EsuBft1178_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1178_5a-0001
Unique Name	EsuBft1178_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_68	contig	Scaffold_68:135239..138410 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7070.TC002223-PA
ProteomeId	EsuBft1178_5
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1803
Hectar predicted targeting category	other localisation
Evalue	1.7e-30
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BI7U@33208\|Metazoa,3CTS1@33213\|Bilateria,41WYJ@6656\|Arthropoda,3SH01@50557\|Insecta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Encoded by
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824
GO	0005488
GO	0090304
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1178_5a	EsuBft1178_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_68 135239..138410 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1178_5a-0001-exon	agat-exon-31297	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 135239..135883 -
EsuBft1178_5a-0001-exon	EsuBft1178_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 137253..138410 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1178_5a-0001-exon	agat-three_prime_utr-1705	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_68 135239..135883 -
EsuBft1178_5a-0001-exon	agat-three_prime_utr-1706	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_68 137253..137885 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1178_5a-0001-cds	EsuBft1178_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_68 137886..138410 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1178_5a-0001	EsuBft1178_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_68 137886..138410 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_68:135239..138410-
coding sequence from alignment at Scaffold_68:135239..138410-

spliced messenger RNA

>EsuBft1178_5a-0001 ID=EsuBft1178_5a-0001|Name=EsuBft1178_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1803bp|location=Sequence derived from alignment at Scaffold_68:135239..138410- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATATTTTAGGCTATGCGAGGAGGACGAGTCACTTTGGTATTTCGTT
TCAGAGAGGTACGGTAGAGGGGTTCAGCTTGCAGGTATACGCTGATGCGG
ACTTTGCAAGCAAGGCAGCAGACCGTAGGTCGGTATCAGGGGGGATCGTG
ACGTGTGGAGGAGGCGCTGTGTCTTGGTTTTCCAGAACGCAAAAGTGCGT
CACACTTTCGACGACAGAAGCAGAGTACGTCGCGCTAGGCGACGTAGTGA
AGGAGATTTTGTTTTTGAGGCAGATTTGGCGTTTCATGTTGCCGCAGGTC
GGCATGCCGTGCATCCCCGTCTTCGAGGACAACCAGGGGGCGATTCAAGT
AGCGCAGAACCCCATCTCAAACTCGAACTCGAAACACATTGATGTAAGGC
ACCATTTTCTCAGGGAACTGGTAGAGAGGAAGGAAAGTTCGGTCATTCAC
GTGCCGTCGCCGTACCAGCGTGCAGACTTTCCTTACGAAGAGTTTGTCGA
AGGATGCATTCGAGTCTCACCGTGATTTTGTGATGAATTTGGCATGAACA
TTTTGTTGTTTTTCTGATAGGTTGTGTTTTGGTTTTGTTTTGCTTCTCGT
TTTGTTNCTGATAGGTTGTGTTTTGTTTTTGTTTTGCTTCTCGTTTTGTT
TCCCGTTTTCTTTCATTTCCCGCGCCAAGTATTTGTTACGAGCGATGCAG
CATTCATATTCCTTTGAATTGTTTTTCTCTCTCTTATGTTATTCTGGTAA
AGTCTTGGTGGCATATCGTCTGGGAAAGACGTCTTTTGGTTGAGATATCG
GGTGTTAGCGAGTTTTCAGTGAGAGAGTGTTGCGAGCAGGGGGGATGTTA
GATATACTCGCAGCAGTATCTGGTCGTGAGGATCCCAAGGGGATACATGT
TCGGAATTCTGTGTGTTGTAGACTAACGCCGGTGCAGTCACGGGGACCCT
TTTGGCGCGGTTGGTACGATGAGGCTTGCGCGTGTGCTGCGCACTTCNCT
TTCACGACAGCTCTCCGTCGTCCATTCACACCCAACCCGGGGCTCGCATT
CTGTCGCGGAATCAGCGGCGGATGAATGACCATCTCCGCGGGAATCCCAG
CCCTGGCCAGCACCTTCCACAGCAGCTCTCGATCCATCGAGTCATAAGCC
TTCTGCAGGTGCACCTACCCATGCGTGAAGGAGGACTGGGAACCACGAGC
AATGTCCTCATTCGATAGACGGCTTTTGTGGCAGGGCTAGCGCTGGTGTT
CTCCAACTCAGTGCAAGCAATGACAGGATACAAAGTTGAGCAATGTCTAC
CCCGGCTTGCCCAGCTACCGACAGGGTTGGCTCTGATTGACTCGCTGAAG
AAGCTAGAGGAAATCATCACCAAAGACAAGCTTGAAAAAGCTGTTGGGCA
GTCATGCAGTGGACTTGCGGGAAAAATGGGAACGTACCCAAAAATGAGAA
TTGGCGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGCCATGCTCCACATCACGCCTTCTCACGGGCGCAAAAAGCGA
TTCGTGCTGGTTTCGACCTGATTTCTCGCGATGCTGGCTACCTCGGCGAT
GCCGAGGACATACAGCTTGAGCAACAGCTCATTCGAAAGCTGCTGTAATG
ACCTACAGCACTGTCAACTTTTATGGGGGGAGTTGCAAAGGCGTCGTTTG
CTTTCTAAAAACAAACGCCCATTCTCATTTTTGGGTACGTTCCCATTTTT
CCC

