Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7070.TC002223-PA |
| ProteomeId | EsuBft1178_5 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 1803 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.7e-30 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SH01@50557|Insecta |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Encoded by |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
| GO | 0005488 |
| GO | 0090304 |
| GO | 0016740 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1178_5a-0001 ID=EsuBft1178_5a-0001|Name=EsuBft1178_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1803bp|location=Sequence derived from alignment at Scaffold_68:135239..138410- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGATATTTTAGGCTATGCGAGGAGGACGAGTCACTTTGGTATTTCGTT
TCAGAGAGGTACGGTAGAGGGGTTCAGCTTGCAGGTATACGCTGATGCGG
ACTTTGCAAGCAAGGCAGCAGACCGTAGGTCGGTATCAGGGGGGATCGTG
ACGTGTGGAGGAGGCGCTGTGTCTTGGTTTTCCAGAACGCAAAAGTGCGT
CACACTTTCGACGACAGAAGCAGAGTACGTCGCGCTAGGCGACGTAGTGA
AGGAGATTTTGTTTTTGAGGCAGATTTGGCGTTTCATGTTGCCGCAGGTC
GGCATGCCGTGCATCCCCGTCTTCGAGGACAACCAGGGGGCGATTCAAGT
AGCGCAGAACCCCATCTCAAACTCGAACTCGAAACACATTGATGTAAGGC
ACCATTTTCTCAGGGAACTGGTAGAGAGGAAGGAAAGTTCGGTCATTCAC
GTGCCGTCGCCGTACCAGCGTGCAGACTTTCCTTACGAAGAGTTTGTCGA
AGGATGCATTCGAGTCTCACCGTGATTTTGTGATGAATTTGGCATGAACA
TTTTGTTGTTTTTCTGATAGGTTGTGTTTTGGTTTTGTTTTGCTTCTCGT
TTTGTTNCTGATAGGTTGTGTTTTGTTTTTGTTTTGCTTCTCGTTTTGTT
TCCCGTTTTCTTTCATTTCCCGCGCCAAGTATTTGTTACGAGCGATGCAG
CATTCATATTCCTTTGAATTGTTTTTCTCTCTCTTATGTTATTCTGGTAA
AGTCTTGGTGGCATATCGTCTGGGAAAGACGTCTTTTGGTTGAGATATCG
GGTGTTAGCGAGTTTTCAGTGAGAGAGTGTTGCGAGCAGGGGGGATGTTA
GATATACTCGCAGCAGTATCTGGTCGTGAGGATCCCAAGGGGATACATGT
TCGGAATTCTGTGTGTTGTAGACTAACGCCGGTGCAGTCACGGGGACCCT
TTTGGCGCGGTTGGTACGATGAGGCTTGCGCGTGTGCTGCGCACTTCNCT
TTCACGACAGCTCTCCGTCGTCCATTCACACCCAACCCGGGGCTCGCATT
CTGTCGCGGAATCAGCGGCGGATGAATGACCATCTCCGCGGGAATCCCAG
CCCTGGCCAGCACCTTCCACAGCAGCTCTCGATCCATCGAGTCATAAGCC
TTCTGCAGGTGCACCTACCCATGCGTGAAGGAGGACTGGGAACCACGAGC
AATGTCCTCATTCGATAGACGGCTTTTGTGGCAGGGCTAGCGCTGGTGTT
CTCCAACTCAGTGCAAGCAATGACAGGATACAAAGTTGAGCAATGTCTAC
CCCGGCTTGCCCAGCTACCGACAGGGTTGGCTCTGATTGACTCGCTGAAG
AAGCTAGAGGAAATCATCACCAAAGACAAGCTTGAAAAAGCTGTTGGGCA
GTCATGCAGTGGACTTGCGGGAAAAATGGGAACGTACCCAAAAATGAGAA
TTGGCGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGCCATGCTCCACATCACGCCTTCTCACGGGCGCAAAAAGCGA
TTCGTGCTGGTTTCGACCTGATTTCTCGCGATGCTGGCTACCTCGGCGAT
GCCGAGGACATACAGCTTGAGCAACAGCTCATTCGAAAGCTGCTGTAATG
