EsuBft1178_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1178_8a-0001
Unique Name	EsuBft1178_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_68	contig	Scaffold_68:103071..105773 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1178_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	254
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1178_8a	EsuBft1178_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_68 103071..105773 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1178_8a-0001	EsuBft1178_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_68 103128..103484 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1178_8a-0001-exon	agat-exon-31301	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 103071..103683 +
EsuBft1178_8a-0001-exon	EsuBft1178_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 103842..105773 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1178_8a-0001-exon	agat-five_prime_utr-1129	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_68 103071..103127 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1178_8a-0001-cds	EsuBft1178_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_68 103128..103484 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1178_8a-0001-exon	agat-three_prime_utr-1707	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_68 103485..103683 +
EsuBft1178_8a-0001-exon	agat-three_prime_utr-1708	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_68 103842..105773 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_68:103071..105773+
coding sequence from alignment at Scaffold_68:103071..105773+

spliced messenger RNA

>EsuBft1178_8a-0001 ID=EsuBft1178_8a-0001|Name=EsuBft1178_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2545bp|location=Sequence derived from alignment at Scaffold_68:103071..105773+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTAAACCCACCATAGCCCAAGAAAGGGGCCGAGCAGTACCCGGGGTGGAG
GCAGGATATGATCGTGCAGGCAGGCATTCTCGACATAGGCGATGTGTTCT
CCGGCGGCGGGGTGCTGCCGGACATCAACGAGCCACAGACCGCCCTTCTC
GAGCAGGGGTTTTCGTATGCAGCAATCCGCAAGACGTATCTGGCGTGGAA
TTTCCTCTCTGCCGCCTCGACTAGTGAGACGGACAAAGCTATCCTCCGTC
GTTGCACGAACCCAAGGGAAGCCCTGCGGCAACTAGATGCGGCATACCTG
CAGGAGACACAGGGTGCACAGCAGCAGCTTTTCAGAGAGCTCCGGCAGTA
CCAGACTCCTCGGAAGGAGAACCCCGTCGCCAGTTTGAACAAGCTCATGG
GTATGGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCATGC
CAACTTCGCGGTGGTTGGCCGTAGGCCCTCAGCGCCGCTGATTTGCGGTG
GGGGGGCCGGACGAAGTCGCGCGGAGGTGGCGCGCAAGCACAGCATGGAC
AGAGGGGCCATGAAAGTCGCACAATTGACGGTGCGCACTCCATCTGCGGG
ATAGGAGGCGGTGGAAAGCAGGGACGGTAGAGTGACCGTTGGGCAGAATA
GCCGGAGACACCCTACCATGGATTGACCGCGCGACGGCGTGTGGGGGGTG
GGCGCCGCACTCGCTTGACGCGGGCGGTGTTTTCTCTAAGTTGATCACAG
GCACGGCAGAGTGGCCGTGCACGCCCTACCACGGTTGACACGCGCGACGG
CGCGTCGGGGGGTGGGTGCCGCATCACGCGTGAAGCGGGCGGCATTTTTC
GACCACAGCACGGACGGAGGGGCCGTGGCTGTCATGCCTTGCCGTTCGGA
GCCGGGGGGGTAGCACTTGAAGTCGCGCGGAGATGGCGCGCAACCCAGCA
CGGACGGACGGGCCGTGGCTGTTCTGCCTCGTCGTTGGAGCGGGGGGGGG
CAGCATGTTTTGTCGCGCGGAGGTGGCGCGCAACCATCAGCCGGAGGTGG
GCATTTNGAGGGGCCGTGGCTGTCCTGCCTTGCCGTTTGGAGCCGGGGGG
GTAGCACTTGAAGTCGCGCGGAGATGGCGCGCAACCCAGCACGGACGGAC
GGGCCGTGGCTGTTCTGCATCGTCGTTGGAGCGGGGGAGGGCAGCATGTT
TTGTCGTGCGGAGGTGGCGCGCAACCATCAGCCGGAGGTGGGCATTTGGG
GTGGGGCACAGCGATATGGCGGTGTCATCAAAGTCGCGTGGAGAGTCGCC
GCGCGCATTTCATAAGCCGGGAAGGGACGATGGAGATCGGGATCGGCAGG
ATCGACTTGTGGACGATCGAGGGCGCGCTTCATCTTCACGATTGGAACTG
GTGGAGTGGACGGGCAAGCTTGATAATTTTTTCTTGTGTTTTTCTTTTTT
CGACGCCAGTTTACGGGTGTCGGTGAAATCCGAATTTTTCAAGCGTTCTT
GATCTTGTTTCGTTTTTTTTTTTTCGTTTCTTTTGACGGTAATTTTTTTG
GTTGCCGAATCCAGTGGTAATTCTCACGTATACGTGTTGTCGTTATACAT
CGTGATGTACGCTTTGCGCTTCTTGACCATTTTTTTTGTTGTGTCGAGGG
CTCATATCGGTGACAGGTGTGTCGGTGATGGTAGCAAAGTGGGGGGGGAT
GAAAACGTGCACGTTGGTAGAATTTGCCACCATATTTGATGCGTAGTTCA
TGAAGGTTCAATCGCAAGTTGATGCATTCTTGGTTGAAGGAAGATCGAGG
TTTTTGACTGTTTGCAGATTGCGGGCCTTGTTTGAAGGAGGCTTGACGTT
TTGTTTCTGAAGATGGGTTTCGTGGAAAACCGGTTGTGTTTGATTTGTTC
TTCAGCAGAAACAGGATGTTTGTGGTTTTGATTTGGTGGTGGATCGCGCT
TGGTTGATCCCAAAAGAGGGAGAACGTACCTGTCTGATGAAGTTTTGATG
CGGAATGCAGTTAGGCAGGGAGGGCGTTGCCCGTACATGTGTGTGATACA
CGAATCAGTGTTGGTGCTGCACAAGGATCTTGTTTCATCATTCAAGAAGG
ATTTTGCCAGGAGCGTACCTCGTGGTTGGAGAATAGAGCGTTGCTTAGAA
AATCGTAATCCGCATGTTTGGTGTAAGTCGCTTTTGTTTTGATCTTGCAG
TACAGCCGTTGGAATCATAGATGACATGGACGGTTCGTTTGATTTTGTTT
GAGGCGTTGGACTTCGATGGGTTTTGATCCGGCGGCCGGGTTTCCCCTTG
GTTCTATTTTCTTCGTTGTGTTTCAGCTATTTTGTCATAGTTCCGACGCA
CGAGTGGTTTTTCGATGGTGAAAAGAACCAGGGAGGGTGTTCGTA

