EsuBft1155_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1155_9a-0001
Unique NameEsuBft1155_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:691051..693769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1155_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length155
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1155_9aEsuBft1155_9aEctocarpus subulatus male Bft15bgeneScaffold_340 691051..693769 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1155_9a-0001-exonagat-exon-84389Ectocarpus subulatus male Bft15bexonScaffold_340 691051..691348 -
EsuBft1155_9a-0001-exonagat-exon-84387Ectocarpus subulatus male Bft15bexonScaffold_340 691956..692766 -
EsuBft1155_9a-0001-exonEsuBft1155_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 693244..693588 -
EsuBft1155_9a-0001-exonagat-exon-84388Ectocarpus subulatus male Bft15bexonScaffold_340 693667..693769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1155_9a-0001-cdsEsuBft1155_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 691051..691348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1155_9a-0001EsuBft1155_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 691051..693769 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1155_9a-0001 ID=EsuBft1155_9a-0001|Name=EsuBft1155_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1557bp|location=Sequence derived from alignment at Scaffold_340:691051..693769- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGTGGAGTGAAGCGGGCTACCCGAAACTCGGGTATTGCGGTAGA
CGTCAACCTGTGGGATCTGCGAGACCTCCCCAAGACTAGCACCGTCAAGA
GTGCGGCAACGATGAACAACAGCCCGGACCCACCCTCCCCTCGCTCCACG
ACCCACGCAGCGCCCAAGCTGAAATTGAAGGACTACACCGTGAGGCTGCC
ACGCGCATCAAGGGACCAGGACATGAAGCTTCTCCGCCGGGCGGCAAGGG
ACAACGAGGGAGTCGGGGGATCGGACCCCGTCTACCCGTTGACCGGACCT
GCGTGCATCACGAGGAAGGAAGCTGCCGCTGCGCTGCTAGCGCTGGGCGA
AGAGCGCGACGACGAGATGGTGGCGGCGGCGAGGGCGGCAGCATCGGAGA
GCGGCGACTGCGGTGCAGGCGCCGGGAGCACCATCGCAGACGGTGAAAGT
TCGATCCCCCTTGCCATGGGCATCAGCCAGCCACTTCTGGCGGAGGCCGA
AGCCGACGCCCGCTTGGCCAGCCCTGGCGTAAGCCGTAACCTCACGACGG
AAGACCAACGGAGTTCGCTGCCACACCCCGCGCAGCTCGACCTCGCCCAG
GGCAAGCCGGACTCGAGCGACGATACCACCGGTGCCATGTCGGCTGCTGC
GAAGATTGCCCCTGCTAGAGCCGGAGACGTGGCTGGGTTGGCGGCGGCGG
CGGTGGCTAAGGTGCTCTCTCGTGGAGCGGCGGAGGGAAAACCGGTCTTG
