EsuBft1167_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1167_2a-0001
Unique Name	EsuBft1167_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_370	contig	Scaffold_370:298348..302996 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FZ45
ProteomeId	EsuBft1167_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	357
Evalue	2.27e-42
EggNOG OGs	2AWDH@1\|root,2RZYI@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
Description	DDE superfamily endonuclease
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1167_2a	EsuBft1167_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_370 298348..302996 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1167_2a-0001	EsuBft1167_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_370 298355..298889 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1167_2a-0001-exon	agat-exon-69114	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 298348..298465 +
EsuBft1167_2a-0001-exon	agat-exon-69113	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 298734..301198 +
EsuBft1167_2a-0001-exon	agat-exon-69115	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 301486..302373 +
EsuBft1167_2a-0001-exon	EsuBft1167_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 302895..302996 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1167_2a-0001-exon	agat-five_prime_utr-1041	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_370 298348..298354 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1167_2a-0001-cds	EsuBft1167_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_370 298355..298465 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1167_2a-0001-exon	agat-three_prime_utr-1601	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_370 298890..301198 +
EsuBft1167_2a-0001-exon	agat-three_prime_utr-1602	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_370 301486..302373 +
EsuBft1167_2a-0001-exon	agat-three_prime_utr-1603	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_370 302895..302996 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:298348..302996+
coding sequence from alignment at Scaffold_370:298348..302996+

spliced messenger RNA

>EsuBft1167_2a-0001 ID=EsuBft1167_2a-0001|Name=EsuBft1167_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3573bp|location=Sequence derived from alignment at Scaffold_370:298348..302996+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTACGCGATGGCCCGTCTGGAACTCGACGACACGCCCACGAGTATCGCAC
GTAGGGACGCGACAGCATTCGTCAGCCCACAGGACTGCGTCGTCTTTCTA
CTTTTCACGCAATCGCAAGTTATGCTGATGCTGGATCTGCTGTTGATCCC
CGCGTTCATCCCAACTGACTGTGGGTTCTTGGTAAGCGGACGGGAAGTTC
TGTGCGTGCTCCTGTGTCGGCTCTCTTTCCCATGCCGCCTGAAGGACATG
CGCTTGGTTTTCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNAAAACGCGCAAGGCGCAACGGATGCC
ACGATACTTTTTTGAAGAGCCTGCTGAAGAAAAAAGAAAACACATGCAAC
GCATGCCCTAGCAACTGAAGCAGCAGCAAGGGCGAAAACCCATTCCCTAT
TTTCCCTACCGCGAACAAGCAAGCCCCCCCGAAAAAAACGCACAAGGCGC
AACGGATGCCACGATACGTTTTTGAAGAGCCTGCTGTTGAAAAAAAAAAA
AATGCAACGCATGCCCTAGCAGCTGCAGCAACAGCAACCCCAACCTGGCT
AGTTATTCTTGCCCTTCGCCTTTGCCAGGTCTACCTGGAGTTGCATCATC
CTGATTTGGTGATCACGATCTGCCTTTTGCTCTCCCCGTGCAGCCGCCCT
CTCCACTTCACGCTCTTGCCTGTCGTGTTTCCTTTCATCTTCTCGCATTG
CCCTCTCGTGGGCCATCATGTCCAGGAGCTCTTTCCTCCTCCCTAGTTCT
CGTTTATCTTCCGCCGCCCGCCTCCTCTCGTCCTCTTGACGTTTCTGATC
GGCGAGTGTCCGAGCGTCAGCCACCTGTCGCTCCATGAAGCTGGACACGT
GGCACGACGGCGCAAGAGAGGAACCAGAGTAGGGACCGGGGATGGATGTC
TGACCGGCGGCGGACAGCCCAGAGTTCGTCACGCCGGCGCCGAGCACCAA
CAACCTCGCTACCTGCTTCATGACCTGAAGCACCTTGTCCGGCGTAACAC
GTTCTATGGGCCATCCGCCGTGAAACCAGTTCGAATCCGGCAGGCTGCGG
AAGTCCATCATTTCCACGCCGTAGAGCTCGAGCAGATCAATTATGACCGA
CTCGTCAAACCTTTCAAACCCGGGCAGCTGCATATCCTCGTCACCACCAA
CATCATCCATCAAGTCCTGGACGCTGTCTCCGTTGCGCTGAAGACTAAGC
CTTTTGTCGAGTAGTACCGTCATCATGGCCACGGCCCTTTCCGGCTGAAC
TTCGTCAGGCGTGAAGCCCGTGTTGAGGAAGTAGTCCGCCTCCTCCGTGG
TGACCCCGGCACTTTGCGCAAGCGTCGAAATGCTCAGCGACCCCAGGTGC
TTCACCAATTCGCCAAGCGGCGGAGCCTTCCTCGATGGCCCGCTCCCCGC
GGGCGATAAGTCATCGTCTATCCCGCCCATACTCATGGTCGGGCTTGATC
CACCGCTGGCAGCGCCACCCGCCGAAGCCTCCGACGCGGGCCTCGCCCCC
CCGATGCTGCTGGCCGAACTCACCCGACCGCTGGCACGGCCACCAGCCGC
TGCACCGGAGCGGGAACCCAACGCGATGTTGTCGGCGGCAACAGCTTCTT
CGAATGATGTAGCCTTCGCGCCCGGCCCGCATCAGGCGTTGCCCTGGTTG
ATGGCCCACGTCCCCATCGCGGAGTGCGAGGCCGCCTTGTCGGCTTTCTT
TAGCTTGGTCTCCTCCGAGTCCTACCTCGCGGCAGCCTTCGCGTCCACTA
TCGCGGTCAGAACTTTGTCCTCAGCTGGATCTTGGTATTCTTCTCTCCCG
CGTCCTCCGAACCACTCTCAGCAGTGCCGGCTCCGGAGTCCCGCTGGGCC
TTACCATCGCGCTTGCTCTGGTC