ACCTACAGCACTGTCAACTTTTATGGGGGGAGTTGCAAAGGCGTCGTTTG
CTTTCTAAAAACAAACGCCCATTCTCATTTTTGGGTACGTTCCCATTTTT
CCC back to topprotein sequence of EsuBft1178_5a-0001 >EsuBft1178_5 ID=EsuBft1178_5|Name=EsuBft1178_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=174bp
MDILGYARRTSHFGISFQRGTVEGFSLQVYADADFASKAADRRSVSGGIV
TCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQV
GMPCIPVFEDNQGAIQVAQNPISNSNSKHIDVRHHFLRELVERKESSVIH
VPSPYQRADFPYEEFVEGCIRVSP back to topmRNA from alignment at Scaffold_68:135239..138410- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1178_5a-0001 ID=EsuBft1178_5a-0001|Name=EsuBft1178_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3172bp|location=Sequence derived from alignment at Scaffold_68:135239..138410- (Ectocarpus subulatus male Bft15b)
ATGGATATTTTAGGCTATGCGAGGAGGACGAGTCACTTTGGTATTTCGTT
TCAGAGAGGTACGGTAGAGGGGTTCAGCTTGCAGGTATACGCTGATGCGG
ACTTTGCAAGCAAGGCAGCAGACCGTAGGTCGGTATCAGGGGGGATCGTG
ACGTGTGGAGGAGGCGCTGTGTCTTGGTTTTCCAGAACGCAAAAGTGCGT
CACACTTTCGACGACAGAAGCAGAGTACGTCGCGCTAGGCGACGTAGTGA
AGGAGATTTTGTTTTTGAGGCAGATTTGGCGTTTCATGTTGCCGCAGGTC
GGCATGCCGTGCATCCCCGTCTTCGAGGACAACCAGGGGGCGATTCAAGT
AGCGCAGAACCCCATCTCAAACTCGAACTCGAAACACATTGATGTAAGGC
ACCATTTTCTCAGGGAACTGGTAGAGAGGAAGGAAAGTTCGGTCATTCAC
GTGCCGTCGCCGTACCAGCGTGCAGACTTTCCTTACGAAGAGTTTGTCGA
AGGATGCATTCGAGTCTCACCGTGATTTTGTGATGAATTTGGCATGAACA
TTTTGTTGTTTTTCTGATAGGTTGTGTTTTGGTTTTGTTTTGCTTCTCGT
TTTGTTNCTGATAGGTTGTGTTTTGTTTTTGTTTTGCTTCTCGTTTTGTT
TCCCGTTTTCTTTCATTTCCCGCGCCAAGTATTTGTTACGAGCGATGCAG
CATTCATATTCCTTTGAATTGTTTTTCTCTCTCTTATGTTATTCTGGTAA
AGTCTTGGTGGCATATCGTCTGGGAAAGACGTCTTTTGGTTGAGATATCG
GGTGTTAGCGAGTTTTCAGTGAGAGAGTGTTGCGAGCAGGGGGGATGTTA
GATATACTCGCAGCAGTATCTGGTCGTGAGGATCCCAAGGGGATACATGT
TCGGAATTCTGTGTGTTGTAGACTAACGCCGGTGCAGTCACGGGGACCCT
TTTGGCGCGGTTGGTACGATGAGGCTTGCGCGTGTGCTGCGCACTTCNCT
TTCACGACAGCTCTCCGTCGTCCATTCACACCCAACCCGGGGCTCGCATT
CTGTCGCGGAATCAGCGGCGGATGAATGACCATCTCCGCGGGAATCCCAG
CCCTGGCCAGCACCTTCCACAGCAGCTCTCGATCCATCGAGTCATAAGCC
TTCTGCAGGTATATGAAGCACATGTAGAGCGGAATATTTTCCTCGCCGCC
CTTGCTCCTGGAGTCGACGCATGAAAAACAGCATGCCGACGATGGATCGC
CAAGGTCGGAATCCGAATTGCTCCTTGGGTATGATGTTTATTTCGCCAAT
TTTTCCTGCCCTTTTCGTTCAAGGCGGTACTTCGCATTGAGCACGCTTTG
GTCTGGTACTACACAAAGCGCACACACAGCACACCCACCCCGGTGCCGAA
CGCAGATAACACCAGAACTCTACCGCGGCGCTTCTCTCTGGTGGTGCGAC
TGAAGGAGAAGGGACGAAAGAAATATGTGGTGAGCTGCCCAACCATGATT
GTACAGCCCCGGCAGCAGACCGCTTTGTTACCATAATTACATCCGACTTG
ATGCGACAAACGTGTTCCGTCTCTAACGAACGACACGGGTAATTTCTCGC
CCCTTTCTGGCGACGTTTCGCGGACACCATGGGAGCCGGTGGTGATCGTC
