EsuBft1168_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1168_6a-0001
Unique NameEsuBft1168_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:263951..264482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIA9
ProteomeIdEsuBft1168_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length28
Hectar predicted targeting categoryother localisation
Evalue1.09e-21
EggNOG OGs2D5KK@1|root,2SYVY@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_6aEsuBft1168_6aEctocarpus subulatus male Bft15bgeneScaffold_444 263951..264482 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_6a-0001-exonagat-exon-7677Ectocarpus subulatus male Bft15bexonScaffold_444 263951..263980 -
EsuBft1168_6a-0001-exonEsuBft1168_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 264225..264482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_6a-0001-cdsEsuBft1168_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 263951..263980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1168_6a-0001EsuBft1168_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 263951..264482 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1168_6a-0001 ID=EsuBft1168_6a-0001|Name=EsuBft1168_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=288bp|location=Sequence derived from alignment at Scaffold_444:263951..264482- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGAAGGGTGTTTCCAGAGGAAAAGTGGCAAGAGATTCTCGGTAC
CCCGGCAACGGCGTCAGAGAAGATGCGGGAGTTTATCCTGTACTTCGTCA
AGAAGGACAAGACGAAGAAGAGATCGACCAAAAATAAGATCTTCTCCATC
CCGGCTGTAAACACAGAGAACAAGTCGACGAGGAGCAAGGGGAGGTCGTC
AAAGCTGAAGGATACAGTTGGCAACGCCTACGCGGGGGGGCAAGAGATGA
AGTCGGTGAGGGAATGGAGGACTCCAGAATATCTGTAG
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protein sequence of EsuBft1168_6a-0001

>EsuBft1168_6 ID=EsuBft1168_6|Name=EsuBft1168_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=95bp
MDGRVFPEEKWQEILGTPATASEKMREFILYFVKKDKTKKRSTKNKIFSI
PAVNTENKSTRSKGRSSKLKDTVGNAYAGGQEMKSVREWRTPEYL
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mRNA from alignment at Scaffold_444:263951..264482-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1168_6a-0001 ID=EsuBft1168_6a-0001|Name=EsuBft1168_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=532bp|location=Sequence derived from alignment at Scaffold_444:263951..264482- (Ectocarpus subulatus male Bft15b)
ATGGACGGAAGGGTGTTTCCAGAGGAAAAGTGGCAAGAGATTCTCGGTAC
CCCGGCAACGGCGTCAGAGAAGATGCGGGAGTTTATCCTGTACTTCGTCA
AGAAGGACAAGACGAAGAAGAGATCGACCAAAAATAAGATCTTCTCCATC
CCGGCTGTAAACACAGAGAACAAGTCGACGAGGAGCAAGGGGAGGTCGTC
AAAGCTGAAGGATACAGTTGGCAACGCCTACGCGGGGGGGCAAGAGATGA
AGTCGGTGGTCCTGAACATCTGGGATATAATAGAACAACCTCTCATTCCT
CTCTTCCCACATACTTTTCCTCGCTCTTTGTCTTTTTGTCCTTTTTTTCT
CTCTTTTTGTCTTTTTCTCTCTTTTCTATGCGAGATGGCCTTGTCTCTGC
TTGCGTTGTGATGTACAAAGACTGAACCAAGGGGTGTACCTCATTCTCTC
TGGCCCGTGATGGTGTCCCTAGTCTCAGTTGTTACCTCGTGCAAGCGCGC
AGAGGGAATGGAGGACTCCAGAATATCTGTAG
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Coding sequence (CDS) from alignment at Scaffold_444:263951..264482-

>EsuBft1168_6a-0001 ID=EsuBft1168_6a-0001|Name=EsuBft1168_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=288bp|location=Sequence derived from alignment at Scaffold_444:263951..264482- (Ectocarpus subulatus male Bft15b)
ATGGACGGAAGGGTGTTTCCAGAGGAAAAGTGGCAAGAGATTCTCGGTAC
CCCGGCAACGGCGTCAGAGAAGATGCGGGAGTTTATCCTGTACTTCGTCA
AGAAGGACAAGACGAAGAAGAGATCGACCAAAAATAAGATCTTCTCCATC
CCGGCTGTAAACACAGAGAACAAGTCGACGAGGAGCAAGGGGAGGTCGTC
AAAGCTGAAGGATACAGTTGGCAACGCCTACGCGGGGGGGCAAGAGATGA
AGTCGGTGAGGGAATGGAGGACTCCAGAATATCTGTAG
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