EsuBft1154_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1154_9a-0001
Unique NameEsuBft1154_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:254840..257891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog159749.K0RP98
ProteomeIdEsuBft1154_9
Protein domainsIPR012094
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSignalP-TM
Protein domainsIPR011063
Protein domainsTMhelix
Protein domainsSSF52402
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR014729
Protein domainsPTHR11807
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Note-lysidine synthase os:heliobacillus mobilis gn:tils pe:3 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2836|Bacillariophyta
Length1410
Hectar predicted targeting categorysignal peptide
Evalue1.89e-19
EggNOG OGsCOG0037@1|root,2T6QC@2759|Eukaryota,2XFN2@2836|Bacillariophyta
Ec32 ortholog descriptionPhenylalanyl-tRNA synthetase, B3/B4
Ec32 orthologEc-11_000920.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionPP-loop family
COG categoryD
Cross References
External references for this mRNA
DatabaseAccession
GO0005524
GO0016879
GO0005737
GO0008033
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_9aEsuBft1154_9aEctocarpus subulatus male Bft15bgeneScaffold_106 254840..257891 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_9a-0001-exonEsuBft1154_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 254840..254941 +
EsuBft1154_9a-0001-exonagat-exon-13166Ectocarpus subulatus male Bft15bexonScaffold_106 255690..256523 +
EsuBft1154_9a-0001-exonagat-exon-13164Ectocarpus subulatus male Bft15bexonScaffold_106 256683..256890 +
EsuBft1154_9a-0001-exonagat-exon-13165Ectocarpus subulatus male Bft15bexonScaffold_106 257626..257891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_9a-0001-cdsEsuBft1154_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 254840..254941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_9a-0001EsuBft1154_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 254840..257891 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1154_9a-0001 ID=EsuBft1154_9a-0001|Name=EsuBft1154_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1410bp|location=Sequence derived from alignment at Scaffold_106:254840..257891+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCAGCGCCAACCACTCCATCGACAAGTGCGGTCCTGTTCACGTA
CGTGCAAGTGTTGATGTTGATGGCATGGGTTGTGACGGTCGCAGGAAAAG
AGGCGACATCGCTAACCCGTATACCTCGGTCGCCTTGTTGTGTATGTACC