AAGAGAATCTTTGCGACGGTCGTGGCCTACGATATCGGCAACAGCATGGA
AGTAGCCGGCGGCGGGGGCAAGGGGTGCGGCGGCAGCAGCAGCAGCAGCT
GCGGCGGCTGCGGCGGCAGCGGCGGTGCGTTCGACGGCGTAGCAGGCGGA
GGGATAGGAGGAGGACAAGGGCGGCGATTCCAGCCCGAACACGGCGTCGG
GGGATCGACTTCGTCAAACAAGTACAAGCATGTGATCGGCGATGGCGACG
TCGGCGGGGACTCTTCGATGGTTGACCGGCTGGGCAAGATCGCCTGTGTC
TGGGGCAGCAGCACCGGACACCACGGGCAGGGAGGAGATGGCGGTGGGAA
GGCGGGACCGGGGTGCTACGGGAACGGAGGAGGGGCTAGCGGCGACCGCG
CCGAAAGCGACGGAGCACACACAAGTGGCAGTCGCGGCTATAGCGGCGGC
TACAGCGGGGTCACTACATCCGATGACAACGACAGCAGCAGCGGCGGTGA
TGGAAACGGCACCGGCGGCGGCATCGCCTGGGACAACGCCACGGACAACA
CCGGTGAATGCAACGTGTCACCGAGCGAGCTTTCACCGCTCTCTCCGTTT
CACGACAGCAGCAGCTTCGGGAAGCGGAACAGGGGCCACGACGACGACGA
CAACGACGACATGGTCGATGGGAGTGGCTGTGTGGACGTCAACACAGCGT
CCGGCGATGACGGCGTCAGCGAGCGTTGCGCTAAGCGCGCCCGGCAGGCG
GCTGGTGGCGGAAAGTCCCTGCAACTCCGAGGGTTGCGTGACCGCAGCGG
AAAGTAA
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protein sequence of EsuBft1155_9a-0001

>EsuBft1155_9 ID=EsuBft1155_9|Name=EsuBft1155_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=518bp
MASGVKRATRNSGIAVDVNLWDLRDLPKTSTVKSAATMNNSPDPPSPRST
THAAPKLKLKDYTVRLPRASRDQDMKLLRRAARDNEGVGGSDPVYPLTGP
ACITRKEAAAALLALGEERDDEMVAAARAAASESGDCGAGAGSTIADGES
SIPLAMGISQPLLAEAEADARLASPGVSRNLTTEDQRSSLPHPAQLDLAQ
GKPDSSDDTTGAMSAAAKIAPARAGDVAGLAAAAVAKVLSRGAAEGKPVL
KRIFATVVAYDIGNSMEVAGGGGKGCGGSSSSSCGGCGGSGGAFDGVAGG
GIGGGQGRRFQPEHGVGGSTSSNKYKHVIGDGDVGGDSSMVDRLGKIACV
WGSSTGHHGQGGDGGGKAGPGCYGNGGGASGDRAESDGAHTSGSRGYSGG
YSGVTTSDDNDSSSGGDGNGTGGGIAWDNATDNTGECNVSPSELSPLSPF
HDSSSFGKRNRGHDDDDNDDMVDGSGCVDVNTASGDDGVSERCAKRARQA
AGGGKSLQLRGLRDRSGK
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mRNA from alignment at Scaffold_340:691051..693769-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1155_9a-0001 ID=EsuBft1155_9a-0001|Name=EsuBft1155_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2719bp|location=Sequence derived from alignment at Scaffold_340:691051..693769- (Ectocarpus subulatus male Bft15b)
ATGGCCAGTGGAGTGAAGCGGGCTACCCGAAACTCGGGTATTGCGGTAGA
CGTCAACCTGTGGGATCTGCGAGACCTCCCCAAGACTAGCACCGTCAAGA
GTGGTGAGTGAGGTGGAGGCCTAAAACAGATTGATGCAGTCGAGGTGCGT
GAAAATACATGGTTGCCTGGCGGCCCGGCAGCGGCAACGATGAACAACAG
CCCGGACCCACCCTCCCCTCGCTCCACGACCCACGCAGCGCCCAAGCTGA
AATTGAAGGACTACACCGTGAGGCTGCCACGCGCATCAAGGGACCAGGAC
