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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 67593.Physo140614 |
| ProteomeId | EsuBft1167_11 |
| Protein domains | IPR001584 |
| Protein domains | IPR012337 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 4776|Peronosporales |
| Length | 2619 |
| Hectar predicted targeting category | other localisation |
| Evalue | 7.23e-16 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | gag-polypeptide of LTR copia-type |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003676 |
| GO | 0003824 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1167_11a-0001 ID=EsuBft1167_11a-0001|Name=EsuBft1167_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2619bp|location=Sequence derived from alignment at Scaffold_370:214988..218397- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGATCATGTTCGTGGACAGCTTCTCGCGGTGGATGAAGCTGTACGGGAT GAGGCGCAAGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCGCCGGCA TGAGTGGCACCGGTGTCCCTCGTTCTTTCCGGATGGACAACGGGGGGGAG TTCGTCAGCCGCGACTTCATCGCCTTCTGCGACAACGCCGGCATCCGCCG TACGTACACGGCGCCGGGCACCCCACAGCAGAATGGTCCGGCGGAGAGTG CGATCTGGCGCGTGAACAAGGCCGGCCACGCCGCTCGTCTCGAGGCACCC CGCCTGTTCCCCAAGATCGACTTCACCCGCGTCCCCGGCTTCGGGCGCGA TGGCGAGCGACTCTGGCTAGAATCGTGTCACTGGGCTGCCGGCGGCTTCA ACCGTTCTCCGACCAAGGCAAACGTCGGGTACAAGTCGCCGCACGAGCTC TTCACCGGTCGCCCGCCACCGCTCCAGATCGTCCCGTTCTTGCAGCCGGG GTATATGCGTGTGACGCGCGCGAGGAAGATGGATCCCCAGGCAGTGCTGT GCTGCTACCTCAACAACGGCGACAACCATCACGAGTCGGCGGTCAAGGTC CTCAAGTTCGCGACGGGGCGCGTGTGCATTACGAACAACGTCGTGTGGGT CTCCGAGCCCGCGCCGTTGCTGACCCCGCCGCTGGAGATGCCGGTGCCGG CGGGCGAGGGTGGAGATTCGGATGTCGCCGCCGCACCGTTTCTAATTGAG TACATTCCGCCGCCTCTGTTACCCCCCTCACCGTTCGCCCGATATCCCAC TTCACCCGCTGCCACATCCTCACAGGCGCCGCCGGCAACTTACACACCAT CATCGCCGGCGGCGCCGTCTACCGCAGCCACACTATCGCCACCGGTCACC GCGCCGCCTGCAACGCCACCGTTCACCACCACCGCGCCACGTGCAACGCC CCTCGCCGCCGCGCCACCGTTCACCACCACCGCGCCGCCTGCAACGCCGT TCGCCGTCGTGCCACCGTCTCCCGCCGTCGCGCCTCCCGGTGCCGCGCCA TCGACCAACATGCCGCCGCTCACGACGAGGACCATCCGTGAACTGGACGT GGGGCGCGGGGACATGAGGGTTTCTGGGCGCACGAGGGCAGCCGCTAAGA ACCAAGGGGGGGGGCGGGCGTCGTCAATGCCGCCCCTCTCTGCCAGGGCC AATCGAGAGCTGGACTTGGGACGAGAGACGCGTGTGCCAGGGAGATTGAG GGGTCGGGGGGTGCGTTTCCAGGATGGGGAGGGCGAGAGGTCGACGTCAC CTGGCGGGAGCGGCGACGCTCCCGCCCACCGCTTCGGGCTTGTATCCCTG