EsuBft1155_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1155_6a-0001
Unique NameEsuBft1155_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:723303..726343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LE47
ProteomeIdEsuBft1155_6
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length116
Hectar predicted targeting categoryother localisation
Evalue2.84e-91
EggNOG OGs2EAW9@1|root,2SH2Q@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004100.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1155_6aEsuBft1155_6aEctocarpus subulatus male Bft15bgeneScaffold_340 723303..726343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1155_6a-0001EsuBft1155_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 723807..726307 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1155_6a-0001-exonEsuBft1155_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 723303..723947 -
EsuBft1155_6a-0001-exonagat-exon-84360Ectocarpus subulatus male Bft15bexonScaffold_340 724797..724921 -
EsuBft1155_6a-0001-exonagat-exon-84361Ectocarpus subulatus male Bft15bexonScaffold_340 725947..726343 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1155_6a-0001-exonagat-three_prime_utr-1486Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 723303..723806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1155_6a-0001-cdsEsuBft1155_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 723807..723947 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1155_6a-0001-exonagat-five_prime_utr-957Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 726308..726343 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1155_6a-0001 ID=EsuBft1155_6a-0001|Name=EsuBft1155_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1167bp|location=Sequence derived from alignment at Scaffold_340:723303..726343- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGAGCCGCAGCTAGGAGTTTTTACTGTGTGCTTGATGCGCAAGTACGG
TTTGACGGTTCCCCACACGAAGACACGAAGACAAGCAGCCAAGTACCCAG
TATCAAGAGAGAGGAGCAGAGACGAGACTAGAGAGCCAGAGGTTGTTGTA
TCATCCGAAACAAGCTCGCACTCTCTACCTCTTCTGTCTGGGCTACGTGA
AGAAGCTTCTAGACAGGAGGAGGGGCTTCGGTTTGCCATGAACAGGCTGG
TGAGGTTCGGGGCGGAGGCATTGAAGCCGCAAAGGGTCGCCGGGGCACAC
AAGTGGCAGACGCCGCGGGTGTCGAGACGAAAGGCGAACGTGCTCCGCAA
GAAGGCCATCAGGGACGGGTCATTCGGCTCGATAGTCATCGATGAAGACA
CTGGGAAAGCGATTGGCGGGTGGGATCCGGCGTGGGATATCTTCGAAGCG
CCCGCTCCTCGACCGTTGAGGCCACCAAAGCTACACAAGAACCAGCGGGA
CAGAGCGCAGCGCGCCGATAAGATCACGGCCAAGCTTGGAGAGCAGGAGG
CCCGGCTCAAGGATCTCAACCGAGTAAAGGCGGTCCCGAAGCCCAAGCCA
GAAGACGGGGCACTTGCCCTTCTCAGATGGCTCAAGAATAGCGGGGCTGC
AAAGAAAAGATAACAACAGCAGTTGCACGCACAGGCAGTGCCTAGTAAAA
AAAAAGGTCACGAATATCCTGGGGAGGCGGGGCGGTGGTTGGTCATTGGG
CGTTCTGTCCTTTTCGCGGTCCCACTGAGAGAAGTCATGGGAGAAGGGGA
