Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 159749.K0RP98 |
| ProteomeId | EsuBft1154_9 |
| Protein domains | IPR012094 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-TM |
| Protein domains | IPR011063 |
| Protein domains | TMhelix |
| Protein domains | SSF52402 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR014729 |
| Protein domains | PTHR11807 |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | -lysidine synthase os:heliobacillus mobilis gn:tils pe:3 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2836|Bacillariophyta |
| Length | 1410 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 1.89e-19 |
| EggNOG OGs | COG0037@1|root,2T6QC@2759|Eukaryota,2XFN2@2836|Bacillariophyta |
| Ec32 ortholog description | Phenylalanyl-tRNA synthetase, B3/B4 |
| Ec32 ortholog | Ec-11_000920.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | PP-loop family |
| COG category | D |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0005524 |
| GO | 0016879 |
| GO | 0005737 |
| GO | 0008033 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1154_9a-0001 ID=EsuBft1154_9a-0001|Name=EsuBft1154_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1410bp|location=Sequence derived from alignment at Scaffold_106:254840..257891+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGAAGCAGCGCCAACCACTCCATCGACAAGTGCGGTCCTGTTCACGTA
CGTGCAAGTGTTGATGTTGATGGCATGGGTTGTGACGGTCGCAGGAAAAG
AGGCGACATCGCTAACCCGTATACCTCGGTCGCCTTGTTGTGTATGTACC
CTCTCCTCCTTATCGCAACGCAAGGCCTACCCGGTCGCCCTCGCCGGGCG
CTGCATCCACCACCGCCCGGGCTTCATGGCCAACACCCTTCAGCAACCCC
TATCGTCACCGGCGTTTTGGGGTGGCCGGCAGCGGCCACGTCAAGCACCA
CGCCAGAGCTCCAGTACCCTCGCCCTAGGCTTATCATCTTTCTGCCCACC
CGCGCTTGAACCCTCCGCATCAGCTGCTACAACCGCTTGGCGATCATCGA
CTGGCAGGCTGTACGCAACAGAGTGTCCCAGGTATCGACACGGGCCATTG
GTGACATCCGCCGCTGTCCGCTACAGCGGTGGATGCTTTAGCGGCGGCAT
ACGCTGCTTGAGCAGCCGCAGAAGCAGCAGCAGGAGCAGCAACACCAGCG
GCGGCGAGGCACAAGAAGAAGCGAGGGAAACTAGCACTGCCGGCGCTACT
GTTTCGACCAGAGACAAGGCACGAGCGGAAGGAGAATTTGTCGGCCACGA
AGACGATGGAGAAGACCTTGGTACTTCGATAGCCGGCGGTTCGGAGATGG
AGCCGTTGGTGGAGCGAGTAGCTTCAGCTCTGGAACAGCGCTGCAGCGTG
TGCGGTGGCGATTTAGTGCGTGTGTTTCGTTCCGTGTGTGTGATTGGACG