CTCTCCTCCTTATCGCAACGCAAGGCCTACCCGGTCGCCCTCGCCGGGCG
CTGCATCCACCACCGCCCGGGCTTCATGGCCAACACCCTTCAGCAACCCC
TATCGTCACCGGCGTTTTGGGGTGGCCGGCAGCGGCCACGTCAAGCACCA
CGCCAGAGCTCCAGTACCCTCGCCCTAGGCTTATCATCTTTCTGCCCACC
CGCGCTTGAACCCTCCGCATCAGCTGCTACAACCGCTTGGCGATCATCGA
CTGGCAGGCTGTACGCAACAGAGTGTCCCAGGTATCGACACGGGCCATTG
GTGACATCCGCCGCTGTCCGCTACAGCGGTGGATGCTTTAGCGGCGGCAT
ACGCTGCTTGAGCAGCCGCAGAAGCAGCAGCAGGAGCAGCAACACCAGCG
GCGGCGAGGCACAAGAAGAAGCGAGGGAAACTAGCACTGCCGGCGCTACT
GTTTCGACCAGAGACAAGGCACGAGCGGAAGGAGAATTTGTCGGCCACGA
AGACGATGGAGAAGACCTTGGTACTTCGATAGCCGGCGGTTCGGAGATGG
AGCCGTTGGTGGAGCGAGTAGCTTCAGCTCTGGAACAGCGCTGCAGCGTG
TGCGGTGGCGATTTAGTGCGTGTGTTTCGTTCCGTGTGTGTGATTGGACG
AAACGGCGTGGGGATCCTTGTCATTGCTCGTGTTTCAGTATGGGTTTTTC
GGGGACATTCAAGCGTCCATCCTGTGCTGGACAAGTGCCCAGATCGTGAA
CCAAACCAGCTCCAAGCTCCGGCTTGCTATTTTCAGGTTCTTGTGCTTGT
CAGCGGCGGAAGCGACTCCGTTGCTCTCCTCCTCGCCCTCGAACGAGCTG
CGAAGACCTTCCAGCCGCCCCTCCGGGTAGAAGCGGCGCATTTCAACCAT
GGTCTCCGAGGGAAAGACTCAGACGCCGACCAAGACTTGGTGGTGAAAAT
GGCAGACAGCCTCCGGGTGCCCCTGCACGTTAGGCGCTGGAGAGGACCGG
AAGAGGGGGGCACGGGCGGACCAGGGTCGGGTATGCAGGAGAGGGCGAGG
CGATGGAGGCGTGCCGAAGCCAAAGACATCCTCGCCAAGAGCATGGCCGA
GGCGGGGGCAGGGCGAGGATGGAGGGGGGTGATCGCGACGGCCCACCACA
AGGATGATCAGGCAGAGACGGTCTTGCTCAAGGCCCTCCGGGGGGCGCAC
ATCACCAACATTCAGGTGCGCCGATGCTTCAGAGACGGGCGAGGGGCTGC
AATTTCTTGA
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protein sequence of EsuBft1154_9a-0001

>EsuBft1154_9 ID=EsuBft1154_9|Name=EsuBft1154_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=469bp
MEAAPTTPSTSAVLFTYVQVLMLMAWVVTVAGKEATSLTRIPRSPCCVCT
LSSLSQRKAYPVALAGRCIHHRPGFMANTLQQPLSSPAFWGGRQRPRQAP
RQSSSTLALGLSSFCPPALEPSASAATTAWRSSTGRLYATECPRYRHGPL
VTSAAVRYSGGCFSGGIRCLSSRRSSSRSSNTSGGEAQEEARETSTAGAT
VSTRDKARAEGEFVGHEDDGEDLGTSIAGGSEMEPLVERVASALEQRCSV
CGGDLVRVFRSVCVIGRNGVGILVIARVSVWVFRGHSSVHPVLDKCPDRE
PNQLQAPACYFQVLVLVSGGSDSVALLLALERAAKTFQPPLRVEAAHFNH
GLRGKDSDADQDLVVKMADSLRVPLHVRRWRGPEEGGTGGPGSGMQERAR
RWRRAEAKDILAKSMAEAGAGRGWRGVIATAHHKDDQAETVLLKALRGAH
ITNIQVRRCFRDGRGAAIS
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mRNA from alignment at Scaffold_106:254840..257891+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1154_9a-0001 ID=EsuBft1154_9a-0001|Name=EsuBft1154_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3052bp|location=Sequence derived from alignment at Scaffold_106:254840..257891+ (Ectocarpus subulatus male Bft15b)
ATGGAAGCAGCGCCAACCACTCCATCGACAAGTGCGGTCCTGTTCACGTA
CGTGCAAGTGTTGATGTTGATGGCATGGGTTGTGACGGTCGCAGGAAAAG