CAGGACAAGGCAACGCTCCTGTCGACTCTCACCACTCGCAGCGTCGTCGA TAGGGAGAGAAAGGAGATCCTGAGATCAGCCGGAGGACGTGAAGGAGCGG AGCCGAAGGACTGCGTGAACAAGGAGGCTGTGTCTTCTGAGTATGCTGAC TTGTGGATAGACTCTGTAGAGTGGGAGTTCAGAGGTCTGATGGAGGCTGG TACCTTTGAGGAAGCATCAAGGCAACGGCATTCACACTTGGCGAAATGTT TGATTTTTTGGGGTTTTATTCAGTGCCTGGCGGATACGTGTGTGTTTCGG TTGATCGAGGAGGGAGGAGTGGTAGTGACTCTGGTAGTACATGTGGATGA CATATTTTCGATTGGAGAGGAGGAGAGGTGTGACCAATTTGGTAGGGACC TCAACACCATGGTACCGGTGAAGAATCTTGGTGACTTGAGATGGTACTCT GGATGTTTTCATGAGAGGGATTGGGATGCAGGGACTTTGAAGCTCTCGCA GCAGACACACGCTGAAGAGTTGGGGATGGAGTTTGGGGTAAAGTACGGGA AGGAAATTCCTTTTCCGATAGGGCTGAAGCTTTCAGAGTTTGACCAGGAT AAGGAAGTGGTCTTGGTATTTTGGGGGTTGAGCATGGAGGTGTTCGCAGA CGAAGATTCTGCAAGCAAGGCTGCCGATAGGAGGTCTGTGTCAGGAGGCT TGGTGATGTGTGGGGGGGGATGTATTCCTTGGTTTTCAAGGACGCAGAAG TGCGTTACGTTGAGCACGACAGAGGCGGAGTATGTCTCCCTTGCGGATGT GATGAAGGACGTGTTGTTTCTGAGGCAGGTATGGCGTTGCATGTTGCCAG AAGCAGGCAGGAAGGAGATTTCGATTTTTCACGTGGAATCAGCGTATCAA CATGCTGACTTCCTCACGAAGGCACTTCACGTCGGAGATTTTGAGTTTCA TCGTAATTTCGTGATGAGTCTGGGACAGGAACGGTAGATTTGGATATACT TGTATTTGATCAAAGAACTAGGGTGGCATTGTTTTACATTTTTGCGTATG GTCTTCTCAATGAATGGTGCCCTAGGATGGGGGGCAATTGGATCGCTATG ATTATCGAAGAACAACAACTGGAATAATCGGGGATGGAAATATATTTCTA GCCCAGAAGGCAATTGTTGCAGATTTGAGTTGTGCTTTGGATTCTATTTT CTTGTGTTTTTGGAGTTATTGAAACATCATGAAGACATGGCATAGTCACA AGCAGGGGGGCTGATAGAT back to topprotein sequence of EsuBft1167_11a-0001 >EsuBft1167_11 ID=EsuBft1167_11|Name=EsuBft1167_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=778bp
MIMFVDSFSRWMKLYGMRRKSDTLAFVKKFLAGMSGTGVPRSFRMDNGGE FVSRDFIAFCDNAGIRRTYTAPGTPQQNGPAESAIWRVNKAGHAARLEAP RLFPKIDFTRVPGFGRDGERLWLESCHWAAGGFNRSPTKANVGYKSPHEL FTGRPPPLQIVPFLQPGYMRVTRARKMDPQAVLCCYLNNGDNHHESAVKV LKFATGRVCITNNVVWVSEPAPLLTPPLEMPVPAGEGGDSDVAAAPFLIE YIPPPLLPPSPFARYPTSPAATSSQAPPATYTPSSPAAPSTAATLSPPVT APPATPPFTTTAPRATPLAAAPPFTTTAPPATPFAVVPPSPAVAPPGAAP STNMPPLTTRTIRELDVGRGDMRVSGRTRAAAKNQGGGRASSMPPLSARA NRELDLGRETRVPGRLRGRGVRFQDGEGERSTSPGGSGDAPAHRFGLVSL QDKATLLSTLTTRSVVDRERKEILRSAGGREGAEPKDCVNKEAVSSEYAD LWIDSVEWEFRGLMEAGTFEEASRQRHSHLAKCLIFWGFIQCLADTCVFR LIEEGGVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYS GCFHERDWDAGTLKLSQQTHAEELGMEFGVKYGKEIPFPIGLKLSEFDQD KEVVLVFWGLSMEVFADEDSASKAADRRSVSGGLVMCGGGCIPWFSRTQK