AAACGGCGTGGGGATCCTTGTCATTGCTCGTGTTTCAGTATGGGTTTTTC
GGGGACATTCAAGCGTCCATCCTGTGCTGGACAAGTGCCCAGATCGTGAA
CCAAACCAGCTCCAAGCTCCGGCTTGCTATTTTCAGGTTCTTGTGCTTGT
CAGCGGCGGAAGCGACTCCGTTGCTCTCCTCCTCGCCCTCGAACGAGCTG
CGAAGACCTTCCAGCCGCCCCTCCGGGTAGAAGCGGCGCATTTCAACCAT
GGTCTCCGAGGGAAAGACTCAGACGCCGACCAAGACTTGGTGGTGAAAAT
GGCAGACAGCCTCCGGGTGCCCCTGCACGTTAGGCGCTGGAGAGGACCGG
AAGAGGGGGGCACGGGCGGACCAGGGTCGGGTATGCAGGAGAGGGCGAGG
CGATGGAGGCGTGCCGAAGCCAAAGACATCCTCGCCAAGAGCATGGCCGA
GGCGGGGGCAGGGCGAGGATGGAGGGGGGTGATCGCGACGGCCCACCACA
AGGATGATCAGGCAGAGACGGTCTTGCTCAAGGCCCTCCGGGGGGCGCAC
ATCACCAACATTCAGGTGCGCCGATGCTTCAGAGACGGGCGAGGGGCTGC
AATTTCTTGA back to topprotein sequence of EsuBft1154_9a-0001 >EsuBft1154_9 ID=EsuBft1154_9|Name=EsuBft1154_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=469bp
MEAAPTTPSTSAVLFTYVQVLMLMAWVVTVAGKEATSLTRIPRSPCCVCT
LSSLSQRKAYPVALAGRCIHHRPGFMANTLQQPLSSPAFWGGRQRPRQAP
RQSSSTLALGLSSFCPPALEPSASAATTAWRSSTGRLYATECPRYRHGPL
VTSAAVRYSGGCFSGGIRCLSSRRSSSRSSNTSGGEAQEEARETSTAGAT
VSTRDKARAEGEFVGHEDDGEDLGTSIAGGSEMEPLVERVASALEQRCSV
CGGDLVRVFRSVCVIGRNGVGILVIARVSVWVFRGHSSVHPVLDKCPDRE
PNQLQAPACYFQVLVLVSGGSDSVALLLALERAAKTFQPPLRVEAAHFNH
GLRGKDSDADQDLVVKMADSLRVPLHVRRWRGPEEGGTGGPGSGMQERAR
RWRRAEAKDILAKSMAEAGAGRGWRGVIATAHHKDDQAETVLLKALRGAH
ITNIQVRRCFRDGRGAAIS back to topmRNA from alignment at Scaffold_106:254840..257891+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1154_9a-0001 ID=EsuBft1154_9a-0001|Name=EsuBft1154_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3052bp|location=Sequence derived from alignment at Scaffold_106:254840..257891+ (Ectocarpus subulatus male Bft15b)
ATGGAAGCAGCGCCAACCACTCCATCGACAAGTGCGGTCCTGTTCACGTA
CGTGCAAGTGTTGATGTTGATGGCATGGGTTGTGACGGTCGCAGGAAAAG
AGGTAAGACATGGAGATCGCCGGTACTGCTGTAGTCCATCGAGACTAAAG
CAAGTAAGTACAGACCTGTCACCTGTTGGGCAGCTTTGAACTTTGAACTT
TGAATTCAATGAATTCATCGCTTGGCTTGGTTCGTCCGCAAAACGCGCCG
GTTTCTGGCAATTGATTGTTGCAGTTCGGCATGTATCAATGCCGATGCTC
TCTGTGGGTTGTGTGCGTGATATTGGTGACAAGTTCCTAGCACAGATAAG
GCGGTCAACACACTGTTTAAACACCAAACTCGACAAACAAAATGCGGCGG
AATCGGTGTGTGCAGTGTAGCTTGTGAACACCAGGCGTGTCAAAGTACTG
GAGCGTTTTCGGAGCCTTTCATCGTTTGTTTTGCGGGAGAAACCTGACTT
GCTTGTGCACTGACCTTCCCGCTGTAAGTAGGCCGACTCGCCAGCTATCA