ATGAAGCTTCTCCGCCGGGCGGCAAGGGACAACGAGGGAGTCGGGGGATC
GGACCCCGTCTACCCGTTGACCGGACCTGCGTGCATCACGAGGAAGGAAG
CTGCCGCTGCGCTGCTAGCGCTGGGCGAAGAGCGCGACGACGAGATGGTG
GCGGCGGCGAGGGCGGCAGCATCGGAGAGCGGCGACTGCGGTGCAGGCGC
CGGGAGCACCATCGCAGACGGTGAAAGTACGAGCTACGGAATCAGCTGTG
GTGCATTTAGGGGGTGACGGACGAGGGTACGGTGCGGTGGTACCAAATTG
AGTGCACCCTTGGCTCTACTTGACTGTTGTAGAGGCATGAGAGGCGCTTC
TGGTATTGGTACGGTGTGGTTTCGAGCGGACATACGTGGTGTCTCTCGTG
CGGTTAGGGTATGGGCTTACCTCGAATCGCTCCCGAAGAGTCGCTCCCCC
TTGCCTCTGGCTGGTTCAAGCACAGGACTCGCAACCTGTGACTGCACCTT
CACTACCCCCTGCAGCTACATCTGATCGCCTTACTGCTCCATTTTTTCCC
ATGCACACGCTGTGTTGAGGTAGGTTACGTGGTCGACGACACCACCTCCC
GCACCCGACTACTGTAGATAGCAAGAGCTTCTACTCGAGATAATCACGTC
GTGACAAGCGCATCCCCATTCTCACCACCCCGACGTACCCCCTTTTTCTC
CAGGTTCGATCCCCCTTGCCATGGGCATCAGCCAGCCACTTCTGGCGGAG
GCCGAAGCCGACGCCCGCTTGGCCAGCCCTGGCGTAAGCCGTAACCTCAC
GACGGAAGACCAACGGAGTTCGCTGCCACACCCCGCGCAGCTCGACCTCG
CCCAGGGCAAGCCGGACTCGAGCGACGATACCACCGGTGCCATGTCGGCT
GCTGCGAAGATTGCCCCTGCTAGAGCCGGAGACGTGGCTGGGTTGGCGGC
GGCGGCGGTGGCTAAGGTGCTCTCTCGTGGAGCGGCGGAGGGAAAACCGG
TCTTGAAGAGAATCTTTGCGACGGTCGTGGCCTACGATATCGGCAACAGC
ATGGAAGTAGCCGGCGGCGGGGGCAAGGGGTGCGGCGGCAGCAGCAGCAG
CAGCTGCGGCGGCTGCGGCGGCAGCGGCGGTGCGTTCGACGGCGTAGCAG
GCGGAGGGATAGGAGGAGGACAAGGGCGGCGATTCCAGCCCGAACACGGC
GTCGGGGGATCGACTTCGTCAAACAAGTACAAGCATGTGATCGGCGATGG
CGACGTCGGCGGGGACTCTTCGATGGTTGACCGGCTGGGCAAGATCGCCT
GTGTCTGGGGCAGCAGCACCGGACACCACGGGCAGGGAGGAGATGGCGGT
GGGAAGGCGGGACCGGGGTGCTACGGGAACGGAGGAGGGGCTAGCGGCGA
CCGCGCCGAAAGCGACGGAGCACACACAAGTGGCAGTCGCGGCTATAGCG
GCGGCTACAGCGGGGTCACTACATCCGATGACAACGACAGCAGCAGCGGC
GGTGATGGAAACGGGTTCATCATGACCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGAAGCGGCGGCCACGTAGGATACAGCGGCGCTT
TTCACCACAAGCGGCGCCCAGACGAAGGCAAGGGTTGTGACGAGTTATCG
AGCGCATCGTCGCCATCATCACCGTCTCGCGATAGCTGCCTCGGGAAGCA
GAGGAGGGAGAACAGCAACGACGACGGGGGTGGTGGGGCTGACGTCATCA
GCAAAAGGGTGAAGTCTGGGGGCCGTTACTGCTCCTACAGCGGCGGCAGC
GGCAGCAGCGGAGCCACCATCTCGGACGGCAACGACAGCAGCAGCAGCAG
CAGCAGCAGCAGCACCGGCGGCGGAGGGGGGATCATTTCCGTGAGCAGTA
CCAGCAGTAGCAGCAGCACCGGCGGCGGNAGGGGGCGGTGGGGCTGACGT
CATCAGCAAAAGGGTGAAGACTGGGGGCCGTTACTGCTCCTACAGCGGCG
GCAGCGGCAGCAGCGGAGCCACCATCTCGGACGGCAACGACAGCAGCAGC
AGCAGCAGCAGCAGCAGCACCGGCGGCGGAGGGGGGATCATTTCCGTGAG
CAGTACCAGCAGTAGCAGCAGCACCGGCGGCGGCATCGCCTGGGACAACG
CCACGGACAACACCGGTGAATGCAACGTGTCACCGAGCGAGCTTTCACCG