protein sequence of EsuBft1178_5a-0001

>EsuBft1178_5 ID=EsuBft1178_5|Name=EsuBft1178_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=174bp
MDILGYARRTSHFGISFQRGTVEGFSLQVYADADFASKAADRRSVSGGIV
TCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQV
GMPCIPVFEDNQGAIQVAQNPISNSNSKHIDVRHHFLRELVERKESSVIH
VPSPYQRADFPYEEFVEGCIRVSP

mRNA from alignment at Scaffold_68:135239..138410-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1178_5a-0001 ID=EsuBft1178_5a-0001|Name=EsuBft1178_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3172bp|location=Sequence derived from alignment at Scaffold_68:135239..138410- (Ectocarpus subulatus male Bft15b)
ATGGATATTTTAGGCTATGCGAGGAGGACGAGTCACTTTGGTATTTCGTT
TCAGAGAGGTACGGTAGAGGGGTTCAGCTTGCAGGTATACGCTGATGCGG
ACTTTGCAAGCAAGGCAGCAGACCGTAGGTCGGTATCAGGGGGGATCGTG
ACGTGTGGAGGAGGCGCTGTGTCTTGGTTTTCCAGAACGCAAAAGTGCGT
CACACTTTCGACGACAGAAGCAGAGTACGTCGCGCTAGGCGACGTAGTGA
AGGAGATTTTGTTTTTGAGGCAGATTTGGCGTTTCATGTTGCCGCAGGTC
GGCATGCCGTGCATCCCCGTCTTCGAGGACAACCAGGGGGCGATTCAAGT
AGCGCAGAACCCCATCTCAAACTCGAACTCGAAACACATTGATGTAAGGC
ACCATTTTCTCAGGGAACTGGTAGAGAGGAAGGAAAGTTCGGTCATTCAC
GTGCCGTCGCCGTACCAGCGTGCAGACTTTCCTTACGAAGAGTTTGTCGA
AGGATGCATTCGAGTCTCACCGTGATTTTGTGATGAATTTGGCATGAACA
TTTTGTTGTTTTTCTGATAGGTTGTGTTTTGGTTTTGTTTTGCTTCTCGT
TTTGTTNCTGATAGGTTGTGTTTTGTTTTTGTTTTGCTTCTCGTTTTGTT
TCCCGTTTTCTTTCATTTCCCGCGCCAAGTATTTGTTACGAGCGATGCAG
CATTCATATTCCTTTGAATTGTTTTTCTCTCTCTTATGTTATTCTGGTAA
AGTCTTGGTGGCATATCGTCTGGGAAAGACGTCTTTTGGTTGAGATATCG
GGTGTTAGCGAGTTTTCAGTGAGAGAGTGTTGCGAGCAGGGGGGATGTTA
GATATACTCGCAGCAGTATCTGGTCGTGAGGATCCCAAGGGGATACATGT
TCGGAATTCTGTGTGTTGTAGACTAACGCCGGTGCAGTCACGGGGACCCT
TTTGGCGCGGTTGGTACGATGAGGCTTGCGCGTGTGCTGCGCACTTCNCT
TTCACGACAGCTCTCCGTCGTCCATTCACACCCAACCCGGGGCTCGCATT
CTGTCGCGGAATCAGCGGCGGATGAATGACCATCTCCGCGGGAATCCCAG
CCCTGGCCAGCACCTTCCACAGCAGCTCTCGATCCATCGAGTCATAAGCC
TTCTGCAGGTATATGAAGCACATGTAGAGCGGAATATTTTCCTCGCCGCC
CTTGCTCCTGGAGTCGACGCATGAAAAACAGCATGCCGACGATGGATCGC
CAAGGTCGGAATCCGAATTGCTCCTTGGGTATGATGTTTATTTCGCCAAT
TTTTCCTGCCCTTTTCGTTCAAGGCGGTACTTCGCATTGAGCACGCTTTG
GTCTGGTACTACACAAAGCGCACACACAGCACACCCACCCCGGTGCCGAA
CGCAGATAACACCAGAACTCTACCGCGGCGCTTCTCTCTGGTGGTGCGAC
TGAAGGAGAAGGGACGAAAGAAATATGTGGTGAGCTGCCCAACCATGATT
GTACAGCCCCGGCAGCAGACCGCTTTGTTACCATAATTACATCCGACTTG
ATGCGACAAACGTGTTCCGTCTCTAACGAACGACACGGGTAATTTCTCGC
CCCTTTCTGGCGACGTTTCGCGGACACCATGGGAGCCGGTGGTGATCGTC
TCCAGCAGCAGCAGGCTATCGATGACGTGAGCGGTATGCAAACTTGCATA
CAGCCTACAATCTGCTGTACGTACGTAGACTACAATAGTTTGATGCCATC
ACACACCAAACCCGGGCCGTATCCAACGCGGGCCGTGGCCCACATTTGTG
CATTGGGCAGCAGTCGTTCCTTGTGAGGAGCTGTGGCGAGATGTTGCTGG
ATGTCTCTCTCTAGCCCGACAACAACATCTTGTAGGAGCCTGTTTCTCGA
ACCACTGTCTCCAGAAGCGTGGACCGGAGCTGCGCCATCAACCTTCAATC
CACCATGGTGGATTTTAATACACACACAGAAAGCTACCCGTTAGAGATAG
TCTAGACGATACCCACATTCAAACGGCGTCTCTCCCAACAAGGGATTGAG
CTCAGTCTCCCGAATTCCAAAGCGCTTTCCCGGAGGGTCTTTGCATGTCC
TCTTTCACAGACGACGAACAGCAACAGTTGACGAAAATTGGTCTGTCAGT
TGCTGAAGGTGGCATGCCAGTAGTCGGGATCCCAGTAGGGACAGAAGAGT
TCCAGAGGAATTTCATTTCCAAATTCGCCCGTGGTGACCCGGCGGAATTG
ATACGCCGCCTAAGAAACGCTTGACGACCCTCAAGCCAGCTATCAACTGC
TACGTTTATCTGGTGCGCCACGTTTGTTTCATCTGCTGAGGACGATTGCA
CCGTCTATCACCAACTCTGCCGCAAAAATACATGACAACATGATGATGTG
GGCAATGAGTAAGATCGTCCTTGGCAAGATGGCCGACAGCATGAGAATAC
CAACGGTCAAAGAAGTACGCGCAGACCCGACGAAGAGCGAGGAGGTAGAT
TTCTTCAAAGGAACAGCTCGGGCGCAGGTGCACCTACCCATGCGTGAAGG
AGGACTGGGAACCACGAGCAATGTCCTCATTCGATAGACGGCTTTTGTGG
CAGGGCTAGCGCTGGTGTTCTCCAACTCAGTGCAAGCAATGACAGGATAC
AAAGTTGAGCAATGTCTACCCCGGCTTGCCCAGCTACCGACAGGGTTGGC
TCTGATTGACTCGCTGAAGAAGCTAGAGGAAATCATCACCAAAGACAAGC
TTGAAAAAGCTGTTGGGCAGTCATGCAGTGGACTTGCGGGAAAAATGGGA
ACGTACCCAAAAATGAGAATTGGCGTTTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGCCATGCTCCACATCACGCCTTC
TCACGGGCGCAAAAAGCGATTCGTGCTGGTTTCGACCTGATTTCTCGCGA
TGCTGGCTACCTCGGCGATGCCGAGGACATACAGCTTGAGCAACAGCTCA
TTCGAAAGCTGCTGTAATGACCTACAGCACTGTCAACTTTTATGGGGGGA
GTTGCAAAGGCGTCGTTTGCTTTCTAAAAACAAACGCCCATTCTCATTTT
TGGGTACGTTCCCATTTTTCCC

