Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FP33 |
| ProteomeId | EsuBft1178_3 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 94 |
| Hectar predicted targeting category | signal anchor |
| Evalue | 1.3e-06 |
| EggNOG OGs | COG5021@1|root,KOG0940@2759|Eukaryota |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-19_000080.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | ubiquitin protein ligase activity |
| COG category | O |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1178_3a-0001 ID=EsuBft1178_3a-0001|Name=EsuBft1178_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=940bp|location=Sequence derived from alignment at Scaffold_68:144884..148490- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCAACACGCCTCCTACATTTTTTTTGTCTACAGGAAACCGGACGAGGT
AGTTCCAAATCACAGGCGGCGGGCTCGTGTGCTGTGGGCGATCATGATGG
TGGGAGTTATCACATATATCGGTTTGCTCGTGAAGAACACGGTGGAGAGA
ATGAAGTCTCCAAACACCTCTGTCGAGCTGTCGAACGTGGTGTACACGTA
CCCGGACCTCTGGGTGTGCCCATACAACCAGTATGGCTGCGATGATATCA
CCCTCGAGCTGGGATGTGTGACGTCGTCGTGGAGAACCGAGGCAGGCCCA
CCCAGCGCAATTTTCTATAACAGCGAGGGGACCGACCAACAAACGACAGA
CCCACTGGAGATCGAGGCTACCTGGGTCGACACGAGTGCCATAGAGGGGA
TCGCAAAAGCAAGAGAAGCATGGTCACGAATACGCTTGAGTTTGCTGTAG
TTTCGAAAGTCGAAAGCGTATTCGTGCATGGGTTGGAAAGGCCCAGCCAT
CTATGGGGTTTGAGTATAGAGGGTTTGGGGCTGACACACTTGAGGACATA
GCGGACGTGTCTTGTGGCCAACATTGGGCGTCGTCCGAACCTTCGAGCCC
AACCAACCATGGAGTATCCCGTGTGTATATCCCGGTCTCTATGTTCTGTT
GTTTGTGTGCGCTGTCTTTGGCAACATGAAGGCCCGTGCATGTCGATATG
CGATTGAAGCCATGAACCTGCTCGTTAGGTCCTCATAGTATGGCCCCTGA
AACACCTATAACACCCATTGTTTAGTCTATTGTCGTGCTTGGCGTCGCTA
TCCTTCAGGGGAGAGGACTCTGTGTGGAGTTCAACACATCGGCTGCGACC
GCTTTTGTTGGACAAGAGAGGGACCCCGACGAGTACTTGGACTACATCCT
CTTGGACATGTATTGGTACCCCAGCGGTAATGAGACGACG back to topprotein sequence of EsuBft1178_3a-0001 >EsuBft1178_3 ID=EsuBft1178_3|Name=EsuBft1178_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=149bp
MQHASYIFFVYRKPDEVVPNHRRRARVLWAIMMVGVITYIGLLVKNTVER
MKSPNTSVELSNVVYTYPDLWVCPYNQYGCDDITLELGCVTSSWRTEAGP
PSAIFYNSEGTDQQTTDPLEIEATWVDTSAIEGIAKAREAWSRIRLSLL back to topmRNA from alignment at Scaffold_68:144884..148490- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1178_3a-0001 ID=EsuBft1178_3a-0001|Name=EsuBft1178_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3607bp|location=Sequence derived from alignment at Scaffold_68:144884..148490- (Ectocarpus subulatus male Bft15b)
