGGAGCTGGTGGCCCTGG
TGAAGCAGAGGGATTGGTTCCCGACTGGGAAGCAAGATGCGTCCGGACGT
CGGGGTATCCCCGTGCAATTAAAGGTGCTGGCCTGTCTCCAGATACTAGC
GAGGGGGAACTGCTTCGCAGACATCTACCACATGTCTTTCATTAGCATGC
AGACGGCGGCAGCAACGTTTCACCGCTTCACCCGGTACTTCGCGAGGGAG
ATGTACGCGGAGCACATCTTTCTACCGACCGGAGATTACCAAAAGAAGGT
CATGACCCAGTACGATCGCCTGGGATTTTCTGGCGCCACCGGTTCTACGG
ATGTTACCCACATCCCGTGGGGTATGTGCCCTTACAACCAAGCCCGGTCT
TATACGGGCAAGGAAGGGTACCCGACTGTCGCGTATCAAGTTACCGTAGA
CCACACGAAACGGGTACTTGCAGTAACGCCGGGGTTCACGGGATCGACTA
ACGACAAGAGCATCATCCGGTACGACACGGCAGTCACCAAGATTCGGGAG
GACCCCATCTACTCCGAAAAGGAGTTCACCGTGTACGAGGCGGATGGGAC
ACCTTACCAGCTCAAGGGGTGCTACCTGCTCGTGGACAACGGATACCACA
AGTGGGTCACCTTGATCCCTCCCTCCAAGTACCCGATTGACCAGAACGAC
CTGGCCTTCTCCAAGCGGCTGGAGAGCGTGCGGAAGGACGTGGAGTGCTT
CTTCGGCATCGTTAAGGGTCGTTTTCGGATCCTGAAGCTGAGCATCCCGT
ACCACAAGCAGGAAGACATTGACAACGTCTTTTTCACGTGCTGTATCCTG
CACAACATGCTTCACAGCTACGACAACAAGAGCGAGATGGAGGAGGAGCC
CAACTGGGCAGGGAACGCCGGGCTCCACAACGCATGGGAGCACAACCCAT
CGCTGGACTTGAGCTCGGTTGGAGCGAAGGGCTCGTCGGCCTCGACGGAG
GACGTCGAGGTCGAGTCTGGGTTCAACACACGGAGGAAGCAGTTGATCGC
GAGCTTCGTCTACCGCAAGAGCAAGAACGACATCGCGTGGCTCTCTTAG back to top
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