protein sequence of EsuBft1167_2a-0001

>EsuBft1167_2 ID=EsuBft1167_2|Name=EsuBft1167_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=89bp
MARLELDDTPTSIARRDATAFVSPQDCVVFLLFTQSQVMLMLDLLLIPAF
IPTDCGFLVSGREVLCVLLCRLSFPCRLKDMRLVFGXXX

mRNA from alignment at Scaffold_370:298348..302996+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1167_2a-0001 ID=EsuBft1167_2a-0001|Name=EsuBft1167_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4649bp|location=Sequence derived from alignment at Scaffold_370:298348..302996+ (Ectocarpus subulatus male Bft15b)
CTACGCGATGGCCCGTCTGGAACTCGACGACACGCCCACGAGTATCGCAC
GTAGGGACGCGACAGCATTCGTCAGCCCACAGGACTGCGTCGTCTTTCTA
CTTTTCACGCAATCGCAAGTGAGTGCATGTGGCAGCTAAATATATCGTTT
CTGTGGCTCGGAGACGTGTACTCCGGCTATCAGCAACAGCAGCAGTGTGT
CAGCATATCGTACAACAGCAGCAGCAGCAGCAGTATGTCAGCATCCCCTG
GGTCGCGGGGGGTTAGCCGTTCTGGGTGCGTCAAACCTGTGCTATGTTAG
ACCCACATGCCTACGGAGAAGTGTGCACTGGACTAACAAGTAACACATCG
TTCTTTGCTTTCCTGTGTGGTGTTCACGTGATGCAGGTTATGCTGATGCT
GGATCTGCTGTTGATCCCCGCGTTCATCCCAACTGACTGTGGGTTCTTGG
TAAGCGGACGGGAAGTTCTGTGCGTGCTCCTGTGTCGGCTCTCTTTCCCA
TGCCGCCTGAAGGACATGCGCTTGGTTTTCGGGNNNNNNNNNNNNNNNNN
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CAAGGCGCAACGGATGCCACGATACTTTTTTGAAGAGCCTGCTGAAGAAA
AAAGAAAACACATGCAACGCATGCCCTAGCAACTGAAGCAGCAGCAAGGG
CGAAAACCCATTCCCTATTTTCCCTACCGCGAACAAGCAAGCCCCCCCGA
AAAAAACGCACAAGGCGCAACGGATGCCACGATACGTTTTTGAAGAGCCT
GCTGTTGAAAAAAAAAAAAATGCAACGCATGCCCTAGCAGCTGCAGCAAC
AGCAACCCCAACCTGGCTAGTTATTCTTGCCCTTCGCCTTTGCCAGGTCT
ACCTGGAGTTGCATCATCCTGATTTGGTGATCACGATCTGCCTTTTGCTC
TCCCCGTGCAGCCGCCCTCTCCACTTCACGCTCTTGCCTGTCGTGTTTCC
TTTCATCTTCTCGCATTGCCCTCTCGTGGGCCATCATGTCCAGGAGCTCT
TTCCTCCTCCCTAGTTCTCGTTTATCTTCCGCCGCCCGCCTCCTCTCGTC
CTCTTGACGTTTCTGATCGGCGAGTGTCCGAGCGTCAGCCACCTGTCGCT
CCATGAAGCTGGACACGTGGCACGACGGCGCAAGAGAGGAACCAGAGTAG
GGTAAGCTCTGGCACCTCCCTGATGGAGTAGCCAAGAATAATACTGCGAT
GACACTTCTGGTACAGTTTACGTCCACCAAAATAATCTAACGATAATGCA
CAGCGTCTACCACACGAAGGAGTTGACAGAACCAAGACATGGACAGAGTC
GACGAACAGCCTTATCTATATAGCCCATCCTCGGCGAGCTTATTGGTCTT
GGCACGGGGGTTCCTTCCTCCCGAAGCCCCACTCGACGCCCCTGAAGGGT
CCATGCCTGATATGGCGCGCGCCCCCCCAGTGCTGCAGGACCGGGGATGG