TCCAGCAGCAGCAGGCTATCGATGACGTGAGCGGTATGCAAACTTGCATA
CAGCCTACAATCTGCTGTACGTACGTAGACTACAATAGTTTGATGCCATC
ACACACCAAACCCGGGCCGTATCCAACGCGGGCCGTGGCCCACATTTGTG
CATTGGGCAGCAGTCGTTCCTTGTGAGGAGCTGTGGCGAGATGTTGCTGG
ATGTCTCTCTCTAGCCCGACAACAACATCTTGTAGGAGCCTGTTTCTCGA
ACCACTGTCTCCAGAAGCGTGGACCGGAGCTGCGCCATCAACCTTCAATC
CACCATGGTGGATTTTAATACACACACAGAAAGCTACCCGTTAGAGATAG
TCTAGACGATACCCACATTCAAACGGCGTCTCTCCCAACAAGGGATTGAG
CTCAGTCTCCCGAATTCCAAAGCGCTTTCCCGGAGGGTCTTTGCATGTCC
TCTTTCACAGACGACGAACAGCAACAGTTGACGAAAATTGGTCTGTCAGT
TGCTGAAGGTGGCATGCCAGTAGTCGGGATCCCAGTAGGGACAGAAGAGT
TCCAGAGGAATTTCATTTCCAAATTCGCCCGTGGTGACCCGGCGGAATTG
ATACGCCGCCTAAGAAACGCTTGACGACCCTCAAGCCAGCTATCAACTGC
TACGTTTATCTGGTGCGCCACGTTTGTTTCATCTGCTGAGGACGATTGCA
CCGTCTATCACCAACTCTGCCGCAAAAATACATGACAACATGATGATGTG
GGCAATGAGTAAGATCGTCCTTGGCAAGATGGCCGACAGCATGAGAATAC
CAACGGTCAAAGAAGTACGCGCAGACCCGACGAAGAGCGAGGAGGTAGAT
TTCTTCAAAGGAACAGCTCGGGCGCAGGTGCACCTACCCATGCGTGAAGG
AGGACTGGGAACCACGAGCAATGTCCTCATTCGATAGACGGCTTTTGTGG
CAGGGCTAGCGCTGGTGTTCTCCAACTCAGTGCAAGCAATGACAGGATAC
AAAGTTGAGCAATGTCTACCCCGGCTTGCCCAGCTACCGACAGGGTTGGC
TCTGATTGACTCGCTGAAGAAGCTAGAGGAAATCATCACCAAAGACAAGC
TTGAAAAAGCTGTTGGGCAGTCATGCAGTGGACTTGCGGGAAAAATGGGA
ACGTACCCAAAAATGAGAATTGGCGTTTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGCCATGCTCCACATCACGCCTTC
TCACGGGCGCAAAAAGCGATTCGTGCTGGTTTCGACCTGATTTCTCGCGA
TGCTGGCTACCTCGGCGATGCCGAGGACATACAGCTTGAGCAACAGCTCA
TTCGAAAGCTGCTGTAATGACCTACAGCACTGTCAACTTTTATGGGGGGA
GTTGCAAAGGCGTCGTTTGCTTTCTAAAAACAAACGCCCATTCTCATTTT
TGGGTACGTTCCCATTTTTCCC back to topCoding sequence (CDS) from alignment at Scaffold_68:135239..138410- >EsuBft1178_5a-0001 ID=EsuBft1178_5a-0001|Name=EsuBft1178_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=525bp|location=Sequence derived from alignment at Scaffold_68:135239..138410- (Ectocarpus subulatus male Bft15b)
ATGGATATTTTAGGCTATGCGAGGAGGACGAGTCACTTTGGTATTTCGTT
TCAGAGAGGTACGGTAGAGGGGTTCAGCTTGCAGGTATACGCTGATGCGG
ACTTTGCAAGCAAGGCAGCAGACCGTAGGTCGGTATCAGGGGGGATCGTG
ACGTGTGGAGGAGGCGCTGTGTCTTGGTTTTCCAGAACGCAAAAGTGCGT
CACACTTTCGACGACAGAAGCAGAGTACGTCGCGCTAGGCGACGTAGTGA
AGGAGATTTTGTTTTTGAGGCAGATTTGGCGTTTCATGTTGCCGCAGGTC
GGCATGCCGTGCATCCCCGTCTTCGAGGACAACCAGGGGGCGATTCAAGT
AGCGCAGAACCCCATCTCAAACTCGAACTCGAAACACATTGATGTAAGGC
ACCATTTTCTCAGGGAACTGGTAGAGAGGAAGGAAAGTTCGGTCATTCAC
GTGCCGTCGCCGTACCAGCGTGCAGACTTTCCTTACGAAGAGTTTGTCGA
AGGATGCATTCGAGTCTCACCGTGA back to top
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