EsuBft1168_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1168_7a-0001
Unique NameEsuBft1168_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:259590..262422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1168_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length208
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_7aEsuBft1168_7aEctocarpus subulatus male Bft15bgeneScaffold_444 259590..262422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_7a-0001EsuBft1168_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 261760..262422 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_7a-0001-exonagat-exon-7678Ectocarpus subulatus male Bft15bexonScaffold_444 259590..260933 -
EsuBft1168_7a-0001-exonagat-exon-7680Ectocarpus subulatus male Bft15bexonScaffold_444 261232..261363 -
EsuBft1168_7a-0001-exonagat-exon-7679Ectocarpus subulatus male Bft15bexonScaffold_444 261725..262157 -
EsuBft1168_7a-0001-exonEsuBft1168_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 262251..262422 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_7a-0001-exonagat-three_prime_utr-1613Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 259590..260933 -
EsuBft1168_7a-0001-exonagat-three_prime_utr-1614Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 261232..261363 -
EsuBft1168_7a-0001-exonagat-three_prime_utr-1615Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 261725..261759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_7a-0001-cdsEsuBft1168_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 261760..262157 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1168_7a-0001 ID=EsuBft1168_7a-0001|Name=EsuBft1168_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2081bp|location=Sequence derived from alignment at Scaffold_444:259590..262422- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCAGCGGAAGAAAAGCATCAACTTCTCCACCGCCGCAGCTCTCGG
CGATGATGACGACGACGTAGAGGACGAAGAGGAAGAGCAACCAAGACGTA
CCAGCAACAAAACCCGGTTCGAAGCTTTCACCGCCGCGGCGACGACGCGC
TCGCCTGCTGTGGTGGACAGTCGGGTAACAGCGCCGCGAACGACACTGCC
AGTCAGGCACGTCTGCCCCTTCAGGTTCACTAGCGAGGAGGGTGGGATCT
ATGATGCCCACAGTAGCAGCCAGATTCGTTACAAAACAGGGATGGAGAAG
GACGAGTTCGACGCCTTTTACGAAGACACGTTCCTGGATCCTGAGGGAAA
CCGTCTCGCCCGCTCATGGCTGTTTGGGCAAGCTCGGAACCACCTTGGAA
ACTACTCGGCGGAGGACAACAAGGCCAGGCGGGTCATCCGGGGGAGCATG
GATGGCAGAGACCGATTTTTGTGCTGGCTGGAGATGCTCAGGAGGGACAC
TTGTTCGAGGACATGGCCCCCGAATATGGACGGTGTGCTGGGACGTATCA
CAACGACTTCAAGGACATGACGGCGGCCGCGCAGAACATGCATTGTCTGC
AAGAGGAGATCCAATGTCCTGACGCAGCGGAGCGGGCCGCTCATTGCACT
TTCCTTCAAACCTGGGGTCATCCGGATTTCCCTGGTGTAGCTTACATCGC
CGACGGCACCATGGTGAACATGTGAAACCCTGCCAAGGTCGGCAAGGGAC
AACCAGAGCCTCACGCCCCGGTGCATCAGGCGAACTACTCCGGTAACAAG
GGCCTTGGAACTAGCCATATCGTCTACTGCAACGTCAGGGGCAAACCGAT
ACGGGTGCGTCGTATACTTCGATCGGAGTCCCAAATGCTAACTCGTCTTG
AGGAGCTCACTCGAGTTGCGACCCTCGCTCCACCAGGACCGTTCTGTTGT
CAATCGCTCAAAAATGTCTACTGGAGTAGACGTGCTTCCATCAGTATTGT