ATGCAACACGCCTCCTACATTTTTTTTGTCTACAGGAAACCGGACGAGGT
AGTTCCAAATCACAGGCGGCGGGCTCGTGTGCTGTGGGCGATCATGATGG
TGGGAGTTATCACATGTGAGCGCGCCTATCAAGAACGCTGAGCTATCCTG
CGAACGCTGTACACGAAATCAGCAAGACGGTATAGTAGACCTATTTCCCG
CCCTGTTCCTCTCTCCTTCTCCCTTTATTTGAAACGTTTCATAAACGGTT
AGTCTATTTATAAATTAACTGGTGTAGGGTTCGCTGCGCCGAACATTTTG
ATTCACGTGTCGCCTCTCAAGCAACGTGAATCGTCAGCGCCGGCGCGGTC
CTGCCGCAACCCAGTCTACAAACGGTAGACAGACGTAGAGTCTACAGTGG
TTTTGTGGAATCGAATACCAGTTTTTCTTGTTAAGTGTTTTTTACCCCAA
CAATTGAACTTTTTTGCCGCAAATGCATCCATACGTAGACAACATTGTGT
TACGCCCGCCTCCACCTGACGTCTCTCGGCGACAGTTTCAAGATCTAGCT
GGGCACACGGAAGAATATACGTGCAATGCTCACAATAGACAACATGTAGT
TGTTCCTGTCTTCGCGACGTCTCGATGGCAGTTACTAATGTGAGGATCTA
GCTTGGCACAAGGCGGGGTTTCTGGTTATTATCTGTCAAACCTTCATGCA
GTTCTCAGCAATACACATTGTTCCCGCCGCGGTGACGGTGGCTCTCTTAC
GACGTAAACACACATCATCCGGTAGGTATCCATGTTAGTACCAAAGCTTC
TGCGACCAATCGTCGGTCCTCGCGTGGAGATATGCAGTCTTTCGGTGACC
GCATGCTACGGGCTGTCGGCCCTTGCACGCTGAACGCATTGACGCGGCTC
GAACCGTATTGCTTCACCGTAGAGGGTCCTGTAGCGGCAGCATGCGTTCG
TCAAAGTTGCAGGTGTCACGGCCTTGTGTGCGCTGTATTCAGTCTACTTC
GTTGCGGTTCTGCTCGAGCAATAGTAGCAACGTTTGTGCGGACGACAAGC
CACGCTTTCATCGTTCGATACTCAGATTCGCCCCGGCCATCCCTGTTCGC
AAATCGGGAGCACTTTGTCCTATGTATCAGCGGATGGATAGGCTGTCTGA
GGCCCACAGGCTTCTGTGGCCCACAAACAACCCTCTTACCTGCTTGCGTG
TGTCTTCGCAGATATCGGTTTGCTCGTGAAGAACACGGTGGAGAGAATGA
AGTCTCCAAACACCTCTGTCGAGCTGTCGGTGAGATATACTGAGTTGCTG
ACCACATCCGTCATCGCCTACATCGATCCCCAGCATTCTTTGTTCCGTGG
CATGCCGGTTCAACTCAACGGTATGCGGGGGCTCCTCTCTGCCTCATGCG
TTACGTATTTGTAGACGACTGCCCGACAGTCCGCGGAGATGTGCTTAGAT
CGTGTCGCACTAACGCAGAACAAGGACAACGGCGAAAAGGGAGAAACGAT
GGAGAGTCAGTTCGACGACTTGAGCACCCACACCACTCCAGATGTAGAGC
CCCCACTCACGGCACTTCTGATACCACCGCTCGGACCGACACATACATGC
CAATTCGATTGGTTACGAGACCTACCAACAATCCGGACGGCGATACTGTT
TGGTTCACCTCGTCCAAGATCTTCCGGCGAACACAACGCTGGAATTGCCC
TCCTGGAATGTGCCGCGGGAACAATATCCGAGGGTGCGGATATTTTACCG
CCGGCTCACAGCAGTTGTGAATACCGTTCGAAGGAGGGGCACCGCAGACA
GTACTGGGAGACACAATCTGCTCACGTGTTCCGGCGTGTGTCATCAGCGA
CCGTGTGCTAATATGCGCAAGTGGGTCGTCAGACACCACGTGCTACAATG
TACAAGTACTCGTCAGAAAATCAACCGGGGCTCTACGGACGGCTGTATGT
CGTCCATCAAATCGACAGTGCACTACTCGCGCACCATCTCGCGAACTGGT
GAACCGCGGCATTTTTTTACCTGTTTCCCTTGTCGCTGTTTCCTCAACAC
GTCCCGCCGCCGTACAGAACGTGGTGTACACGTACCCGGACCTCTGGGTG
TGCCCATACAACCAGTATGGCTGCGATGATATCACCCTCGAGCTGGGATG
TGTGACGTCGTCGTGGAGAACCGAGGCAGGCCCACCCAGCGCAATTTTCT