CVTLSTTEAEYVSLADVMKDVLFLRQVWRCMLPEAGRKEISIFHVESAYQ HADFLTKALHVGDFEFHRNFVMSLGQER back to topmRNA from alignment at Scaffold_370:214988..218397- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1167_11a-0001 ID=EsuBft1167_11a-0001|Name=EsuBft1167_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3410bp|location=Sequence derived from alignment at Scaffold_370:214988..218397- (Ectocarpus subulatus male Bft15b) ATGATCATGTTCGTGGACAGCTTCTCGCGGTGGATGAAGCTGTACGGGAT
GAGGCGCAAGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCGCCGGCA
TGAGTGGCACCGGTGTCCCTCGTTCTTTCCGGATGGACAACGGGGGGGAG
TTCGTCAGCCGCGACTTCATCGCCTTCTGCGACAACGCCGGCATCCGCCG
TACGTACACGGCGCCGGGCACCCCACAGCAGAATGGTCCGGCGGAGAGTG
CGATCTGGCGCGTGAACAAGGCCGGCCACGCCGCTCGTCTCGAGGCACCC
CGCCTGTTCCCCAAGATCGACTTCACCCGCGTCCCCGGCTTCGGGCGCGA
TGGCGAGCGACTCTGGCTAGAATCGTGTCACTGGGCTGCCGGCGGCTTCA
ACCGTTCTCCGACCAAGGCAAACGTCGGGTACAAGTCGCCGCACGAGCTC
TTCACCGGTCGCCCGCCACCGCTCCAGATCGTCCCGTTCTTGCAGCCGGG
GTATATGCGTGTGACGCGCGCGAGGAAGATGGATCCCCAGGCAGTGCTGT
GCTGCTACCTCAACAACGGCGACAACCATCACGAGTCGGCGGTCAAGGTC
CTCAAGTTCGCGACGGGGCGCGTGTGCATTACGAACAACGTCGTGTGGGT
CTCCGAGCCCGCGCCGTTGCTGACCCCGCCGCTGGAGATGCCGGTGCCGG
CGGGCGAGGGTGGAGATTCGGATGTCGCCGCCGCACCGTTTCTAATTGAG
TACATTCCGCCGCCTCTGTTACCCCCCTCACCGTTCGCCCGATATCCCAC
TTCACCCGCTGCCACATCCTCACAGGCGCCGCCGGCAACTTACACACCAT
CATCGCCGGCGGCGCCGTCTACCGCAGCCACACTATCGCCACCGGTCACC
GCGCCGCCTGCAACGCCACCGTTCACCACCACCGCGCCACGTGCAACGCC
CCTCGCCGCCGCGCCACCGTTCACCACCACCGCGCCGCCTGCAACGCCGT
TCGCCGTCGTGCCACCGTCTCCCGCCGTCGCGCCTCCCGGTGCCGCGCCA
TCGACCAACATGCCGCCGCTCACGACGAGGACCATCCGTGAACTGGACGT
GGGGCGCGGGGACATGAGGGTTTCTGGGCGCACGAGGGCAGCCGCTAAGA
ACCAAGGGGGGGGGCGGGCGTCGTCAATGCCGCCCCTCTCTGCCAGGGCC
AATCGAGAGCTGGACTTGGGACGAGAGACGCGTGTGCCAGGGAGATTGAG
GGGTCGGGGGGTGCGTTTCCAGGATGGGGAGGGCGAGAGGTCGACGTCAC
CTGGCGGGAGCGGCGACGCTCCCGCCCACCGCTTCGGGCTTGTATCCCTG
CAGGACAAGGCAACGCTCCTGTCGACTCTCACCACTCGCAGCGTCGTCGA
TAGGGAGAGAAAGGAGATCCTGAGATCAGCCGGAGGACGTGAAGGAGCGG
AGCCGAAGGACTGCGTGAACAAGTCCATTTGCGTGCGCCACCTTGCTTAC
CTCCCGCAAGGACGTTGATCGCACGATGAGGGATTTAAATCCCCCGGAAG
TGGCACCAGACTTGCCACATTGCTATGCCAACGACTTGCGCGTGCCCAAA
ACTTATAGGGAGGCTGTGTCTTCTGAGTATGCTGACTTGTGGATAGACTC
TGTAGAGTGGGAGTTCAGAGGTCTGATGGAGGCTGGTACCTTTGAGGAAG
TAATGTAGCAACCAGAGAGTGTTATTAAGGCCAAGTGGGTGTTTCACTGG