GTGTTGTGCGACCGTAACGTTATTCCAGTGCGCTTGGAAATGCAAGTCGG
AATTCCGTGGCGCATGTTGAAGTGCTAACAAAAAGTTAGTTGGAATGAGG
GGTGGGGGGGGCGTTCTACTCGACATACCGATATGCGCCGGCAAAGTACC
CTCGGTGACGTGAGTTTCGGGAAAAATCTTTGTCCGCGCAAAGCGTCAAG
CACCCAGACGAAGATTGGCATTAACCACATAGGCTGATTCGTATGTAGAT
TGCCGTATAGTTTAGGGTGAAGCGTTTTTCTACCTTTCGTACAAATAGTG
GAGCACATGACAAGGAACCCGCCACCTTTGTCCCCCTGTTGTCCTGGCGG
GTGTGAAAACGTTGTGCAGATTGAGACGGTGGCTGGAGCGCAATTGGACA
GGGGAGCACATGTCGCTTCTAGGGTGTACACTCATCCTGAGGAGTTCCTG
TTAGCCGACGAGGTCGGTATGGGGGACGGTGCTTACCTAGGGAACGCGCG
AGCAGACAACGACTTGCCCATGTGCGTACCCTTCAGGAAGCCGCAACAGG
GGGATCTTTCTAATGAAGAGAGGCGGTTCAACACAGAGCAGCGGCGTTTC
AGGGTCATGGTAGAGAACGCCATAGGCCAGATTAAGTAGTGGAAGGTAGT
GGGCAATGGCAAGGCTTTTAGGCACCGACGGGACTTCGAGAAAGACGTCT
TCAACGTGTGCGCTAGGCTCACAGCTCGGATCATGAGGGTTCGGGACAGG
TATCCGCGCAGCCCGGAGTGGACTGGACGCGTGAAGGAGGCCTGGGAGGT
GAAGCTCGGAATCCACCTCTACTGGGACTACGAGGACCCGAAAAGCTATC
TTGTCCACAACGAGGGAGAGAGCTACGTGTATGGCGTCGCGAATGAAGCA
ACCGCTCAGCATCTGCAGCAGTGTCGGTATAGCATTTGGGCGCTTGAAAT
CTAATAGGCGAACATAGCGCCGGTCGTGGTTGTTTTTCACCTACATGTAG
GAAATCTACCTGACGGGCGGATGGGGTCGGACGCCGGCTGGCGTGAACCA
GCAGGGTTTAATGGTGTATGCTATTCTACGT
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protein sequence of EsuBft1168_7a-0001

>EsuBft1168_7 ID=EsuBft1168_7|Name=EsuBft1168_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=189bp
MYQRKKSINFSTAAALGDDDDDVEDEEEEQPRRTSNKTRFEAFTAAATTR
SPAVVDSRVTAPRTTLPVRHVCPFRFTSEEGGIYDAHSSSQIRYKTGMEK
DEFDAFYEDTFLDPEGNRLARSWLFGQARNHLGNYSAEDNKARRVIRGSM
DGRDRFLCWLEMLRRDTCSRTWPPNMDGVLGRITTTSRT
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mRNA from alignment at Scaffold_444:259590..262422-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1168_7a-0001 ID=EsuBft1168_7a-0001|Name=EsuBft1168_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2833bp|location=Sequence derived from alignment at Scaffold_444:259590..262422- (Ectocarpus subulatus male Bft15b)
ATGTACCAGCGGAAGAAAAGCATCAACTTCTCCACCGCCGCAGCTCTCGG
CGATGATGACGACGACGTAGAGGACGAAGAGGAAGAGCAACCAAGACGTA
CCAGCAACAAAACCCGGTTCGAAGCTTTCACCGCCGCGGCGACGACGCGC
TCGCCTGCTGTGGTGGACAGTCGTGATGCTGACGAGTTGGAGGAGGATAT
GCGAGGGGTCTAACCTATCGGCATACACTGAAGAAGCTCGGACCTCAACT
CCCTGGCATCGGCAGGGGTAACAGCGCCGCGAACGACACTGCCAGTCAGG
CACGTCTGCCCCTTCAGGTTCACTAGCGAGGAGGGTGGGATCTATGATGC
CCACAGTAGCAGCCAGATTCGTTACAAAACAGGGATGGAGAAGGACGAGT
TCGACGCCTTTTACGAAGACACGTTCCTGGATCCTGAGGGAAACCGTCTC
GCCCGCTCATGGCTGTTTGGGCAAGCTCGGAACCACCTTGGAAACTACTC
GGCGGAGGACAACAAGGCCAGGCGGGTCATCCGGGGGAGCATGGATGGCA
GAGACCGATTTTTGTGCTGGCTGGAGATGCTCAGGAGGGACACTTGTTCG
AGGACATGGCCCCCGAATATGGACGGTGTGCTGGGACGTATCACAACGAC
TTCAAGGACATGACGGCGGCCGCGCAGAACATGCATTGTCTGCAAGAGGT
GAGAGTGCATGCATTGATTTGCAGTTGTATTCTACAAAACACAAAATTGA
CTCATGATACGCTGAAGAATTCGGAGTGGGAAGTGATATTTGGCATGACT
CGAGGGATTACAGCCATGCGTACACCTCGTGTTACTGCAGAACCGTCAGC
GGAAACAGGCCGACGCTCGACACCAGCACCAGCCCGTCACGATCCCACCG
CAATGTGCCATCAATCTCTTAATCTGACGCGTACACGCTCCCTGTCAGCG
CGTGGAGGAGTTGTGTAAGGAGAGTCTGCTATGCGCGATAAGTTCATACT