Coding sequence (CDS) from alignment at Scaffold_68:135239..138410-

>EsuBft1178_5a-0001 ID=EsuBft1178_5a-0001|Name=EsuBft1178_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=525bp|location=Sequence derived from alignment at Scaffold_68:135239..138410- (Ectocarpus subulatus male Bft15b)
ATGGATATTTTAGGCTATGCGAGGAGGACGAGTCACTTTGGTATTTCGTT
TCAGAGAGGTACGGTAGAGGGGTTCAGCTTGCAGGTATACGCTGATGCGG
ACTTTGCAAGCAAGGCAGCAGACCGTAGGTCGGTATCAGGGGGGATCGTG
ACGTGTGGAGGAGGCGCTGTGTCTTGGTTTTCCAGAACGCAAAAGTGCGT
CACACTTTCGACGACAGAAGCAGAGTACGTCGCGCTAGGCGACGTAGTGA
AGGAGATTTTGTTTTTGAGGCAGATTTGGCGTTTCATGTTGCCGCAGGTC
GGCATGCCGTGCATCCCCGTCTTCGAGGACAACCAGGGGGCGATTCAAGT
AGCGCAGAACCCCATCTCAAACTCGAACTCGAAACACATTGATGTAAGGC
ACCATTTTCTCAGGGAACTGGTAGAGAGGAAGGAAAGTTCGGTCATTCAC
GTGCCGTCGCCGTACCAGCGTGCAGACTTTCCTTACGAAGAGTTTGTCGA
AGGATGCATTCGAGTCTCACCGTGA