EsuBft1178_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1178_6a-0001
Unique NameEsuBft1178_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:130371..132924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6669.EFX80110
ProteomeIdEsuBft1178_6
Protein domainsIPR004875
Protein domainsPTHR19303
Ownerapollo_admin@sb-roscoff.fr
Notejerky protein homolog-like os:homo sapiens gn:jrkl pe:2 sv:2 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1641
Hectar predicted targeting categoryother localisation
Evalue6.48e-29
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,3985B@33154|Opisthokonta,3CCE5@33208|Metazoa,3DTQE@33213|Bilateria,422V0@6656|Arthropoda
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePDC2
GOsGO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006109,GO:0006140,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0019219,GO:0019220,GO:0019222,GO:0030656,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0042762,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043465,GO:0043467,GO:0043470,GO:0043471,GO:0043565,GO:0044212,GO:0044424,GO:0044464,GO:0045893,GO:0045913,GO:0045935,GO:0045937,GO:0045944,GO:0045981,GO:0046136,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051176,GO:0051193,GO:0051194,GO:0051196,GO:0051197,GO:0051252,GO:0051254,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0070623,GO:0080090,GO:0090180,GO:0097159,GO:1900542,GO:1900544,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1903578,GO:1903580,GO:1990837,GO:2000112,GO:2001141,GO:2001154,GO:2001172
DescriptionDDE superfamily endonuclease
COG categoryBD
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_6aEsuBft1178_6aEctocarpus subulatus male Bft15bgeneScaffold_68 130371..132924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_6a-0001EsuBft1178_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 130371..132804 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_6a-0001-exonagat-exon-31299Ectocarpus subulatus male Bft15bexonScaffold_68 130371..130880 -
EsuBft1178_6a-0001-exonagat-exon-31298Ectocarpus subulatus male Bft15bexonScaffold_68 131242..131646 -
EsuBft1178_6a-0001-exonEsuBft1178_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 131726..131869 -