GTATTTCAAGATGAAGTTGACACATAGGTTCTCTAGGCTTCCATGGTCGT
GTGGTACAGGAGATCCAATGTCCTGACGCAGCGGAGCGGGCCGCTCATTG
CACTTTCCTTCAAACCTGGGGTCATCCGGATTTCCCTGGTGTAGCTTACA
TCGCCGACGGCACCATGGTGAACATGTGAAACCCTGCCAAGGTAGGACTT
AAAAGGCTAGCACCTACGTTGGTTGCTCATGTGTGACATGCATAACGTGG
GTAAAAACTTGCTTAGTGTTTTTCGCAGGGTATCTCGAAAGAATGGATAT
GCATTAGCCCGTGCGGATTGTCTGTCTATGCGACGTTGGTTTTCCAGACC
TGTGCTGGTTGCGATGGGCTCTGTTGGTAGGCCGCTCTCCCCCCTCTTTA
CCCTATGCTACAGTTTGAACTATTCGCCTTTCGTGCGCATGCGGGGCATT
TGTTCACACTCTCTCGCCCGCCGCTTGAATCCCGTGCAGGTCGGCAAGGG
ACAACCAGAGCCTCACGCCCCGGTGCATCAGGCGAACTACTCCGGTAACA
AGGGCCTTGGAACTAGCCATATCGTCTACTGCAACGTCAGGGGCAAACCG
ATACGGGTGCGTCGTATACTTCGATCGGAGTCCCAAATGCTAACTCGTCT
TGAGGAGCTCACTCGAGTTGCGACCCTCGCTCCACCAGGACCGTTCTGTT
GTCAATCGCTCAAAAATGTCTACTGGAGTAGACGTGCTTCCATCAGTATT
GTGTGTTGTGCGACCGTAACGTTATTCCAGTGCGCTTGGAAATGCAAGTC
GGAATTCCGTGGCGCATGTTGAAGTGCTAACAAAAAGTTAGTTGGAATGA
GGGGTGGGGGGGGCGTTCTACTCGACATACCGATATGCGCCGGCAAAGTA
CCCTCGGTGACGTGAGTTTCGGGAAAAATCTTTGTCCGCGCAAAGCGTCA
AGCACCCAGACGAAGATTGGCATTAACCACATAGGCTGATTCGTATGTAG
ATTGCCGTATAGTTTAGGGTGAAGCGTTTTTCTACCTTTCGTACAAATAG
TGGAGCACATGACAAGGAACCCGCCACCTTTGTCCCCCTGTTGTCCTGGC
GGGTGTGAAAACGTTGTGCAGATTGAGACGGTGGCTGGAGCGCAATTGGA
CAGGGGAGCACATGTCGCTTCTAGGGTGTACACTCATCCTGAGGAGTTCC
TGTTAGCCGACGAGGTCGGTATGGGGGACGGTGCTTACCTAGGGAACGCG
CGAGCAGACAACGACTTGCCCATGTGCGTACCCTTCAGGAAGCCGCAACA
GGGGGATCTTTCTAATGAAGAGAGGCGGTTCAACACAGAGCAGCGGCGTT
TCAGGGTCATGGTAGAGAACGCCATAGGCCAGATTAAGTAGTGGAAGGTA
GTGGGCAATGGCAAGGCTTTTAGGCACCGACGGGACTTCGAGAAAGACGT
CTTCAACGTGTGCGCTAGGCTCACAGCTCGGATCATGAGGGTTCGGGACA
GGTATCCGCGCAGCCCGGAGTGGACTGGACGCGTGAAGGAGGCCTGGGAG
GTGAAGCTCGGAATCCACCTCTACTGGGACTACGAGGACCCGAAAAGCTA
TCTTGTCCACAACGAGGGAGAGAGCTACGTGTATGGCGTCGCGAATGAAG
CAACCGCTCAGCATCTGCAGCAGTGTCGGTATAGCATTTGGGCGCTTGAA
ATCTAATAGGCGAACATAGCGCCGGTCGTGGTTGTTTTTCACCTACATGT
AGGAAATCTACCTGACGGGCGGATGGGGTCGGACGCCGGCTGGCGTGAAC
CAGCAGGGTTTAATGGTGTATGCTATTCTACGT
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Coding sequence (CDS) from alignment at Scaffold_444:259590..262422-

>EsuBft1168_7a-0001 ID=EsuBft1168_7a-0001|Name=EsuBft1168_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=570bp|location=Sequence derived from alignment at Scaffold_444:259590..262422- (Ectocarpus subulatus male Bft15b)
ATGTACCAGCGGAAGAAAAGCATCAACTTCTCCACCGCCGCAGCTCTCGG
CGATGATGACGACGACGTAGAGGACGAAGAGGAAGAGCAACCAAGACGTA
CCAGCAACAAAACCCGGTTCGAAGCTTTCACCGCCGCGGCGACGACGCGC
TCGCCTGCTGTGGTGGACAGTCGGGTAACAGCGCCGCGAACGACACTGCC
AGTCAGGCACGTCTGCCCCTTCAGGTTCACTAGCGAGGAGGGTGGGATCT
ATGATGCCCACAGTAGCAGCCAGATTCGTTACAAAACAGGGATGGAGAAG
GACGAGTTCGACGCCTTTTACGAAGACACGTTCCTGGATCCTGAGGGAAA
CCGTCTCGCCCGCTCATGGCTGTTTGGGCAAGCTCGGAACCACCTTGGAA
ACTACTCGGCGGAGGACAACAAGGCCAGGCGGGTCATCCGGGGGAGCATG
GATGGCAGAGACCGATTTTTGTGCTGGCTGGAGATGCTCAGGAGGGACAC
TTGTTCGAGGACATGGCCCCCGAATATGGACGGTGTGCTGGGACGTATCA
CAACGACTTCAAGGACATGA
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