AAGTCTGATGAGTATGGATGGCCGACTAGTGTGAAATCACGACTAGTAGC
GAGAGGAGATATGCAGCGAGTACATGTAGATTGTGGAGAGACGTATGCAC
CGACTGCAGCGGTTTCTAGCGTTCGCTTGTTGGCAGCGATGGCATGTGAG
CAAAATCTTTCTCTTCGTCATTTTGACATCAAGCAAGCATTTGTCCAGTA
GGATTTGGATGGGGATGTTTTCATGCGTCTGCCAGAGGGTGTGGTAGATT
GTCACGTATGATAGTGAAGTTGAACAAGAGTCTGTATGGCCTTAAGCAGG
CATCAAGGCAACGGCATTCACACTTGGCGAAATGTTTGATTTTTTGGGGT
TTTATTCAGTGCCTGGCGGATACGTGTGTGTTTCGGTTGATCGAGGAGGG
AGGAGTGGTAGTGACTCTGGTAGTACATGTGGATGACATATTTTCGATTG
GAGAGGAGGAGAGGTGTGACCAATTTGGTAGGGACCTCAACACCATGGTA
CCGGTGAAGAATCTTGGTGACTTGAGATGGTACTCTGGATGTTTTCATGA
GAGGGATTGGGATGCAGGGACTTTGAAGCTCTCGCAGCAGACACACGCTG
AAGAGTTGGGGATGGAGTTTGGGGTAAAGTACGGGAAGGAAATTCCTTTT
CCGATAGGGCTGAAGCTTTCAGAGTTTGACCAGGATAAGGAAGTGGTATC
ATGGCCTTTTCGTGAGCTAAAAGGATCACTGATGTGGCTGACAACGCAAA
CGAGGCCAGATATCGCAATTGCAGTACGAGCGGTAGCACGGTACTGTGCT
TCTCCCAAAGAAATTCATTGGAGAACAGGTCTTGGTATTTTGGGGTATGT
GGTAAGCACGAGTAGATTACATTCAGGAGGGGTAGTGTAGCAGGGTTGAG
CATGGAGGTGTTCGCAGACGAAGATTCTGCAAGCAAGGCTGCCGATAGGA
GGTCTGTGTCAGGAGGCTTGGTGATGTGTGGGGGGGGATGTATTCCTTGG
TTTTCAAGGACGCAGAAGTGCGTTACGTTGAGCACGACAGAGGCGGAGTA
TGTCTCCCTTGCGGATGTGATGAAGGACGTGTTGTTTCTGAGGCAGGTAT
GGCGTTGCATGTTGCCAGAAGCAGGTATGCCGTGTATTCCGGTGTTCGAG
GATAACGAGGGGGCTATTCAATTGGCGCAGAACCCGATTAGCTAGAGTAA
CTCGAAGCACATCGACGTAAGGCACCACTGTATCAGGGAACTGGTAGGCA
GGAAGGAGATTTCGATTTTTCACGTGGAATCAGCGTATCAACATGCTGAC
TTCCTCACGAAGGCACTTCACGTCGGAGATTTTGAGTTTCATCGTAATTT
CGTGATGAGTCTGGGACAGGAACGGTAGATTTGGATATACTTGTATTTGA
TCAAAGAACTAGGGTGGCATTGTTTTACATTTTTGCGTATGGTCTTCTCA
ATGAATGGTGCCCTAGGATGGGGGGCAATTGGATCGCTATGATTATCGAA
GAACAACAACTGGAATAATCGGGGATGGAAATATATTTCTAGCCCAGAAG
GCAATTGTTGCAGATTTGAGTTGTGCTTTGGATTCTATTTTCTTGTGTTT
TTGGAGTTATTGAAACATCATGAAGACATGGCATAGTCACAAGCAGGGGG
GCTGATAGAT back to topCoding sequence (CDS) from alignment at Scaffold_370:214988..218397- >EsuBft1167_11a-0001 ID=EsuBft1167_11a-0001|Name=EsuBft1167_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2337bp|location=Sequence derived from alignment at Scaffold_370:214988..218397- (Ectocarpus subulatus male Bft15b) ATGATCATGTTCGTGGACAGCTTCTCGCGGTGGATGAAGCTGTACGGGAT GAGGCGCAAGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCGCCGGCA TGAGTGGCACCGGTGTCCCTCGTTCTTTCCGGATGGACAACGGGGGGGAG TTCGTCAGCCGCGACTTCATCGCCTTCTGCGACAACGCCGGCATCCGCCG