AGAACTGAGACACTTTTCGGCGGGTCAAAAGAAGTTTCCGTTGAACCGTC
AAGGAGCAATCTAATTTGATGGTTGTAGTAATATGTGGGTCGAGGATAGT
CGTGACGCATTGCACGCTACTGACGGGTTGCAGTTCAACAATTTGAGCTA
TTCATGTGTTAAGAAAAAGCATTCATTGTGTATGAGACCAGGAGAAGTGA
ACGCCACCGGGAGATTCAGTGTTTTGGTTTGAGAGCAGCACCTATCCGCT
AGATGAGGGCGCCACAAATCGGTTGTACCGGGCACAAACGCGATCGATCG
GTCTAACCCACCTTCTGCGGTAACGACGCTTTTCGTCCAACGCCTACACC
GTTGGAAGCGACGCGCT
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protein sequence of EsuBft1155_6a-0001

>EsuBft1155_6 ID=EsuBft1155_6|Name=EsuBft1155_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=208bp
MRKYGLTVPHTKTRRQAAKYPVSRERSRDETREPEVVVSSETSSHSLPLL
SGLREEASRQEEGLRFAMNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKA
NVLRKKAIRDGSFGSIVIDEDTGKAIGGWDPAWDIFEAPAPRPLRPPKLH
KNQRDRAQRADKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLK
NSGAAKKR
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mRNA from alignment at Scaffold_340:723303..726343-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1155_6a-0001 ID=EsuBft1155_6a-0001|Name=EsuBft1155_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3041bp|location=Sequence derived from alignment at Scaffold_340:723303..726343- (Ectocarpus subulatus male Bft15b)
GGGGAGCCGCAGCTAGGAGTTTTTACTGTGTGCTTGATGCGCAAGTACGG
TTTGACGGTTCCCCACACGAAGACACGAAGACAAGCAGCCAAGTACCCAG
TATCAAGAGAGAGGAGCAGAGACGAGACTAGAGAGCCAGAGGTTGTTGTA
TCATCCGAAACAAGCTCGCACTCTCTACCTCTTCTGTCTGGGCTACGTGA
AGAAGCTTCTAGACAGGAGGAGGGGCTTCGGTTTGCCATGAACAGGCTGG
TGAGGTTCGGGGCGGAGGCATTGAAGCCGCAAAGGGTCGCCGGGGCACAC
AAGTGGCAGACGCCGCGGGTGTCGAGACGAAAGGCGAACGTGCTCCGCAA
GAAGGCCATCAGGGACGGGTCATTCGGCTCGATAGTCATCGATGAAGGTC
AGCGACCTTAGTTAGAGAAATGCCGTTTGCGGCGCTCCGAATGAGGACAC
GCAAGCACAGCGTGAGTGCGTGATATGTTCTCGCGAGTGATCCTCTTCGT
GCATACTGCTGGTCTGGTGCTGTACGGACGATGTTACATGTAGATGTTGG
CTGCCTGCAAAGCACTCTCGATTGGTGCCCAATCTGGCAGTTCTCTCCAC
TCGTGCGGGCCCGCCCGTGGTCGTCAGAGAGGATATTGCCAGTGCATGAG
AACGTTTGCACGCTTCTTTGGTTTGTCAGCACCGACAGACACCGCAGACC
TCCAAACCTGTGCTGAAGATACCACCCCCCCCACACGGGTAGGAAAGCAT
CCTTGTTGGGAGTCGATAGCGGTATTAAGTCATACGCATAGCGAGGCTTT
GGTACGAAACAGCATGCCTGCCGTGTGCGCGCAGCAGGTTATATGGTTAA
TCATTCTATCGGCTAAATGTTCCAGCAGGTAGGGAATGGTTCACCGAAGG
GCCCATGCCGCCAAACACCATGTTACATTTTACCTGTCAAGCCTTAAATG
GTGTTTCCAACCTTCCTAGCCAGTGGCCTTCCTATGTAATATCCTTTGTA
GCTTTAGTTGCGTTTTTGGGATCTAGGGCGGTTACAAGGACGAAGCTTTC
GCGACTTAGCACTATGCCGGAACAGGAGGCGGGGGGGGCAGGGAGAGAGA
AAAGAGAGAAACTTGGGGCTGGTTACGAAGCCCGGCCCGCGCGCGGCAAA
TGGGCGACACAAGAGCCAGTCGTATGTCAATATCACTGGCAACTTCTTCA
CGCTAATTACTTCTCAGCTACACGTTGCGTCCGCACTATCCACCCTCGCA
CCAACAACATGATCAGCAAGAAACACTGCAGTTGATGTTGTTGGTGTATT
CCTCGTTCCGTATGGCAACAACGTGGTGGTATGTGTTGACAAGTATCTGA
CCGTGTAGTTGCGGGCTATCTCCATGTGATCATTCGATGTTTTTCGAAAC
CTTTGCTTTCCTGTGCTCCCAGACACTGGGAAAGCGATTGGCGGGTGGGA
