EsuBft1168_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1168_8a-0001
Unique NameEsuBft1168_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:257843..259217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1168_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length98
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_8aEsuBft1168_8aEctocarpus subulatus male Bft15bgeneScaffold_444 257843..259217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_8a-0001EsuBft1168_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 258282..258725 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_8a-0001-exonagat-exon-7681Ectocarpus subulatus male Bft15bexonScaffold_444 257843..257866 +
EsuBft1168_8a-0001-exonEsuBft1168_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 258262..259217 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_8a-0001-exonagat-five_prime_utr-1054Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_444 257843..257866 +
EsuBft1168_8a-0001-exonagat-five_prime_utr-1055Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_444 258262..258281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_8a-0001-cdsEsuBft1168_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 258282..258725 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_8a-0001-exonagat-three_prime_utr-1616Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 258726..259217 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1168_8a-0001 ID=EsuBft1168_8a-0001|Name=EsuBft1168_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=980bp|location=Sequence derived from alignment at Scaffold_444:257843..259217+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTGCGAAGCAGCAAGATGCGCAGCACGAGGAATTGCTGGACTCATGTCG
TCCACGTTCCGGACTCCTGCAGGAGGCGTTGTCATCCAATGGGACTCTTA
TAAAGAATTTTGGGAGTGTCTGCCCAATATCCCAGACGCGGCGAAGAGTC
TCGTAACCGACGCGCTGCCCACCTTGACGGAGCTGGTGGACTTCGCCAAA
GATAAAAATTTCGCGGCTACCTTGAAGGAAGCAGGAGTAGGGACGATTCC
CGCCACGCGGATTGCCAACTTTACCGAAAAGACTATTTATGACGCTAAGT
CGTTTTTTTTTCTGTCCTTTCTCAAACATGGGGTGCCTGCTTGCGTTTTC
GGCGGTAGCGTAGTGTTGCTTGAGTTACGGGGTTTGGTGATTGCTTTCAG
GGACGGGGATAGGAAGTCCGCGGTTTTGGGTGGGGAGTATGGGGACCGGG
CTGTTTCTCGAACCCAGCATGAGGTGGCTCTCGCGTAGTACTTGGAATGC
TTGCGCGGTTTACACGGTTTCTCGGCAAGTATCAACACGCGTACGTATAA
ATTATTGTGACGGGGGTTGAGGGGTTACGGGAACGGAGAGAGGGGACTAC
ATTGTGCTTTTTATTTAAATTACGTGTCACATTTTCTAGCGAGGCAGCTG
TTGAAATACAACGATCCTCATAGAAGGGGTAGTTCGACTTGGAGGAGGTG
GCCTCGATAGCAAGAGAGTTTTTCATGTCGATACTTGCCAAAATTTCGTG
TCCACGTACACTGTGATCGCGTGTTCGATACCCCCGGCCCCATAACACGA
ACGTATGAAGCACATTTTGGGGGGTTGTAAGCTGTGACATAGACTGTTTC
GGCAGGCGACTTGGGCAATCCGTCTCAACATGCGTGGTTCGTGCTTTGTT
GCGAAGTTTGCATTACTCCGAAGGTGCATTACTCCAAAGGCTTTGTTTCG
GTCGCGGTACTTTTACACGACAATTAAAAA
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protein sequence of EsuBft1168_8a-0001

>EsuBft1168_8 ID=EsuBft1168_8|Name=EsuBft1168_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=147bp