AAAAAATGTTTGTTGGTGCCAAAAACCCTGGTGCAAGCAGTAGTCCTTAC
AGCCTCCTCGAGAGGACTGCCAAGTTCTCAAGGGGGTGTTTTGAAGCATA
CATATACTGTGAAGATTGGGGGGAAATATGCTGGATACTGGACTCGACTC
TTACTGCTCTGTACCCAAATATCTCGTGGCCTGTTGGTATCTCTCTTCCT
CTCCACCAGGCGTACCAGCAGCTACAGCTGCCCAACAACAGGAGTGTGAT
GTATCGCAAGTTGCATCAACCTTTGCCTAACAGTAGCTCGCGGACGGCAG
GCGACATCGCTAACCCGTATACCTCGGTCGCCTTGTTGTGTATGTACCCT
CTCCTCCTTATCGCAACGCAAGGCCTACCCGGTCGCCCTCGCCGGGCGCT
GCATCCACCACCGCCCGGGCTTCATGGCCAACACCCTTCAGCAACCCCTA
TCGTCACCGGCGTTTTGGGGTGGCCGGCAGCGGCCACGTCAAGCACCACG
CCAGAGCTCCAGTACCCTCGCCCTAGGCTTATCATCTTTCTGCCCACCCG
CGCTTGAACCCTCCGCATCAGCTGCTACAACCGCTTGGCGATCATCGACT
GGCAGGCTGTACGCAACAGAGTGTCCCAGGTATCGACACGGGCCATTGGT
GACATCCGCCGCTGTCCGCTACAGCGGTGGATGCTTTAGCGGCGGCATAC
GCTGCTTGAGCAGCCGCAGAAGCAGCAGCAGGAGCAGCAACACCAGCGGC
GGCGAGGCACAAGAAGAAGCGAGGGAAACTAGCACTGCCGGCGCTACTGT
TTCGACCAGAGACAAGGCACGAGCGGAAGGAGAATTTGTCGGCCACGAAG
ACGATGGAGAAGACCTTGGTACTTCGATAGCCGGCGGTTCGGAGATGGAG
CCGTTGGTGGAGCGAGTAGCTTCAGCTCTGGAACAGCGCTGCAGCGTGTG
CGGTGGCGATTTAGTGCGTGTGTTTCGTTCCGTGTGTGTGATTGGACGAA
ACGGCGTGGGGATCCTTGTCATTGCTCGTGTTTCAGTATGGGTTTTTCGG
GGACATTCAAGCGTCCATCCTGTGCTGGACAAGTGCCCAGATCGTGAACC
AAACCAGCTCCAAGCTCCGGCTTGCTATTTTCAGGTAGCCATCCTCGCTA
CTTAGCTAGTAGTCCCGCGGTCACACTTTGGACTTAAAAATACGGTGTTC
CTGCAAACAAGGCAAGACAAAGGTACGTCATTGCCTGCACCTCCCGCCCC
TGCTCCACTTCCTCGACACGCCTCCGGACGACGATTGCCTCAGGTTCTTG
TGCTTGTCAGCGGCGGAAGCGACTCCGTTGCTCTCCTCCTCGCCCTCGAA
CGAGCTGCGAAGACCTTCCAGCCGCCCCTCCGGGTAGAAGCGGCGCATTT
CAACCATGGTCTCCGAGGGAAAGACTCAGACGCCGACCAAGACTTGGTGG
TGAAAATGGCAGACAGCCTCCGGGTGCCCCTGCACGTTAGGCGCTGGAGA
GGTACGAGTACCGTAGGTGGCAGGAGACATCATACCTCCCGGACCGATTT
TCACAGCTCGATTACTCCACAACGAAGAGGATATTTTATTCATGAAACAA
AACGTTTTTTGAACAGTTCTCGACGAGAGGATTCCAACGCCGCCCTTTCG
GCACCGCCGCTCGTTCTGCTGTGGAGTAGTCGACCGTCAAGGGGGTGCGA
CTTCTTGTATCACCCTGGGTACTGAAGGAGCACATCGTGCATATCCGTCT
TCTCTCCCATGTTCTAGACACACGGGCGGATAGTCACAAGGCAAGAGGGC
AAGCACGAGTTTCGCGGTGTGGTGGGTTTCTCGAAAGAAATGGGCGGGAT
GTGACGGGGGGGAAATCTGCCACGGGCCCATCAAACGTCGGGTTGCACCG
GGTGGTCGGTGGTGATTCGTGTGGGCGCTATGTGTAGTGTAAGTACTTCG
CACGCCGAAAAATGGAGGCGTGCTTGGGTACTGGACCCGCATCTTCGTCC
CACCTTGAGTTTTCTGAGGCCGACGGGAACTAAAGTTTCAGAAAGTATTG
ACTCAAGGTCGCTTGTTCTTTCGCAGATGCCGATGCTTGTTTTTGTTCAA