TCCGGCGTGGGATATCTTCGAAGCGCCCGCTCCTCGACCGTTGAGGCCAC
CAAAGCTACACAAGAACCAGCGGGACAGAGCGCAGCGCGCCGATAAGGTA
AAAACTTTCGCATCCCACGCTTTTCCCGGCGGTTCGCCGTGCTTTCTGCG
TATACATGGCAACGGCAGCAAATTGCTGTTGGTTACCAGAAGGGATGATG
AGGCGAAAACGGGCTTGTTGGCACAGAATGCACACGAAAGTCTGCAGCTG
GCGAAAATAAGATTTGACGGCCGTCCGTTACGAGGATGTGAAGAGGCCTA
GAGACTGTGTTTTTTGCGATTGTTTGTGCGAAAGGCAGTGGGCACCAGCC
AACGATCTTCGAATCGCAGGGGTAGAGGAAGCGCCGCTGCAGTCACGCTT
TGGGTCGTTACTAGTTTTTTTTTAGGATCGACGATTTTCCATCCGGATTC
ATGCGGCAGGCGCGGTGTACATGGGTTTCTATGTCTCCAATTTTGCACGA
AGATGTTTGCTTGTGCCCGCTGTTTTCGTGTTCCAACCCGTGTTGTCCAC
ACCCGCCGACTTGCGAGTGTCTCTCCCCATGTCTGAGCTCATTCGGTAAT
CGCTGGGTTGTAGCATGCAAGCTTGCCCAGTCAAGCGCTCGGATAGACCA
ACGCACTTGACCTGTGGCTTCGCGTCAGAGCAGCGTGTATGGTCATACCA
GTTCTTGCGAGGGGCCATCGCGACACTGGTGGGTGTTTGTCTCACTGTTG
GAAACATGCCCTCTGTGTTGGCTGTACTGCCTCGCCTTCTAGTATGTCCC
GAAGGCATCTATCTTCGCGTACTATTACTTTGAGAGCCGCTCTGCCGCGC
TCGTCAGAGATGCAAGACGCGCCACGCGCTTGACCTGGATCTAATCTTGC
CCCTCTTTCTTGTCTGCTGTATTCCCAACCGATGGCGTTTGGGCAGATCA
CGGCCAAGCTTGGAGAGCAGGAGGCCCGGCTCAAGGATCTCAACCGAGTA
AAGGCGGTCCCGAAGCCCAAGCCAGAAGACGGGGCACTTGCCCTTCTCAG
ATGGCTCAAGAATAGCGGGGCTGCAAAGAAAAGATAACAACAGCAGTTGC
ACGCACAGGCAGTGCCTAGTAAAAAAAAAGGTCACGAATATCCTGGGGAG
GCGGGGCGGTGGTTGGTCATTGGGCGTTCTGTCCTTTTCGCGGTCCCACT
GAGAGAAGTCATGGGAGAAGGGGAAGAACTGAGACACTTTTCGGCGGGTC
AAAAGAAGTTTCCGTTGAACCGTCAAGGAGCAATCTAATTTGATGGTTGT
AGTAATATGTGGGTCGAGGATAGTCGTGACGCATTGCACGCTACTGACGG
GTTGCAGTTCAACAATTTGAGCTATTCATGTGTTAAGAAAAAGCATTCAT
TGTGTATGAGACCAGGAGAAGTGAACGCCACCGGGAGATTCAGTGTTTTG
GTTTGAGAGCAGCACCTATCCGCTAGATGAGGGCGCCACAAATCGGTTGT
ACCGGGCACAAACGCGATCGATCGGTCTAACCCACCTTCTGCGGTAACGA
CGCTTTTCGTCCAACGCCTACACCGTTGGAAGCGACGCGCT
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Coding sequence (CDS) from alignment at Scaffold_340:723303..726343-

>EsuBft1155_6a-0001 ID=EsuBft1155_6a-0001|Name=EsuBft1155_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=627bp|location=Sequence derived from alignment at Scaffold_340:723303..726343- (Ectocarpus subulatus male Bft15b)
ATGCGCAAGTACGGTTTGACGGTTCCCCACACGAAGACACGAAGACAAGC
AGCCAAGTACCCAGTATCAAGAGAGAGGAGCAGAGACGAGACTAGAGAGC
CAGAGGTTGTTGTATCATCCGAAACAAGCTCGCACTCTCTACCTCTTCTG
TCTGGGCTACGTGAAGAAGCTTCTAGACAGGAGGAGGGGCTTCGGTTTGC
CATGAACAGGCTGGTGAGGTTCGGGGCGGAGGCATTGAAGCCGCAAAGGG
TCGCCGGGGCACACAAGTGGCAGACGCCGCGGGTGTCGAGACGAAAGGCG
AACGTGCTCCGCAAGAAGGCCATCAGGGACGGGTCATTCGGCTCGATAGT
CATCGATGAAGACACTGGGAAAGCGATTGGCGGGTGGGATCCGGCGTGGG
ATATCTTCGAAGCGCCCGCTCCTCGACCGTTGAGGCCACCAAAGCTACAC
AAGAACCAGCGGGACAGAGCGCAGCGCGCCGATAAGATCACGGCCAAGCT
TGGAGAGCAGGAGGCCCGGCTCAAGGATCTCAACCGAGTAAAGGCGGTCC
CGAAGCCCAAGCCAGAAGACGGGGCACTTGCCCTTCTCAGATGGCTCAAG
AATAGCGGGGCTGCAAAGAAAAGATAA
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