Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FP33 |
| ProteomeId | EsuBft1178_4 |
| Protein domains | PS51257 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 130 |
| Hectar predicted targeting category | other localisation |
| Evalue | 7.6e-05 |
| EggNOG OGs | COG5021@1|root,KOG0940@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | ubiquitin protein ligase activity |
| COG category | O |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1178_4a-0001 ID=EsuBft1178_4a-0001|Name=EsuBft1178_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1306bp|location=Sequence derived from alignment at Scaffold_68:142195..144882- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AGTCTACGACGTGCGTGGAAGATGGAGAAGAGTGGGAGCCTCACAGAGTG
GGTGTACGCGTTCCTGACCGATCCAGAGGACCTTACCATGGTGTCGACGG
CAATACAGTTGTCCTACAGCTGCATTACAAGTACATCCACCAGCCACGTC
TTCAACTCGGTGGGAATCGGCCTCACCAACCAGATTAAATATACCGGGGA
CATCATTTCTTCGTACAAGGCTGTATCGATAAACTCCGGGGTGTACAAGG
ATCAGGCGGACGGTGACATCACCAAGCCATACGCCCGTTTGTCGATGGAG
CTCAAGCAACAGTTTGACTCATGGGAGATCATCACAGAAGCGGACCCATT
CGAATTCGCCGAGATTCTTGGTAACATCGGAGGGTTTTGGGATCTGATCC
TGATTTTATGGCCTTTGTTCTTTGTGGCGGCCAGCCAGCCAGAACCAAAT
CTCAAGCCTCGCAACTTTGCGAAATCGTTCACCAGGACAGTAGAGCGCTT
CTCGGGCATGACGAAAACAGTCGCCAACTCGGGGCCTATGAGGCGTATCG
AATCTATCGAGATGAGAAACGGAACGAGCGGTGCATCCCTGGAAGACGGC
CTCCAAGAAGAGCCGGTGCCGTGGGAACATCCACCCGCATTAGGGGTACA
GAGGAGCCTTTCAAGAAGAGTACCTAATAGCTTCCGGGTGATGCAGCCCG
ATGCTTGACCCGTTTGGGACATCCATCCCCAAAGTTGGTCGGAAAATGTG
TGTGTTGTAGTCTAAACCAATGGGTGCTTTTGCATGGCGCTCCATTTTAT
GTTTGGAATGAACCAATACATGCATGATTAGGGATGATCTTTCCAGTATT
TATATTTCAATCGGTGAGGATGGCGTGTTGTCGTGATTTTTGAGCCTTTG
GAGTAAGATACCATCTGGGTGGGCATGTCTTGTACATAATCACCTGCCGA
GCTGTGTTCCGTATTGATGCAAGCAGCGGGCCATTCGCTGTTTGGTAGCA
GCAAGCACGTTTGTATTTAATTCTTCAGTGTTGCCTGGGATCGAGGGATG
GCCAGTGATTACCAAGGGATGGGATAGGAAAGGAAATTAGACTGAAACAG
AGCCACAACTCTACACACAATGGTCGGATTCCCTCCACAGTGAAAGATCG
AGTCACATTTGGCCCCGGCTTGGGATCCACGTGCGCAAGGGCTTTCTGGT
TTTGGTCTGATTGAGATTTTTTCTGGGTGTTGGGCGTCTGTCTTCCTTTT
GTGCGCTTCCCTCGCTCTTCAAAGGCAAAATGAAACCATCAGACTAAATA
GTCCTG back to topprotein sequence of EsuBft1178_4a-0001 >EsuBft1178_4 ID=EsuBft1178_4|Name=EsuBft1178_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=228bp