ATAACAGCGAGGGGACCGACCAACAAACGACAGACCCACTGGAGATCGAG
GCTACCTGGGTCGACACGAGTGCCATAGAGGGGATCGCAAAAGCAAGAGA
AGCATGGTCACGAATACGCTTGAGTTTGCTGTAGTTTCGAAAGTCGAAAG
CGTATTCGTGCATGGGTTGGAAAGGCCCAGCCATCTATGGGGTTTGAGTA
TAGAGGGTTTGGGGCTGACACACTTGAGGACATAGCGGACGTGTCTTGTG
GCCAACATTGGGCGTCGTCCGAACCTTCGAGCCCAACCAACCATGGAGTA
TCCCGTGTGTATATCCCGGTCTCTATGTTCTGTTGTTTGTGTGCGCTGTC
TTTGGCAACATGAAGGCCCGTGCATGTCGATATGCGATTGAAGCCATGAA
CCTGCTCGTTAGGTCCTCATAGTATGGCCCCTGAAACACCTATAACACCC
ATTGTTTAGTCTATTGTCGTGCTTGGCGTCGCTATCCTTCAGGGGAGAGG
ACTCTGTGTGGAGTTCAACACATCGGCTGCGACCGCTTTTGTTGGACAAG
AGAGGGACCCCGACGAGTACTTGGACTACATCCTCTTGGACGTGAGGCGT
TGCTATTATGTCTCGTAGTCCCCGGATAACAAAACTATTGAATCCCCTCC
GTACGAAACGTTCGAACGTTTTTCACACGACGGCCCCATTTGCGTAGTTT
GGCGTGAGTGAGTAGGTCGTTTGCGATATCCTAGGACGGGCATATTGCGT
CCTGCGCAGATAGTGAGTGGGAGATGTTGCCCGCCACGCCCAGATCAAAT
GGTGTTATCATTGCAGCGGTGACCCCGGAGAAACTGTGGCTATGAACTAA
CCATTGTAGAACCCATACCAGGTTCCCGTCCTTTTCCCAAGCTGCTCTTA
CGCGAAGACACTGACAGTCCGGTCAACACGAGCTACTGTCCTCGATTCCA
TAGTGTTTCGGCTTTCCTGTAGGATTGGGTGATCAGGTCTGGATTTCGTC
CGCGTCGTTCAGCAACACGCGGGCTGGGGTGGAAACCACAAACATAGCGT
TGAACACCCGGACTGTTGTTCAGCTCTAGGGATCAATAGGTCACCTGCAA
GGCCGCAGGAGCCAACGACATCGACGTGACGCTGCCGTAGCTCCACAAGA
CCGGTCTTGTGCTAAGCCCGACGCGGACAAGCGAGGGGTCTTTTGATCGA
CCTGCTGTGGATGCGTCAAGACGTCCAGCCTCCAGTCCCATCACTGCTGC
GTGCCACGGATGTGGAAGGTATCTCGGGCCTCGTCGATATCATCCCTTCT
GTTAACAGACACTCTGGCATTGCTGCGGTCGAATTACCCAACAAACACGT
ACGCCCTTTGCCTGATTTGAGCAGATGTATTGGTACCCCAGCGGTAATGA
GACGACG back to topCoding sequence (CDS) from alignment at Scaffold_68:144884..148490- >EsuBft1178_3a-0001 ID=EsuBft1178_3a-0001|Name=EsuBft1178_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=450bp|location=Sequence derived from alignment at Scaffold_68:144884..148490- (Ectocarpus subulatus male Bft15b)
ATGCAACACGCCTCCTACATTTTTTTTGTCTACAGGAAACCGGACGAGGT
AGTTCCAAATCACAGGCGGCGGGCTCGTGTGCTGTGGGCGATCATGATGG
TGGGAGTTATCACATATATCGGTTTGCTCGTGAAGAACACGGTGGAGAGA
ATGAAGTCTCCAAACACCTCTGTCGAGCTGTCGAACGTGGTGTACACGTA
CCCGGACCTCTGGGTGTGCCCATACAACCAGTATGGCTGCGATGATATCA
CCCTCGAGCTGGGATGTGTGACGTCGTCGTGGAGAACCGAGGCAGGCCCA
CCCAGCGCAATTTTCTATAACAGCGAGGGGACCGACCAACAAACGACAGA
CCCACTGGAGATCGAGGCTACCTGGGTCGACACGAGTGCCATAGAGGGGA
TCGCAAAAGCAAGAGAAGCATGGTCACGAATACGCTTGAGTTTGCTGTAG back to top
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