EsuBft1178_6a-0001-exonagat-exon-31300Ectocarpus subulatus male Bft15bexonScaffold_68 132343..132924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_6a-0001-cdsEsuBft1178_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 130371..130880 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_6a-0001-exonagat-five_prime_utr-1127Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_68 132805..132924 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1178_6a-0001 ID=EsuBft1178_6a-0001|Name=EsuBft1178_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1641bp|location=Sequence derived from alignment at Scaffold_68:130371..132924- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AATATTCAACACACACACACATCACACACGCACACACCACGACACCAGAG
GACAGACGCCACAGTGACGAAGTGTACACCTGCTGTTGCAGACCTTAAGA
GCTCTAAGCAGAGGTGCACCATGCCTTGTGCGGAAGGTGAATTGTGTCTT
CAACAGGACAGAACGCCGGAAGACTCTCATGGCCACGTCTGCCAGGGAGG
ATGTGGAGGGCGGCTCCACGGCAACTGCGGCAGCGTGTTTGACGACATCG
AGACGCACCGTATATGCAGCACGTGCGTTACCAGGATTGGCAAGCGCAAA
GCGGCAGCAGCTAACGGTGCTGGGGCGGGACCATCTAAACGCCAGAAGGA
CAAGAGCGGTGGGAGCAAGAAGGGGGGTGTTCGTGCGCGCCCGGACAACA
ACACGAAGCTTGAGATTCTCAAGCTGCTGGATGCGAAGGTCGCTCAAGTA
CAGAATGCAGAACGCTTCGGGTGCTCGGAGCGGTTTGGTAGGACTGTGAA
GGCTGACCGGAAGAAGGTGGAGGCTGCGACTGCTGCAGGCGGCGGCACCC
AGAAAACCGCGCGCAAGGGAGACTTTCCGGAGGTGGATGCGATAGCTCTT
TATCTGCTCGCCAAAGCCCGGAAGGCCAAGGTACCCGTCACACGCGATGT
CCTTCGAAGCTTCGGCCGTTCCGCCAGGACAACCCTGCTGGCTGACACCG
CAACTTCTGCAGCAGTAAGGGCGAGGTGGAAGCTCTTGCCCAGGCGCACG
TACCTTTCCACCTCGGAGGATCGGAAGACGGCGCGGGGTCCAAAGAGCAT
GTACTTCAAGGACCGACTGGCTGCCATCATGTGCTGCAATGCCGGCGGCA
CTGCGAAGGTGGACATGGCCATCATCGGAAAGGCAAAGGAACCCCGTTGC
TTCAAGGACGGGGGTTCACCTCTGAAGTACTTCTCGCAGGCCAACGCGTG
GTCCGACTCTGCGACGTTCCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGT
TCGTTCGGCGCTTCACTCACGAACCTGTGCTGCTGATGATGGACGGCTGT
TCGTCTCACGGTGATCTAGTGGATGATCGNTTCTCGAGAAAGCATGGGCC
AGCGTCACCGCCCAGGATATCGCCAGGTGAGGCTCTCACGGAGACTGTCA
ACAAGATGAGCACGAGCGTCGGCGACGCGCACGAGCAGCGAGTCGGCACC
GTAGACGATGAGATCAGCGAATTCTTCGCAGAACTCGACATCGAACCCGG
AAAGCCGGTCGAGGGAGAAGCGGTGAGCGCCATTCAGGGGTGGGGTACCC
TCGAGGACGACGATGAGGTGGCAGAGGCTCTTCGACTGGACGCAGTGGAC
GAAATGGCGGCACTGCTGGCTGGAACGCAGGTGACAACAGGCGGCGAGGA
GGAGGACGAAGAGGAAGGCAGTGGCGATGACAACACGGGGCCCGAGCGCC
GTGCTCCACCTGCATATGATGAGCTGTCGCCTCACTTCAGCGTCCAAGAA
GCGGCAGCAGATGAGAGTGGCAACGGAGATGCGGCGTTCTTCCTAACGAA
AGCGAAGATGGTAATGATTGCAGCGCATTCCGCTGAGCGGGTGCGCCAGG
CAGACATGAGGGAGTTTGTTGCTCCTACGGAGCAAGGTTGA
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protein sequence of EsuBft1178_6a-0001

>EsuBft1178_6 ID=EsuBft1178_6|Name=EsuBft1178_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=506bp
MPCAEGELCLQQDRTPEDSHGHVCQGGCGGRLHGNCGSVFDDIETHRICS
TCVTRIGKRKAAAANGAGAGPSKRQKDKSGGSKKGGVRARPDNNTKLEIL
KLLDAKVAQVQNAERFGCSERFGRTVKADRKKVEAATAAGGGTQKTARKG
DFPEVDAIALYLLAKARKAKVPVTRDVLRSFGRSARTTLLADTATSAAVR
ARWKLLPRRTYLSTSEDRKTARGPKSMYFKDRLAAIMCCNAGGTAKVDMA
IIGKAKEPRCFKDGGSPLKYFSQANAWSDSATFLKWWLEVFLPFVRRFTH