protein sequence of EsuBft1178_8a-0001

>EsuBft1178_8 ID=EsuBft1178_8|Name=EsuBft1178_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=119bp
MIVQAGILDIGDVFSGGGVLPDINEPQTALLEQGFSYAAIRKTYLAWNFL
SAASTSETDKAILRRCTNPREALRQLDAAYLQETQGAQQQLFRELRQYQT
PRKENPVASLNKLMGMAXX

mRNA from alignment at Scaffold_68:103071..105773+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1178_8a-0001 ID=EsuBft1178_8a-0001|Name=EsuBft1178_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2703bp|location=Sequence derived from alignment at Scaffold_68:103071..105773+ (Ectocarpus subulatus male Bft15b)
GTAAACCCACCATAGCCCAAGAAAGGGGCCGAGCAGTACCCGGGGTGGAG
GCAGGATATGATCGTGCAGGCAGGCATTCTCGACATAGGCGATGTGTTCT
CCGGCGGCGGGGTGCTGCCGGACATCAACGAGCCACAGACCGCCCTTCTC
GAGCAGGGGTTTTCGTATGCAGCAATCCGCAAGACGTATCTGGCGTGGAA
TTTCCTCTCTGCCGCCTCGACTAGTGAGACGGACAAAGCTATCCTCCGTC
GTTGCACGAACCCAAGGGAAGCCCTGCGGCAACTAGATGCGGCATACCTG
CAGGAGACACAGGGTGCACAGCAGCAGCTTTTCAGAGAGCTCCGGCAGTA
CCAGACTCCTCGGAAGGAGAACCCCGTCGCCAGTTTGAACAAGCTCATGG
GTATGGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCATGC
CAACTTCGCGGTGGTGAGTTTCGAAGAGCAGTACGACCGCGCGGAAGAAC
TGTGCAACATGGATCCTAGTTGGGAGAAGCTGGCCGAAGACGAGAAGGAA
GCAAAGGTGCAGGAAGTGATAACTGAAAGTTTCTAGGGTGGACAGGTGGT
GTTGCTAATACGGTACGGCAGGTTGGCCGTAGGCCCTCAGCGCCGCTGAT
TTGCGGTGGGGGGGCCGGACGAAGTCGCGCGGAGGTGGCGCGCAAGCACA
GCATGGACAGAGGGGCCATGAAAGTCGCACAATTGACGGTGCGCACTCCA
TCTGCGGGATAGGAGGCGGTGGAAAGCAGGGACGGTAGAGTGACCGTTGG
GCAGAATAGCCGGAGACACCCTACCATGGATTGACCGCGCGACGGCGTGT
GGGGGGTGGGCGCCGCACTCGCTTGACGCGGGCGGTGTTTTCTCTAAGTT
GATCACAGGCACGGCAGAGTGGCCGTGCACGCCCTACCACGGTTGACACG
CGCGACGGCGCGTCGGGGGGTGGGTGCCGCATCACGCGTGAAGCGGGCGG
CATTTTTCGACCACAGCACGGACGGAGGGGCCGTGGCTGTCATGCCTTGC
CGTTCGGAGCCGGGGGGGTAGCACTTGAAGTCGCGCGGAGATGGCGCGCA
ACCCAGCACGGACGGACGGGCCGTGGCTGTTCTGCCTCGTCGTTGGAGCG
GGGGGGGGCAGCATGTTTTGTCGCGCGGAGGTGGCGCGCAACCATCAGCC
GGAGGTGGGCATTTNGAGGGGCCGTGGCTGTCCTGCCTTGCCGTTTGGAG
CCGGGGGGGTAGCACTTGAAGTCGCGCGGAGATGGCGCGCAACCCAGCAC