MEKSGSLTEWVYAFLTDPEDLTMVSTAIQLSYSCITSTSTSHVFNSVGIG
LTNQIKYTGDIISSYKAVSINSGVYKDQADGDITKPYARLSMELKQQFDS
WEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFA
KSFTRTVERFSGMTKTVANSGPMRRIESIEMRNGTSGASLEDGLQEEPVP
WEHPPALGVQRSLSRRVPNSFRVMQPDA back to topmRNA from alignment at Scaffold_68:142195..144882- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1178_4a-0001 ID=EsuBft1178_4a-0001|Name=EsuBft1178_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2688bp|location=Sequence derived from alignment at Scaffold_68:142195..144882- (Ectocarpus subulatus male Bft15b)
AGTCTACGACGTGCGTGGAAGATGGAGAAGAGTGGGAGCCTCACAGGTGA
ACAAACCCAAACCGTCTACACAGGATAATGAGACGGCAAAAATCGGAGAA
TGCCATGCATATGACATGAGACCCCCCAACATTCAGGCGAGTGACGTACG
TCTTTTGGGCATGGCGGAGATCGTCCACAAGACGGTAGACGTTACTTTTC
TTCCCAACGACTCGTCGCTGTATTCCTCCCGGACCTCGCAGAGAGTGGGT
GTACGCGTTCCTGACCGATCCAGAGGACCTTACCATGGTGTCGACGGCAA
TACAGTTGTCCTACAGCTGCATTACAAGTACATCCACCAGCCACGTCTTC
AACTCGGTGGTGAGCTAACCCCCACACGGTGGACTTTGGAACCTTCAGCT
AGAGAGGCGAGTGTGCCGACAGCCGCTCTGTGCACCTAACATGCTGGTGA
GGATGCTTACACCATATTCGTTTCATCACTGGAAGGCGGCTAGTCGTTTT
TGCTATTGTGTGTGTTTTGTGTAGTGTTGTAGCATGCCTTTTCATGGAAC
TCCTCTCACAGCGCTGAACGTGGGTGCGCGCCTCGCGTGGTTTTCTGATC
CAGGGAATCGGCCTCACCAACCAGATTAAATATACCGGGGACATCATTTC
TTCGTACAAGGCTGTATCGATAAACTCCGGGGTGTACAAGGATCAGGTGA
GATGGGCAACTCAAAAGACTGGTCGTTACGTGTTCGTGGAAGCTATCAAC
GCTTCCCGCGTTACACGCCACAAGACCGTGACGGAGAACTACCGGAGCCT
CGCTGCTTGTCGTCCCCTTGAAAGAAGATCTTCGCGTGTCTCTATCTGTC
ACTCGTACTTCCCCTTCTCCAGGCGGACGGTGACATCACCAAGCCATACG
CCCGTTTGTCGATGGAGCTCAAGCAACAGTTTGACTCATGGGAGATCATC
ACAGAAGCGGACCCATTCGAATTCGCCGAGATTCTTGGTAACATCGGAGG
GTTTTGGGGTAAGCGAACACGCAAGCAAGCCAAAGACCAAAGCTCGCGGG
GAACGCGCAGGGTCTGCATCAGGCAGACCTGCCGTGTTTGGCACCAGCTA
TGCGTTCTCTGCCATCAAATACCCTCTGCTGGTAACCCTGCACGCGATTT
AATCTTGCTCGGTTCTCTTCGCTATTGTTGTGTTCTCCTCGCCCGTTCCT
TTGCAGATCTGATCCTGATTTTATGGCCTTTGTTCTTTGTGGCGGCCAGC
CAGCCAGAACCAAATCTCAAGCCTCGCAACTTTGCGAAATCGTTCACCAG
GACAGTAGAGCGCTTCTCGGGCATGACGAAAACAGTCGCCAACTCGGGGC
CTATGAGGCGTATCGAATCTATCGAGATGAGAAACGGAACGAGCGGTGCA
TCCCTGGAAGACGGCCTCCAAGAAGAGCCGGTGCCGTGGGAACATCCACC
CGCATTAGGGGTACAGGTGCGCGTAACGTCCCCTTGGGTTCGTTGCCACT
GCATGAAATGCTTCCCGGGAGACGAGGTTCGCCATGGTTTAGCGCACTGT
GCATCATAGTGGTCGTTTAGCGAGGGAGGCCGTACCCTTCGATTCCTTGT