EPVLLMMDGCSSHGDLVDDRFSRKHGPASPPRISPGEALTETVNKMSTSV
GDAHEQRVGTVDDEISEFFAELDIEPGKPVEGEAVSAIQGWGTLEDDDEV
AEALRLDAVDEMAALLAGTQVTTGGEEEDEEEGSGDDNTGPERRAPPAYD
ELSPHFSVQEAAADESGNGDAAFFLTKAKMVMIAAHSAERVRQADMREFV
APTEQG
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mRNA from alignment at Scaffold_68:130371..132924-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1178_6a-0001 ID=EsuBft1178_6a-0001|Name=EsuBft1178_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2554bp|location=Sequence derived from alignment at Scaffold_68:130371..132924- (Ectocarpus subulatus male Bft15b)
AATATTCAACACACACACACATCACACACGCACACACCACGACACCAGAG
GACAGACGCCACAGTGACGAAGTGTACACCTGCTGTTGCAGACCTTAAGA
GCTCTAAGCAGAGGTGCACCATGCCTTGTGCGGAAGGTGAATTGTGTCTT
CAACAGGACAGAACGCCGGAAGACTCTCATGGCCACGTCTGCCAGGGAGG
ATGTGGAGGGCGGCTCCACGGCAACTGCGGCAGCGTGTTTGACGACATCG
AGACGCACCGTATATGCAGCACGTGCGTTACCAGGATTGGCAAGCGCAAA
GCGGCAGCAGCTAACGGTGCTGGGGCGGGACCATCTAAACGCCAGAAGGA
CAAGAGCGGTGGGAGCAAGAAGGGGGGTGTTCGTGCGCGCCCGGACAACA
ACACGAAGCTTGAGATTCTCAAGCTGCTGGATGCGAAGGTCGCTCAAGTA
CAGAATGCAGAACGCTTCGGGTGCTCGGAGCGGTTTGGTAGGACTGTGAA
GGCTGACCGGAAGAAGGTGGAGGCTGCGACTGCTGCAGGCGGCGGCACCC
AGAAAACCGCGCGCAAGGGAGACTTTCCGGAGGTGAGCTTTCTTTTCCCC
GCCTTTTTTTTCAAAATTGTTGCGGGCCGCTGTTCACTGACCTTTTTTGT
TCGTCCATGCTTTTTTTCTTTTCGTCGTTCTTCATTTTTTTTTCACTGGT
ACAACAGATGTTGTCTCTCTTGTTTTTTCTGTCCATCGTTTGTCTGTCTC
GGTTTTCTCACATATGTATGTCCGCTTTCATCCTCCTTTCCTTTCTGTGT
GGCTAGTCCGCTGTTGATGTCCCCCTCGTTACGTCTTTCCTATTCTTATA
TTTTTTATGTACTCCGTATTATATGTACAGCAGACATAATATATATATAA
TCCATTCCTTTTTTTTTGTGTGTTTTGTTTTGTCTCTCTTTAAGGTACGA
CTGCTGTGTTGTCCCGCCTAACCGCGCCGCGCAGTGTAGGATGCACACTA
ATGTTCGAAACACATGGTAAGACCTTCTGCTTGTTTGCTCGTTTTTTGGC
GGCAGGTGGATGCGATAGCTCTTTATCTGCTCGCCAAAGCCCGGAAGGCC
AAGGTACCCGTCACACGCGATGTCCTTCGAAGCTTCGGCCGTTCCGCCAG
GACAACCCTGCTGGCTGACACCGCAACTTCTGCAGCAGTAAGGGCGAGGG
TCGAGGACTTCAAGGCCNNNNNNNNNNNNNNNNNACCCGGCTAGGTTCAT
CTTCAACGTCGACGAGACAGGCCTCCAGTGGAAGCTCTTGCCCAGGCGCA
CGTACCTTTCCACCTCGGAGGATCGGAAGACGGCGCGGGGTCCAAAGAGC
ATGTACTTCAAGGACCGACTGGCTGCCATCATGTGCTGCAATGCCGGCGG
CACTGCGAAGGTGGACATGGCCATCATCGGAAAGGCAAAGGAACCCCGTT
GCTTCAAGGACGGGGGTTCACCTCTGAAGTACTTCTCGCAGGCCAACGCG
TGGTCCGACTCTGCGACGTTCCTCAAGTGGTGGCTTGAAGTCTTCCTCCC
GTTCGTTCGGCGCTTCACTCACGAACCTGTGCTGCTGATGATGGACGGCT
GTTCGTCTCACGGTGATCTAGTGGATGATCGNTTCTCGAGAAAGCATGGG
CCAGCGTCACCGCCCAGGATATCGCCAGGTGAGGTTTGAACATGTGGTAT
TGCTGTTTTTTTCAGCTCCCGCATGTGCGCGTGGCTTTGGTGGTGCGATA
CGTGGGGACGGTTGTACGGATATTTTCGCATGGGTTTCCTTTTTTTCGAC
AGAGTATTGCAGCACCCGGACATGCCCATTTCTCCTGTTCTAAGAAAGGG
TCCTCTCTCGCATTCCTATGAGTCGTTCTTCGTCACTCCCGTCCAACATC
GCTTGTCCACCCAAAAACGGATGCATTGCATTTTCTGCTACCTGGGACCA