GGACGGACGGGCCGTGGCTGTTCTGCATCGTCGTTGGAGCGGGGGAGGGC
AGCATGTTTTGTCGTGCGGAGGTGGCGCGCAACCATCAGCCGGAGGTGGG
CATTTGGGGTGGGGCACAGCGATATGGCGGTGTCATCAAAGTCGCGTGGA
GAGTCGCCGCGCGCATTTCATAAGCCGGGAAGGGACGATGGAGATCGGGA
TCGGCAGGATCGACTTGTGGACGATCGAGGGCGCGCTTCATCTTCACGAT
TGGAACTGGTGGAGTGGACGGGCAAGCTTGATAATTTTTTCTTGTGTTTT
TCTTTTTTCGACGCCAGTTTACGGGTGTCGGTGAAATCCGAATTTTTCAA
GCGTTCTTGATCTTGTTTCGTTTTTTTTTTTTCGTTTCTTTTGACGGTAA
TTTTTTTGGTTGCCGAATCCAGTGGTAATTCTCACGTATACGTGTTGTCG
TTATACATCGTGATGTACGCTTTGCGCTTCTTGACCATTTTTTTTGTTGT
GTCGAGGGCTCATATCGGTGACAGGTGTGTCGGTGATGGTAGCAAAGTGG
GGGGGGATGAAAACGTGCACGTTGGTAGAATTTGCCACCATATTTGATGC
GTAGTTCATGAAGGTTCAATCGCAAGTTGATGCATTCTTGGTTGAAGGAA
GATCGAGGTTTTTGACTGTTTGCAGATTGCGGGCCTTGTTTGAAGGAGGC
TTGACGTTTTGTTTCTGAAGATGGGTTTCGTGGAAAACCGGTTGTGTTTG
ATTTGTTCTTCAGCAGAAACAGGATGTTTGTGGTTTTGATTTGGTGGTGG
ATCGCGCTTGGTTGATCCCAAAAGAGGGAGAACGTACCTGTCTGATGAAG
TTTTGATGCGGAATGCAGTTAGGCAGGGAGGGCGTTGCCCGTACATGTGT
GTGATACACGAATCAGTGTTGGTGCTGCACAAGGATCTTGTTTCATCATT
CAAGAAGGATTTTGCCAGGAGCGTACCTCGTGGTTGGAGAATAGAGCGTT
GCTTAGAAAATCGTAATCCGCATGTTTGGTGTAAGTCGCTTTTGTTTTGA
TCTTGCAGTACAGCCGTTGGAATCATAGATGACATGGACGGTTCGTTTGA
TTTTGTTTGAGGCGTTGGACTTCGATGGGTTTTGATCCGGCGGCCGGGTT
TCCCCTTGGTTCTATTTTCTTCGTTGTGTTTCAGCTATTTTGTCATAGTT
CCGACGCACGAGTGGTTTTTCGATGGTGAAAAGAACCAGGGAGGGTGTTC
GTA

Coding sequence (CDS) from alignment at Scaffold_68:103071..105773+

>EsuBft1178_8a-0001 ID=EsuBft1178_8a-0001|Name=EsuBft1178_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=357bp|location=Sequence derived from alignment at Scaffold_68:103071..105773+ (Ectocarpus subulatus male Bft15b)
ATGATCGTGCAGGCAGGCATTCTCGACATAGGCGATGTGTTCTCCGGCGG
CGGGGTGCTGCCGGACATCAACGAGCCACAGACCGCCCTTCTCGAGCAGG
GGTTTTCGTATGCAGCAATCCGCAAGACGTATCTGGCGTGGAATTTCCTC
TCTGCCGCCTCGACTAGTGAGACGGACAAAGCTATCCTCCGTCGTTGCAC
GAACCCAAGGGAAGCCCTGCGGCAACTAGATGCGGCATACCTGCAGGAGA
CACAGGGTGCACAGCAGCAGCTTTTCAGAGAGCTCCGGCAGTACCAGACT
CCTCGGAAGGAGAACCCCGTCGCCAGTTTGAACAAGCTCATGGGTATGGC
CAANNNN