EsuBft1168_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1168_9a-0001
Unique NameEsuBft1168_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:250294..252070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog164328.Phyra85923
ProteomeIdEsuBft1168_9
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon5
Max annot lvl4776|Peronosporales
Length1209
Hectar predicted targeting categoryother localisation
Evalue2.5e-23
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontransposition, RNA-mediated
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_9aEsuBft1168_9aEctocarpus subulatus male Bft15bgeneScaffold_444 250294..252070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_9a-0001EsuBft1168_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 250294..252070 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_9a-0001-exonagat-exon-7685Ectocarpus subulatus male Bft15bexonScaffold_444 250294..250376 +
EsuBft1168_9a-0001-exonagat-exon-7683Ectocarpus subulatus male Bft15bexonScaffold_444 250460..250965 +
EsuBft1168_9a-0001-exonagat-exon-7684Ectocarpus subulatus male Bft15bexonScaffold_444 251073..251449 +
EsuBft1168_9a-0001-exonEsuBft1168_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 251538..251740 +
EsuBft1168_9a-0001-exonagat-exon-7682Ectocarpus subulatus male Bft15bexonScaffold_444 252031..252070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_9a-0001-cdsEsuBft1168_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 250294..250376 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1168_9a-0001 ID=EsuBft1168_9a-0001|Name=EsuBft1168_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1209bp|location=Sequence derived from alignment at Scaffold_444:250294..252070+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTTTGTGCGCGAGGAGAC
GCCGGCGGCACCCGGCAACGGGATTCCGGGGACTGACGCCGGCGGTGCCG
GCGGCCCGGGCGGCGAAGATTGCGGCGACCCAGGTGGGGACGGCGGTAGC
GATGGTGATCCCGACTCCGAGAACCTCGAGGAGTTGAAGTATGATCCAGC
CGACGACCGCTACCCCCGCGGGCTAGAAGGGAAGAAACTCCTCTGGGGCG
CCTCCAACGCTGGGCCGCAGCGCCATGGGCTTGAGAGTGGCCGCACGCGG
AAGCAGACCCGGGAGATGCAAGGTGCAGGGGAGATGCCGGGGCCCGGAGA
AACACCGGACCCGGAAGAGGCACTGCTGGCGACCATCCTGGAAACTGGCG
TGACGGGGATTGTTGAGGACTACATCTGCAACTCGCTTGTGAAGGAGCAG
TGGGACGAGGAGCAGACACGCCATATGGAGGAGATGTACAGGCGTGAGGT
GCAGGAGGTGTTGGGCCCGGAAAAGCAGGCGTTCGGGGCCGAGGTCGACT
CCAGCGGGTTTTCGCAACCACTCCCAGACCCACAGCTAACATACATTGAG
AGTATGCCGAAGCGGTTTGATGTGAACACGACCGCTTTCACCCCTGCTGC
CACCGATGCCGACCTAGGGCCGAAGAGAGATGACGAGCCCGCGGTGGATA
AGCCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAGG
CCAGACATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCCCGCTCACC
CACGGGGAGGATATGGAACGCGCTTGTGCGAATCATATCCTACCTGAACT
TCACGAAGGACTTCGGCATCACCAACTTACGGGGGTCAGGACTATACCTA
AGCATGTTTGTCGATGCCAGCTACGCTGACAACGAATTAGACAGGCGTTC
TACGACCGGGCTAGCTGGCGTGAAGGAGGCGTTGTTTGTGCGTGGTATTC
TGTCGTTCATAGTGCCCGAGACAAGTGGGGCGAAGATCAAGGTCCTTGAG
GACAACGAGGGGGCTCTCGCCTTAATCGAGATTCCGTTCAGCTCAGCGAG
GAGCAAGCACATCGACGTGCGGTTCCATTTCCTTCGCGAGCTATTCAACT
CGGGCAAGATCACTGCAGAGAAGCGTTGTGCCGGCGCGTCACCCGCGGCT
GGAGCCTAG
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protein sequence of EsuBft1168_9a-0001

>EsuBft1168_9 ID=EsuBft1168_9|Name=EsuBft1168_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=402bp
MEARGPGQATPFVREETPAAPGNGIPGTDAGGAGGPGGEDCGDPGGDGGS
DGDPDSENLEELKYDPADDRYPRGLEGKKLLWGASNAGPQRHGLESGRTR
KQTREMQGAGEMPGPGETPDPEEALLATILETGVTGIVEDYICNSLVKEQ
WDEEQTRHMEEMYRREVQEVLGPEKQAFGAEVDSSGFSQPLPDPQLTYIE
SMPKRFDVNTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKLTR
PDIALPLNKLQKIARSPTGRIWNALVRIISYLNFTKDFGITNLRGSGLYL
SMFVDASYADNELDRRSTTGLAGVKEALFVRGILSFIVPETSGAKIKVLE
DNEGALALIEIPFSSARSKHIDVRFHFLRELFNSGKITAEKRCAGASPAA
GA
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mRNA from alignment at Scaffold_444:250294..252070+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1168_9a-0001 ID=EsuBft1168_9a-0001|Name=EsuBft1168_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1777bp|location=Sequence derived from alignment at Scaffold_444:250294..252070+ (Ectocarpus subulatus male Bft15b)
ATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTTTGTGCGCGAGGAGAC
GCCGGCGGCACCCGGCAACGGGATTCCGGGGACGTAGGCAGCGTTCCCCC
GTCGCCCCCTTCGGGAAGGGGGGACTTCGGCGGAGGCAGTGACAGCCCCA
CCGACAGCAGCAGCAGTGACGCCGGCGGTGCCGGCGGCCCGGGCGGCGAA
GATTGCGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTGATCCCGACTC
CGAGAACCTCGAGGAGTTGAAGTATGATCCAGCCGACGACCGCTACCCCC
GCGGGCTAGAAGGGAAGAAACTCCTCTGGGGCGCCTCCAACGCTGGGCCG
CAGCGCCATGGGCTTGAGAGTGGCCGCACGCGGAAGCAGACCCGGGAGAT
GCAAGGTGCAGGGGAGATGCCGGGGCCCGGAGAAACACCGGACCCGGAAG
AGGCACTGCTGGCGACCATCCTGGAAACTGGCGTGACGGGGATTGTTGAG
GACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGAC
ACGCCATATGGAGGAGATGTACAGGCGTGAGGTGCAGGAGGTGTTGGGCC
CGGAAAAGCAGGCGTTCGGGGCCGAGGTCGACTCCAGCGGGTTTTCGCAA
CCACTCCCAGACCCACAGCTAAGTATGACCTCGCCAATCGGGCAGAAGCC
GAGTGATGTGGAAGCAGTACCGATGACGTACAAGGATGTGATGTGTTTGA
AAATGGCATCACCAAGCTGTCCCAGACAGCATACATTGAGAGTATGCCGA
AGCGGTTTGATGTGAACACGACCGCTTTCACCCCTGCTGCCACCGATGCC
GACCTAGGGCCGAAGAGAGATGACGAGCCCGCGGTGGATAAGCCTGTGAG
GGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAGGCCAGACATCG
CCCTGCCTCTGAACAAGCTCCAGAAGATCGCCCGCTCACCCACGGGGAGG
ATATGGAACGCGCTTGTGCGAATCATATCCTACCTGAACTTCACGAAGGA
CTTCGGCATCACCAACTTACGGGGGTCAGGACTATACCTAAGCATGTTTG
TCGATGCCAGCTACGCTGACAACGAATTAGACAGGCGTTCTACGACCGGG
CTAGCTGTGACCGTTGGTGGTACACACATCCACCAAGACGCAGCCAGTGA
CGGCTCAGTCGACCTCGGAAGCAGAGTCTATGGCAGCCGGGGAGGGCGTG
AAGGAGGCGTTGTTTGTGCGTGGTATTCTGTCGTTCATAGTGCCCGAGAC
AAGTGGGGCGAAGATCAAGGTCCTTGAGGACAACGAGGGGGCTCTCGCCT
TAATCGAGATTCCGTTCAGCTCAGCGAGGAGCAAGCACATCGACGTGCGG
TTCCATTTCCTTCGCGAGCTATTCAACTCGGGCAAGATCACTGCAGAGTA
TGTTCCGACTGGAGCACGCCGACATGCTGACCAAGGTCCTTGGCAGAGGG
AAGTTAGAGTACCACCGGAAGGCTCTGATGAACCTACCGATGCAGTTCTC
TTGTTCGGTTTGGTTTATGTGGTGGTTTTAGCACGTGGCATATATGACCA
TGGTACGTCACATNGCAGAGGGAAGTTAGAGTACCACCGGAAGGCTCTGA
TGAACCTACCGATGCAGTTCTCTTGTTCGGTTTGGTTTATGTGGTGGTTT
TAGCACGTGGCATATATGACCATGGTACGTCACATAGGAAGCGTTGTGCC
GGCGCGTCACCCGCGGCTGGAGCCTAG
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Coding sequence (CDS) from alignment at Scaffold_444:250294..252070+

>EsuBft1168_9a-0001 ID=EsuBft1168_9a-0001|Name=EsuBft1168_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1209bp|location=Sequence derived from alignment at Scaffold_444:250294..252070+ (Ectocarpus subulatus male Bft15b)
ATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTTTGTGCGCGAGGAGAC
GCCGGCGGCACCCGGCAACGGGATTCCGGGGACTGACGCCGGCGGTGCCG
GCGGCCCGGGCGGCGAAGATTGCGGCGACCCAGGTGGGGACGGCGGTAGC
GATGGTGATCCCGACTCCGAGAACCTCGAGGAGTTGAAGTATGATCCAGC
CGACGACCGCTACCCCCGCGGGCTAGAAGGGAAGAAACTCCTCTGGGGCG
CCTCCAACGCTGGGCCGCAGCGCCATGGGCTTGAGAGTGGCCGCACGCGG
AAGCAGACCCGGGAGATGCAAGGTGCAGGGGAGATGCCGGGGCCCGGAGA
AACACCGGACCCGGAAGAGGCACTGCTGGCGACCATCCTGGAAACTGGCG
TGACGGGGATTGTTGAGGACTACATCTGCAACTCGCTTGTGAAGGAGCAG
TGGGACGAGGAGCAGACACGCCATATGGAGGAGATGTACAGGCGTGAGGT
GCAGGAGGTGTTGGGCCCGGAAAAGCAGGCGTTCGGGGCCGAGGTCGACT
CCAGCGGGTTTTCGCAACCACTCCCAGACCCACAGCTAACATACATTGAG
AGTATGCCGAAGCGGTTTGATGTGAACACGACCGCTTTCACCCCTGCTGC
CACCGATGCCGACCTAGGGCCGAAGAGAGATGACGAGCCCGCGGTGGATA
AGCCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAGG
CCAGACATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCCCGCTCACC
CACGGGGAGGATATGGAACGCGCTTGTGCGAATCATATCCTACCTGAACT
TCACGAAGGACTTCGGCATCACCAACTTACGGGGGTCAGGACTATACCTA
AGCATGTTTGTCGATGCCAGCTACGCTGACAACGAATTAGACAGGCGTTC
TACGACCGGGCTAGCTGGCGTGAAGGAGGCGTTGTTTGTGCGTGGTATTC
TGTCGTTCATAGTGCCCGAGACAAGTGGGGCGAAGATCAAGGTCCTTGAG
GACAACGAGGGGGCTCTCGCCTTAATCGAGATTCCGTTCAGCTCAGCGAG
GAGCAAGCACATCGACGTGCGGTTCCATTTCCTTCGCGAGCTATTCAACT
CGGGCAAGATCACTGCAGAGAAGCGTTGTGCCGGCGCGTCACCCGCGGCT
GGAGCCTAG
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