MSSTFRTPAGGVVIQWDSYKEFWECLPNIPDAAKSLVTDALPTLTELVDF
AKDKNFAATLKEAGVGTIPATRIANFTEKTIYDAKSFFFLSFLKHGVPAC
VFGGSVVLLELRGLVIAFRDGDRKSAVLGGEYGDRAVSRTQHEVALA
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mRNA from alignment at Scaffold_444:257843..259217+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1168_8a-0001 ID=EsuBft1168_8a-0001|Name=EsuBft1168_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1375bp|location=Sequence derived from alignment at Scaffold_444:257843..259217+ (Ectocarpus subulatus male Bft15b)
CGTGCGAAGCAGCAAGATGCGCAGGTAAATGTCGCCATGGTTCGGCTCCA
GTGCTCGTTCCGAACGACGCTAAGGGTTGCGTTGGTGACTCGCATCATGC
GTCGGGTCGTTGGTACCTCACAAAATAGATTGGACGCCCCGCGTTTTCCG
AGTTTGGGGTGTATCTAGCAGAGGACACGACCCGCGATATGCATTACCCC
TAACCCAGTTGATTGAAAAGCGTAGGCAAGCCTGTACGCTCTGTGGGCTG
AGTGCATGCATACCCCCGGAGTTGTCTCCCGCATTCGGGCCCACATCACG
TAGTTTGATTAGTCTCTCCTTGTCGCTTCCACATCTCACATTAATATTGT
TTGCTCTTGGTTCGATGTACTGCCCCCCTTTGCTTAAACCGCATGGTCTG
CAACCCGTTCGAAAAACAGCACGAGGAATTGCTGGACTCATGTCGTCCAC
GTTCCGGACTCCTGCAGGAGGCGTTGTCATCCAATGGGACTCTTATAAAG
AATTTTGGGAGTGTCTGCCCAATATCCCAGACGCGGCGAAGAGTCTCGTA
ACCGACGCGCTGCCCACCTTGACGGAGCTGGTGGACTTCGCCAAAGATAA
AAATTTCGCGGCTACCTTGAAGGAAGCAGGAGTAGGGACGATTCCCGCCA
CGCGGATTGCCAACTTTACCGAAAAGACTATTTATGACGCTAAGTCGTTT
TTTTTTCTGTCCTTTCTCAAACATGGGGTGCCTGCTTGCGTTTTCGGCGG
TAGCGTAGTGTTGCTTGAGTTACGGGGTTTGGTGATTGCTTTCAGGGACG
GGGATAGGAAGTCCGCGGTTTTGGGTGGGGAGTATGGGGACCGGGCTGTT
TCTCGAACCCAGCATGAGGTGGCTCTCGCGTAGTACTTGGAATGCTTGCG
CGGTTTACACGGTTTCTCGGCAAGTATCAACACGCGTACGTATAAATTAT
TGTGACGGGGGTTGAGGGGTTACGGGAACGGAGAGAGGGGACTACATTGT
GCTTTTTATTTAAATTACGTGTCACATTTTCTAGCGAGGCAGCTGTTGAA
ATACAACGATCCTCATAGAAGGGGTAGTTCGACTTGGAGGAGGTGGCCTC
GATAGCAAGAGAGTTTTTCATGTCGATACTTGCCAAAATTTCGTGTCCAC
GTACACTGTGATCGCGTGTTCGATACCCCCGGCCCCATAACACGAACGTA
TGAAGCACATTTTGGGGGGTTGTAAGCTGTGACATAGACTGTTTCGGCAG
GCGACTTGGGCAATCCGTCTCAACATGCGTGGTTCGTGCTTTGTTGCGAA
GTTTGCATTACTCCGAAGGTGCATTACTCCAAAGGCTTTGTTTCGGTCGC
GGTACTTTTACACGACAATTAAAAA
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Coding sequence (CDS) from alignment at Scaffold_444:257843..259217+

>EsuBft1168_8a-0001 ID=EsuBft1168_8a-0001|Name=EsuBft1168_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=444bp|location=Sequence derived from alignment at Scaffold_444:257843..259217+ (Ectocarpus subulatus male Bft15b)
ATGTCGTCCACGTTCCGGACTCCTGCAGGAGGCGTTGTCATCCAATGGGA
CTCTTATAAAGAATTTTGGGAGTGTCTGCCCAATATCCCAGACGCGGCGA
AGAGTCTCGTAACCGACGCGCTGCCCACCTTGACGGAGCTGGTGGACTTC
GCCAAAGATAAAAATTTCGCGGCTACCTTGAAGGAAGCAGGAGTAGGGAC
GATTCCCGCCACGCGGATTGCCAACTTTACCGAAAAGACTATTTATGACG
CTAAGTCGTTTTTTTTTCTGTCCTTTCTCAAACATGGGGTGCCTGCTTGC
GTTTTCGGCGGTAGCGTAGTGTTGCTTGAGTTACGGGGTTTGGTGATTGC
TTTCAGGGACGGGGATAGGAAGTCCGCGGTTTTGGGTGGGGAGTATGGGG
ACCGGGCTGTTTCTCGAACCCAGCATGAGGTGGCTCTCGCGTAG
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