AGGTAAGACATGGAGATCGCCGGTACTGCTGTAGTCCATCGAGACTAAAG
CAAGTAAGTACAGACCTGTCACCTGTTGGGCAGCTTTGAACTTTGAACTT
TGAATTCAATGAATTCATCGCTTGGCTTGGTTCGTCCGCAAAACGCGCCG
GTTTCTGGCAATTGATTGTTGCAGTTCGGCATGTATCAATGCCGATGCTC
TCTGTGGGTTGTGTGCGTGATATTGGTGACAAGTTCCTAGCACAGATAAG
GCGGTCAACACACTGTTTAAACACCAAACTCGACAAACAAAATGCGGCGG
AATCGGTGTGTGCAGTGTAGCTTGTGAACACCAGGCGTGTCAAAGTACTG
GAGCGTTTTCGGAGCCTTTCATCGTTTGTTTTGCGGGAGAAACCTGACTT
GCTTGTGCACTGACCTTCCCGCTGTAAGTAGGCCGACTCGCCAGCTATCA
AAAAAATGTTTGTTGGTGCCAAAAACCCTGGTGCAAGCAGTAGTCCTTAC
AGCCTCCTCGAGAGGACTGCCAAGTTCTCAAGGGGGTGTTTTGAAGCATA
CATATACTGTGAAGATTGGGGGGAAATATGCTGGATACTGGACTCGACTC
TTACTGCTCTGTACCCAAATATCTCGTGGCCTGTTGGTATCTCTCTTCCT
CTCCACCAGGCGTACCAGCAGCTACAGCTGCCCAACAACAGGAGTGTGAT
GTATCGCAAGTTGCATCAACCTTTGCCTAACAGTAGCTCGCGGACGGCAG
GCGACATCGCTAACCCGTATACCTCGGTCGCCTTGTTGTGTATGTACCCT
CTCCTCCTTATCGCAACGCAAGGCCTACCCGGTCGCCCTCGCCGGGCGCT
GCATCCACCACCGCCCGGGCTTCATGGCCAACACCCTTCAGCAACCCCTA
TCGTCACCGGCGTTTTGGGGTGGCCGGCAGCGGCCACGTCAAGCACCACG
CCAGAGCTCCAGTACCCTCGCCCTAGGCTTATCATCTTTCTGCCCACCCG
CGCTTGAACCCTCCGCATCAGCTGCTACAACCGCTTGGCGATCATCGACT
GGCAGGCTGTACGCAACAGAGTGTCCCAGGTATCGACACGGGCCATTGGT
GACATCCGCCGCTGTCCGCTACAGCGGTGGATGCTTTAGCGGCGGCATAC
GCTGCTTGAGCAGCCGCAGAAGCAGCAGCAGGAGCAGCAACACCAGCGGC
GGCGAGGCACAAGAAGAAGCGAGGGAAACTAGCACTGCCGGCGCTACTGT
TTCGACCAGAGACAAGGCACGAGCGGAAGGAGAATTTGTCGGCCACGAAG
ACGATGGAGAAGACCTTGGTACTTCGATAGCCGGCGGTTCGGAGATGGAG
CCGTTGGTGGAGCGAGTAGCTTCAGCTCTGGAACAGCGCTGCAGCGTGTG
CGGTGGCGATTTAGTGCGTGTGTTTCGTTCCGTGTGTGTGATTGGACGAA
ACGGCGTGGGGATCCTTGTCATTGCTCGTGTTTCAGTATGGGTTTTTCGG
GGACATTCAAGCGTCCATCCTGTGCTGGACAAGTGCCCAGATCGTGAACC
AAACCAGCTCCAAGCTCCGGCTTGCTATTTTCAGGTAGCCATCCTCGCTA
CTTAGCTAGTAGTCCCGCGGTCACACTTTGGACTTAAAAATACGGTGTTC
CTGCAAACAAGGCAAGACAAAGGTACGTCATTGCCTGCACCTCCCGCCCC
TGCTCCACTTCCTCGACACGCCTCCGGACGACGATTGCCTCAGGTTCTTG
TGCTTGTCAGCGGCGGAAGCGACTCCGTTGCTCTCCTCCTCGCCCTCGAA
CGAGCTGCGAAGACCTTCCAGCCGCCCCTCCGGGTAGAAGCGGCGCATTT
CAACCATGGTCTCCGAGGGAAAGACTCAGACGCCGACCAAGACTTGGTGG
TGAAAATGGCAGACAGCCTCCGGGTGCCCCTGCACGTTAGGCGCTGGAGA
GGTACGAGTACCGTAGGTGGCAGGAGACATCATACCTCCCGGACCGATTT
TCACAGCTCGATTACTCCACAACGAAGAGGATATTTTATTCATGAAACAA
AACGTTTTTTGAACAGTTCTCGACGAGAGGATTCCAACGCCGCCCTTTCG
GCACCGCCGCTCGTTCTGCTGTGGAGTAGTCGACCGTCAAGGGGGTGCGA
CTTCTTGTATCACCCTGGGTACTGAAGGAGCACATCGTGCATATCCGTCT
TCTCTCCCATGTTCTAGACACACGGGCGGATAGTCACAAGGCAAGAGGGC
AAGCACGAGTTTCGCGGTGTGGTGGGTTTCTCGAAAGAAATGGGCGGGAT
GTGACGGGGGGGAAATCTGCCACGGGCCCATCAAACGTCGGGTTGCACCG