TACGTACACGGCGCCGGGCACCCCACAGCAGAATGGTCCGGCGGAGAGTG CGATCTGGCGCGTGAACAAGGCCGGCCACGCCGCTCGTCTCGAGGCACCC CGCCTGTTCCCCAAGATCGACTTCACCCGCGTCCCCGGCTTCGGGCGCGA TGGCGAGCGACTCTGGCTAGAATCGTGTCACTGGGCTGCCGGCGGCTTCA ACCGTTCTCCGACCAAGGCAAACGTCGGGTACAAGTCGCCGCACGAGCTC TTCACCGGTCGCCCGCCACCGCTCCAGATCGTCCCGTTCTTGCAGCCGGG GTATATGCGTGTGACGCGCGCGAGGAAGATGGATCCCCAGGCAGTGCTGT GCTGCTACCTCAACAACGGCGACAACCATCACGAGTCGGCGGTCAAGGTC CTCAAGTTCGCGACGGGGCGCGTGTGCATTACGAACAACGTCGTGTGGGT CTCCGAGCCCGCGCCGTTGCTGACCCCGCCGCTGGAGATGCCGGTGCCGG CGGGCGAGGGTGGAGATTCGGATGTCGCCGCCGCACCGTTTCTAATTGAG TACATTCCGCCGCCTCTGTTACCCCCCTCACCGTTCGCCCGATATCCCAC TTCACCCGCTGCCACATCCTCACAGGCGCCGCCGGCAACTTACACACCAT CATCGCCGGCGGCGCCGTCTACCGCAGCCACACTATCGCCACCGGTCACC GCGCCGCCTGCAACGCCACCGTTCACCACCACCGCGCCACGTGCAACGCC CCTCGCCGCCGCGCCACCGTTCACCACCACCGCGCCGCCTGCAACGCCGT TCGCCGTCGTGCCACCGTCTCCCGCCGTCGCGCCTCCCGGTGCCGCGCCA TCGACCAACATGCCGCCGCTCACGACGAGGACCATCCGTGAACTGGACGT GGGGCGCGGGGACATGAGGGTTTCTGGGCGCACGAGGGCAGCCGCTAAGA ACCAAGGGGGGGGGCGGGCGTCGTCAATGCCGCCCCTCTCTGCCAGGGCC AATCGAGAGCTGGACTTGGGACGAGAGACGCGTGTGCCAGGGAGATTGAG GGGTCGGGGGGTGCGTTTCCAGGATGGGGAGGGCGAGAGGTCGACGTCAC CTGGCGGGAGCGGCGACGCTCCCGCCCACCGCTTCGGGCTTGTATCCCTG CAGGACAAGGCAACGCTCCTGTCGACTCTCACCACTCGCAGCGTCGTCGA TAGGGAGAGAAAGGAGATCCTGAGATCAGCCGGAGGACGTGAAGGAGCGG AGCCGAAGGACTGCGTGAACAAGGAGGCTGTGTCTTCTGAGTATGCTGAC TTGTGGATAGACTCTGTAGAGTGGGAGTTCAGAGGTCTGATGGAGGCTGG TACCTTTGAGGAAGCATCAAGGCAACGGCATTCACACTTGGCGAAATGTT TGATTTTTTGGGGTTTTATTCAGTGCCTGGCGGATACGTGTGTGTTTCGG TTGATCGAGGAGGGAGGAGTGGTAGTGACTCTGGTAGTACATGTGGATGA CATATTTTCGATTGGAGAGGAGGAGAGGTGTGACCAATTTGGTAGGGACC TCAACACCATGGTACCGGTGAAGAATCTTGGTGACTTGAGATGGTACTCT GGATGTTTTCATGAGAGGGATTGGGATGCAGGGACTTTGAAGCTCTCGCA GCAGACACACGCTGAAGAGTTGGGGATGGAGTTTGGGGTAAAGTACGGGA AGGAAATTCCTTTTCCGATAGGGCTGAAGCTTTCAGAGTTTGACCAGGAT AAGGAAGTGGTCTTGGTATTTTGGGGGTTGAGCATGGAGGTGTTCGCAGA CGAAGATTCTGCAAGCAAGGCTGCCGATAGGAGGTCTGTGTCAGGAGGCT TGGTGATGTGTGGGGGGGGATGTATTCCTTGGTTTTCAAGGACGCAGAAG TGCGTTACGTTGAGCACGACAGAGGCGGAGTATGTCTCCCTTGCGGATGT GATGAAGGACGTGTTGTTTCTGAGGCAGGTATGGCGTTGCATGTTGCCAG AAGCAGGCAGGAAGGAGATTTCGATTTTTCACGTGGAATCAGCGTATCAA CATGCTGACTTCCTCACGAAGGCACTTCACGTCGGAGATTTTGAGTTTCA TCGTAATTTCGTGATGAGTCTGGGACAGGAACGGTAG back to top
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