GGTGCTTTGTCAAGGCCGACACGCTTCCTCCGGAGATGGCGGCTGAGCTC
ACCACGGAAAGACTCGATTTAGCATCGCCGAGCCTGACTTGAAGGCTCTC
ACGGAGACTGTCAACAAGATGAGCACGAGCGTCGGCGACGCGCACGAGCA
GCGAGTCGGCACCGTAGACGATGAGATCAGCGAATTCTTCGCAGAACTCG
ACATCGAACCCGGAAAGCCGGTCGAGGGAGAAGCGGTGAGCGCCATTCAG
GGGTGGGGTACCCTCGAGGACGACGATGAGGTGGCAGAGGCTCTTCGACT
GGACGCAGTGGACGAAATGGCGGCACTGCTGGCTGGAACGCAGGTGACAA
CAGGCGGCGAGGAGGAGGACGAAGAGGAAGGCAGTGGCGATGACAACACG
GGGCCCGAGCGCCGTGCTCCACCTGCATATGATGAGCTGTCGCCTCACTT
CAGCGTCCAAGAAGCGGCAGCAGATGAGAGTGGCAACGGAGATGCGGCGT
TCTTCCTAACGAAAGCGAAGATGGTAATGATTGCAGCGCATTCCGCTGAG
CGGGTGCGCCAGGCAGACATGAGGGAGTTTGTTGCTCCTACGGAGCAAGG
TTGA
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Coding sequence (CDS) from alignment at Scaffold_68:130371..132924-

>EsuBft1178_6a-0001 ID=EsuBft1178_6a-0001|Name=EsuBft1178_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1521bp|location=Sequence derived from alignment at Scaffold_68:130371..132924- (Ectocarpus subulatus male Bft15b)
ATGCCTTGTGCGGAAGGTGAATTGTGTCTTCAACAGGACAGAACGCCGGA
AGACTCTCATGGCCACGTCTGCCAGGGAGGATGTGGAGGGCGGCTCCACG
GCAACTGCGGCAGCGTGTTTGACGACATCGAGACGCACCGTATATGCAGC
ACGTGCGTTACCAGGATTGGCAAGCGCAAAGCGGCAGCAGCTAACGGTGC
TGGGGCGGGACCATCTAAACGCCAGAAGGACAAGAGCGGTGGGAGCAAGA
AGGGGGGTGTTCGTGCGCGCCCGGACAACAACACGAAGCTTGAGATTCTC
AAGCTGCTGGATGCGAAGGTCGCTCAAGTACAGAATGCAGAACGCTTCGG
GTGCTCGGAGCGGTTTGGTAGGACTGTGAAGGCTGACCGGAAGAAGGTGG
AGGCTGCGACTGCTGCAGGCGGCGGCACCCAGAAAACCGCGCGCAAGGGA
GACTTTCCGGAGGTGGATGCGATAGCTCTTTATCTGCTCGCCAAAGCCCG
GAAGGCCAAGGTACCCGTCACACGCGATGTCCTTCGAAGCTTCGGCCGTT
CCGCCAGGACAACCCTGCTGGCTGACACCGCAACTTCTGCAGCAGTAAGG
GCGAGGTGGAAGCTCTTGCCCAGGCGCACGTACCTTTCCACCTCGGAGGA
TCGGAAGACGGCGCGGGGTCCAAAGAGCATGTACTTCAAGGACCGACTGG
CTGCCATCATGTGCTGCAATGCCGGCGGCACTGCGAAGGTGGACATGGCC
ATCATCGGAAAGGCAAAGGAACCCCGTTGCTTCAAGGACGGGGGTTCACC
TCTGAAGTACTTCTCGCAGGCCAACGCGTGGTCCGACTCTGCGACGTTCC
TCAAGTGGTGGCTTGAAGTCTTCCTCCCGTTCGTTCGGCGCTTCACTCAC
GAACCTGTGCTGCTGATGATGGACGGCTGTTCGTCTCACGGTGATCTAGT
GGATGATCGNTTCTCGAGAAAGCATGGGCCAGCGTCACCGCCCAGGATAT
CGCCAGGTGAGGCTCTCACGGAGACTGTCAACAAGATGAGCACGAGCGTC
GGCGACGCGCACGAGCAGCGAGTCGGCACCGTAGACGATGAGATCAGCGA
ATTCTTCGCAGAACTCGACATCGAACCCGGAAAGCCGGTCGAGGGAGAAG
CGGTGAGCGCCATTCAGGGGTGGGGTACCCTCGAGGACGACGATGAGGTG
GCAGAGGCTCTTCGACTGGACGCAGTGGACGAAATGGCGGCACTGCTGGC
TGGAACGCAGGTGACAACAGGCGGCGAGGAGGAGGACGAAGAGGAAGGCA
GTGGCGATGACAACACGGGGCCCGAGCGCCGTGCTCCACCTGCATATGAT
GAGCTGTCGCCTCACTTCAGCGTCCAAGAAGCGGCAGCAGATGAGAGTGG
CAACGGAGATGCGGCGTTCTTCCTAACGAAAGCGAAGATGGTAATGATTG
CAGCGCATTCCGCTGAGCGGGTGCGCCAGGCAGACATGAGGGAGTTTGTT
GCTCCTACGGAGCAAGGTTGA
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