ATGTCTGACCGGCGGCGGACAGCCCAGAGTTCGTCACGCCGGCGCCGAGC
ACCAACAACCTCGCTACCTGCTTCATGACCTGAAGCACCTTGTCCGGCGT
AACACGTTCTATGGGCCATCCGCCGTGAAACCAGTTCGAATCCGGCAGGC
TGCGGAAGTCCATCATTTCCACGCCGTAGAGCTCGAGCAGATCAATTATG
ACCGACTCGTCAAACCTTTCAAACCCGGGCAGCTGCATATCCTCGTCACC
ACCAACATCATCCATCAAGTCCTGGACGCTGTCTCCGTTGCGCTGAAGAC
TAAGCCTTTTGTCGAGTAGTACCGTCATCATGGCCACGGCCCTTTCCGGC
TGAACTTCGTCAGGCGTGAAGCCCGTGTTGAGGAAGTAGTCCGCCTCCTC
CGTGGTGACCCCGGCACTTTGCGCAAGCGTCGAAATGCTCAGCGACCCCA
GGTGCTTCACCAATTCGCCAAGCGGCGGAGCCTTCCTCGATGGCCCGCTC
CCCGCGGGCGATAAGTCATCGTCTATCCCGCCCATACTCATGGTCGGGCT
TGATCCACCGCTGGCAGCGCCACCCGCCGAAGCCTCCGACGCGGGCCTCG
CCCCCCCGATGCTGCTGGCCGAACTCACCCGACCGCTGGCACGGCCACCA
GCCGCTGCACCGGAGCGGGAACCCAACGCGATGTTGTCGGCGGCAACAGC
TTCTTCGAATGATGTAGCCTTCGCGCCCGGCCCGCATCAGGCGTTGCCCT
GGTTGATGGCCCACGTCCCCATCGCGGAGTGCGAGGCCGCCTTGTCGGCT
TTCTTTAGCTTGGTCTCCTCCGAGTCCTACCTCGCGGCAGCCTTCGCGTC
CACTATCGCGGTCAGAACTTTGTCCTGTGCGGCACATCGGGGACAAGAAG
CAACAGCGGCGCGGCAGCTCGTGAGCTCTACGACTTACAAATTGCATCAC
TAGCGTCGGCGATAGCTATACGCATCGTCTGTTGTGTACTTCCGTGTCAA
CACTGCTACGTCACGCCCCCAAACAATACAGAGTGGGAGTGAAAACTTCG
ACGGTATTTTGATTTTATGGGCGAAGGACCGTCTCAGCAAGCTAACTCTC
TGCACGTTTTGCGTCGCCTGGCGTGTAGCACGCTCTATCTACTTCTGTCT
TCCTGTTTTCATACTGCGCATGTAAGTTGGACTTACAGCCAACCCTGTGC
GTACCCCTCTTATCTGCAAGTGTAACGTTGGCGACGACGGCAGGCATTTT
CTTCGGTCGGGACAGCGCAGGTGTTTCACGATACTCTGTGGATTATCCAT
GTGCAGACATTCGTGCCCATGTTTAGACTGCCATGATCGCGTAAGCTTAC
GCCCGTCACAAAAGGTAGAGATAGCTTATAGGCTCTAGCCCCCTTAGCAG
CTGGATCTTGGTATTCTTCTCTCCCGCGTCCTCCGAACCACTCTCAGCAG
TGCCGGCTCCGGAGTCCCGCTGGGCCTTACCATCGCGCTTGCTCTGGTC

Coding sequence (CDS) from alignment at Scaffold_370:298348..302996+

>EsuBft1167_2a-0001 ID=EsuBft1167_2a-0001|Name=EsuBft1167_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=267bp|location=Sequence derived from alignment at Scaffold_370:298348..302996+ (Ectocarpus subulatus male Bft15b)
ATGGCCCGTCTGGAACTCGACGACACGCCCACGAGTATCGCACGTAGGGA
CGCGACAGCATTCGTCAGCCCACAGGACTGCGTCGTCTTTCTACTTTTCA
CGCAATCGCAAGTTATGCTGATGCTGGATCTGCTGTTGATCCCCGCGTTC
ATCCCAACTGACTGTGGGTTCTTGGTAAGCGGACGGGAAGTTCTGTGCGT
GCTCCTGTGTCGGCTCTCTTTCCCATGCCGCCTGAAGGACATGCGCTTGG
TTTTCGGGNNNNNNNNN