CACATTTTGGGCGCGCCGAACATTCCAATGACCAGAGACGATGCTTGTCG
ATCTTTCCGTTCGGGCGAATCATGCAAATCGAAGTTGGCTTGGGGTCTTC
CATAATGGAATCAATCGTGACGGTTTAGGAGATTTAGTGGTGCTTGTTCG
ACCTTTGAAGGGACTTTGTCCAGTTTTTTACTGCAAGTTCATTGAACAGT
TATGATCGTGAGTCAGCAGTGCCTTCCGTTGTCTTTGGTTCGACACATTC
GTTCGCAGAACAAACACGTTAATCGTACCTCCTCCGTACCCCCCTTCGCT
CCGTGTCGTTCCCGATTTCGCGATGTGTGGTTGCATTGGGGGTCTCGGGC
ACGTTCCTTCCGGCTGGCGCTACCCGACTTTCGTTGCCTGGTGTGCAACG
TTACGATTACGTTGAAACCCGCTCACGGTCCAGAGGAGCCTTTCAAGAAG
AGTACCTAATAGCTTCCGGGTGATGCAGCCCGATGCTTGACCCGTTTGGG
ACATCCATCCCCAAAGTTGGTCGGAAAATGTGTGTGTTGTAGTCTAAACC
AATGGGTGCTTTTGCATGGCGCTCCATTTTATGTTTGGAATGAACCAATA
CATGCATGATTAGGGATGATCTTTCCAGTATTTATATTTCAATCGGTGAG
GATGGCGTGTTGTCGTGATTTTTGAGCCTTTGGAGTAAGATACCATCTGG
GTGGGCATGTCTTGTACATAATCACCTGCCGAGCTGTGTTCCGTATTGAT
GCAAGCAGCGGGCCATTCGCTGTTTGGTAGCAGCAAGCACGTTTGTATTT
AATTCTTCAGTGTTGCCTGGGATCGAGGGATGGCCAGTGATTACCAAGGG
ATGGGATAGGAAAGGAAATTAGACTGAAACAGAGCCACAACTCTACACAC
AATGGTCGGATTCCCTCCACAGTGAAAGATCGAGTCACATTTGGCCCCGG
CTTGGGATCCACGTGCGCAAGGGCTTTCTGGTTTTGGTCTGATTGAGATT
TTTTCTGGGTGTTGGGCGTCTGTCTTCCTTTTGTGCGCTTCCCTCGCTCT
TCAAAGGCAAAATGAAACCATCAGACTAAATAGTCCTG back to topCoding sequence (CDS) from alignment at Scaffold_68:142195..144882- >EsuBft1178_4a-0001 ID=EsuBft1178_4a-0001|Name=EsuBft1178_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=687bp|location=Sequence derived from alignment at Scaffold_68:142195..144882- (Ectocarpus subulatus male Bft15b)
ATGGAGAAGAGTGGGAGCCTCACAGAGTGGGTGTACGCGTTCCTGACCGA
TCCAGAGGACCTTACCATGGTGTCGACGGCAATACAGTTGTCCTACAGCT
GCATTACAAGTACATCCACCAGCCACGTCTTCAACTCGGTGGGAATCGGC
CTCACCAACCAGATTAAATATACCGGGGACATCATTTCTTCGTACAAGGC
TGTATCGATAAACTCCGGGGTGTACAAGGATCAGGCGGACGGTGACATCA
CCAAGCCATACGCCCGTTTGTCGATGGAGCTCAAGCAACAGTTTGACTCA
TGGGAGATCATCACAGAAGCGGACCCATTCGAATTCGCCGAGATTCTTGG
TAACATCGGAGGGTTTTGGGATCTGATCCTGATTTTATGGCCTTTGTTCT
TTGTGGCGGCCAGCCAGCCAGAACCAAATCTCAAGCCTCGCAACTTTGCG
AAATCGTTCACCAGGACAGTAGAGCGCTTCTCGGGCATGACGAAAACAGT
CGCCAACTCGGGGCCTATGAGGCGTATCGAATCTATCGAGATGAGAAACG
GAACGAGCGGTGCATCCCTGGAAGACGGCCTCCAAGAAGAGCCGGTGCCG
TGGGAACATCCACCCGCATTAGGGGTACAGAGGAGCCTTTCAAGAAGAGT
ACCTAATAGCTTCCGGGTGATGCAGCCCGATGCTTGA back to top
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