GGTGGTCGGTGGTGATTCGTGTGGGCGCTATGTGTAGTGTAAGTACTTCG
CACGCCGAAAAATGGAGGCGTGCTTGGGTACTGGACCCGCATCTTCGTCC
CACCTTGAGTTTTCTGAGGCCGACGGGAACTAAAGTTTCAGAAAGTATTG
ACTCAAGGTCGCTTGTTCTTTCGCAGATGCCGATGCTTGTTTTTGTTCAA
CCTGCAGGATCGGAAGAGGGTGGCAAGGTGCTTCCGACTAGAGGTCTCTT
GTTGTTCTTTTTCGTACCTATCGTGCTTTTCTTTTCTGCCAAACGCTCTT
TTTCGTACGGATCTATATTTTGTGTTGAATCTGCAGGACCGGAAGAGGGG
GGCACGGGCGGACCAGGGTCGGGTATGCAGGAGAGGGCGAGGCGATGGAG
GCGTGCCGAAGCCAAAGACATCCTCGCCAAGAGCATGGCCGAGGCGGGGG
CAGGGCGAGGATGGAGGGGGGTGATCGCGACGGCCCACCACAAGGATGAT
CAGGCAGAGACGGTCTTGCTCAAGGCCCTCCGGGGGGCGCACATCACCAA
CATTCAGGTGCGCCGATGCTTCAGAGACGGGCGAGGGGCTGCAATTTCTT
GA
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Coding sequence (CDS) from alignment at Scaffold_106:254840..257891+

>EsuBft1154_9a-0001 ID=EsuBft1154_9a-0001|Name=EsuBft1154_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1410bp|location=Sequence derived from alignment at Scaffold_106:254840..257891+ (Ectocarpus subulatus male Bft15b)
ATGGAAGCAGCGCCAACCACTCCATCGACAAGTGCGGTCCTGTTCACGTA
CGTGCAAGTGTTGATGTTGATGGCATGGGTTGTGACGGTCGCAGGAAAAG
AGGCGACATCGCTAACCCGTATACCTCGGTCGCCTTGTTGTGTATGTACC
CTCTCCTCCTTATCGCAACGCAAGGCCTACCCGGTCGCCCTCGCCGGGCG
CTGCATCCACCACCGCCCGGGCTTCATGGCCAACACCCTTCAGCAACCCC
TATCGTCACCGGCGTTTTGGGGTGGCCGGCAGCGGCCACGTCAAGCACCA
CGCCAGAGCTCCAGTACCCTCGCCCTAGGCTTATCATCTTTCTGCCCACC
CGCGCTTGAACCCTCCGCATCAGCTGCTACAACCGCTTGGCGATCATCGA
CTGGCAGGCTGTACGCAACAGAGTGTCCCAGGTATCGACACGGGCCATTG
GTGACATCCGCCGCTGTCCGCTACAGCGGTGGATGCTTTAGCGGCGGCAT
ACGCTGCTTGAGCAGCCGCAGAAGCAGCAGCAGGAGCAGCAACACCAGCG
GCGGCGAGGCACAAGAAGAAGCGAGGGAAACTAGCACTGCCGGCGCTACT
GTTTCGACCAGAGACAAGGCACGAGCGGAAGGAGAATTTGTCGGCCACGA
AGACGATGGAGAAGACCTTGGTACTTCGATAGCCGGCGGTTCGGAGATGG
AGCCGTTGGTGGAGCGAGTAGCTTCAGCTCTGGAACAGCGCTGCAGCGTG
TGCGGTGGCGATTTAGTGCGTGTGTTTCGTTCCGTGTGTGTGATTGGACG
AAACGGCGTGGGGATCCTTGTCATTGCTCGTGTTTCAGTATGGGTTTTTC
GGGGACATTCAAGCGTCCATCCTGTGCTGGACAAGTGCCCAGATCGTGAA
CCAAACCAGCTCCAAGCTCCGGCTTGCTATTTTCAGGTTCTTGTGCTTGT
CAGCGGCGGAAGCGACTCCGTTGCTCTCCTCCTCGCCCTCGAACGAGCTG
CGAAGACCTTCCAGCCGCCCCTCCGGGTAGAAGCGGCGCATTTCAACCAT
GGTCTCCGAGGGAAAGACTCAGACGCCGACCAAGACTTGGTGGTGAAAAT
GGCAGACAGCCTCCGGGTGCCCCTGCACGTTAGGCGCTGGAGAGGACCGG
AAGAGGGGGGCACGGGCGGACCAGGGTCGGGTATGCAGGAGAGGGCGAGG
CGATGGAGGCGTGCCGAAGCCAAAGACATCCTCGCCAAGAGCATGGCCGA
GGCGGGGGCAGGGCGAGGATGGAGGGGGGTGATCGCGACGGCCCACCACA
AGGATGATCAGGCAGAGACGGTCTTGCTCAAGGCCCTCCGGGGGGCGCAC
ATCACCAACATTCAGGTGCGCCGATGCTTCAGAGACGGGCGAGGGGCTGC
AATTTCTTGA
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