CCTGCAGGATCGGAAGAGGGTGGCAAGGTGCTTCCGACTAGAGGTCTCTT
GTTGTTCTTTTTCGTACCTATCGTGCTTTTCTTTTCTGCCAAACGCTCTT
TTTCGTACGGATCTATATTTTGTGTTGAATCTGCAGGACCGGAAGAGGGG
GGCACGGGCGGACCAGGGTCGGGTATGCAGGAGAGGGCGAGGCGATGGAG
GCGTGCCGAAGCCAAAGACATCCTCGCCAAGAGCATGGCCGAGGCGGGGG
CAGGGCGAGGATGGAGGGGGGTGATCGCGACGGCCCACCACAAGGATGAT
CAGGCAGAGACGGTCTTGCTCAAGGCCCTCCGGGGGGCGCACATCACCAA
CATTCAGGTGCGCCGATGCTTCAGAGACGGGCGAGGGGCTGCAATTTCTT
GA back to topCoding sequence (CDS) from alignment at Scaffold_106:254840..257891+ >EsuBft1154_9a-0001 ID=EsuBft1154_9a-0001|Name=EsuBft1154_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1410bp|location=Sequence derived from alignment at Scaffold_106:254840..257891+ (Ectocarpus subulatus male Bft15b)
ATGGAAGCAGCGCCAACCACTCCATCGACAAGTGCGGTCCTGTTCACGTA
CGTGCAAGTGTTGATGTTGATGGCATGGGTTGTGACGGTCGCAGGAAAAG
AGGCGACATCGCTAACCCGTATACCTCGGTCGCCTTGTTGTGTATGTACC
CTCTCCTCCTTATCGCAACGCAAGGCCTACCCGGTCGCCCTCGCCGGGCG
CTGCATCCACCACCGCCCGGGCTTCATGGCCAACACCCTTCAGCAACCCC
TATCGTCACCGGCGTTTTGGGGTGGCCGGCAGCGGCCACGTCAAGCACCA
CGCCAGAGCTCCAGTACCCTCGCCCTAGGCTTATCATCTTTCTGCCCACC
CGCGCTTGAACCCTCCGCATCAGCTGCTACAACCGCTTGGCGATCATCGA
CTGGCAGGCTGTACGCAACAGAGTGTCCCAGGTATCGACACGGGCCATTG
GTGACATCCGCCGCTGTCCGCTACAGCGGTGGATGCTTTAGCGGCGGCAT
ACGCTGCTTGAGCAGCCGCAGAAGCAGCAGCAGGAGCAGCAACACCAGCG
GCGGCGAGGCACAAGAAGAAGCGAGGGAAACTAGCACTGCCGGCGCTACT
GTTTCGACCAGAGACAAGGCACGAGCGGAAGGAGAATTTGTCGGCCACGA
AGACGATGGAGAAGACCTTGGTACTTCGATAGCCGGCGGTTCGGAGATGG
AGCCGTTGGTGGAGCGAGTAGCTTCAGCTCTGGAACAGCGCTGCAGCGTG
TGCGGTGGCGATTTAGTGCGTGTGTTTCGTTCCGTGTGTGTGATTGGACG
AAACGGCGTGGGGATCCTTGTCATTGCTCGTGTTTCAGTATGGGTTTTTC
GGGGACATTCAAGCGTCCATCCTGTGCTGGACAAGTGCCCAGATCGTGAA
CCAAACCAGCTCCAAGCTCCGGCTTGCTATTTTCAGGTTCTTGTGCTTGT
CAGCGGCGGAAGCGACTCCGTTGCTCTCCTCCTCGCCCTCGAACGAGCTG
CGAAGACCTTCCAGCCGCCCCTCCGGGTAGAAGCGGCGCATTTCAACCAT
GGTCTCCGAGGGAAAGACTCAGACGCCGACCAAGACTTGGTGGTGAAAAT
GGCAGACAGCCTCCGGGTGCCCCTGCACGTTAGGCGCTGGAGAGGACCGG
AAGAGGGGGGCACGGGCGGACCAGGGTCGGGTATGCAGGAGAGGGCGAGG
CGATGGAGGCGTGCCGAAGCCAAAGACATCCTCGCCAAGAGCATGGCCGA
GGCGGGGGCAGGGCGAGGATGGAGGGGGGTGATCGCGACGGCCCACCACA
AGGATGATCAGGCAGAGACGGTCTTGCTCAAGGCCCTCCGGGGGGCGCAC
ATCACCAACATTCAGGTGCGCCGATGCTTCAGAGACGGGCGAGGGGCTGC
AATTTCTTGA back to top
|