CTCTCTCCGTTTCACGACAGCAGCAGCTTCGGGAAGCGGAACAGGGGCCA
CGACGACGACGACAACGACGACATGGTCGATGGGAGTGGCTGTGTGGACG
TCAACACAGCGTCCGGCGATGACGGCGTCAGCGAGCGTTGCGCTAAGCGC
GCCCGGCAGGCGGCTGGTGGCGGAAAGTCCCTGCAACTCCGAGGGTTGCG
TGACCGCAGCGGAAAGTAA
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Coding sequence (CDS) from alignment at Scaffold_340:691051..693769-

>EsuBft1155_9a-0001 ID=EsuBft1155_9a-0001|Name=EsuBft1155_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1557bp|location=Sequence derived from alignment at Scaffold_340:691051..693769- (Ectocarpus subulatus male Bft15b)
ATGGCCAGTGGAGTGAAGCGGGCTACCCGAAACTCGGGTATTGCGGTAGA
CGTCAACCTGTGGGATCTGCGAGACCTCCCCAAGACTAGCACCGTCAAGA
GTGCGGCAACGATGAACAACAGCCCGGACCCACCCTCCCCTCGCTCCACG
ACCCACGCAGCGCCCAAGCTGAAATTGAAGGACTACACCGTGAGGCTGCC
ACGCGCATCAAGGGACCAGGACATGAAGCTTCTCCGCCGGGCGGCAAGGG
ACAACGAGGGAGTCGGGGGATCGGACCCCGTCTACCCGTTGACCGGACCT
GCGTGCATCACGAGGAAGGAAGCTGCCGCTGCGCTGCTAGCGCTGGGCGA
AGAGCGCGACGACGAGATGGTGGCGGCGGCGAGGGCGGCAGCATCGGAGA
GCGGCGACTGCGGTGCAGGCGCCGGGAGCACCATCGCAGACGGTGAAAGT
TCGATCCCCCTTGCCATGGGCATCAGCCAGCCACTTCTGGCGGAGGCCGA
AGCCGACGCCCGCTTGGCCAGCCCTGGCGTAAGCCGTAACCTCACGACGG
AAGACCAACGGAGTTCGCTGCCACACCCCGCGCAGCTCGACCTCGCCCAG
GGCAAGCCGGACTCGAGCGACGATACCACCGGTGCCATGTCGGCTGCTGC
GAAGATTGCCCCTGCTAGAGCCGGAGACGTGGCTGGGTTGGCGGCGGCGG
CGGTGGCTAAGGTGCTCTCTCGTGGAGCGGCGGAGGGAAAACCGGTCTTG
AAGAGAATCTTTGCGACGGTCGTGGCCTACGATATCGGCAACAGCATGGA
AGTAGCCGGCGGCGGGGGCAAGGGGTGCGGCGGCAGCAGCAGCAGCAGCT
GCGGCGGCTGCGGCGGCAGCGGCGGTGCGTTCGACGGCGTAGCAGGCGGA
GGGATAGGAGGAGGACAAGGGCGGCGATTCCAGCCCGAACACGGCGTCGG
GGGATCGACTTCGTCAAACAAGTACAAGCATGTGATCGGCGATGGCGACG
TCGGCGGGGACTCTTCGATGGTTGACCGGCTGGGCAAGATCGCCTGTGTC
TGGGGCAGCAGCACCGGACACCACGGGCAGGGAGGAGATGGCGGTGGGAA
GGCGGGACCGGGGTGCTACGGGAACGGAGGAGGGGCTAGCGGCGACCGCG
CCGAAAGCGACGGAGCACACACAAGTGGCAGTCGCGGCTATAGCGGCGGC
TACAGCGGGGTCACTACATCCGATGACAACGACAGCAGCAGCGGCGGTGA
TGGAAACGGCACCGGCGGCGGCATCGCCTGGGACAACGCCACGGACAACA
CCGGTGAATGCAACGTGTCACCGAGCGAGCTTTCACCGCTCTCTCCGTTT
CACGACAGCAGCAGCTTCGGGAAGCGGAACAGGGGCCACGACGACGACGA
CAACGACGACATGGTCGATGGGAGTGGCTGTGTGGACGTCAACACAGCGT
CCGGCGATGACGGCGTCAGCGAGCGTTGCGCTAAGCGCGCCCGGCAGGCG
GCTGGTGGCGGAAAGTCCCTGCAACTCCGAGGGTTGCGTGACCGCAGCGG
AAAGTAA
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