EsuBft1154_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1154_8a-0001
Unique NameEsuBft1154_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:261283..266729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog159749.K0RP98
ProteomeIdEsuBft1154_8
Protein domainsIPR012796
Protein domainsIPR020825
Protein domainsSSF52402
Protein domainsIPR011063
Ownerapollo_admin@sb-roscoff.fr
Note-lysidine synthase os:treponema denticola (strain atcc 35405 cip 103919 dsm 14222) gn:tils pe:3 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2836|Bacillariophyta
Length1407
Hectar predicted targeting categoryother localisation
Evalue9.99e-18
EggNOG OGsCOG0037@1|root,2T6QC@2759|Eukaryota,2XFN2@2836|Bacillariophyta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionPP-loop family
COG categoryD
Cross References
External references for this mRNA
DatabaseAccession
GO0005524
GO0016879
GO0005737
GO0008033
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_8aEsuBft1154_8aEctocarpus subulatus male Bft15bgeneScaffold_106 261283..266729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_8a-0001EsuBft1154_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 261283..266537 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_8a-0001-exonagat-exon-13160Ectocarpus subulatus male Bft15bexonScaffold_106 261283..261425 +
EsuBft1154_8a-0001-exonagat-exon-13163Ectocarpus subulatus male Bft15bexonScaffold_106 262357..262766 +
EsuBft1154_8a-0001-exonagat-exon-13161Ectocarpus subulatus male Bft15bexonScaffold_106 263491..263610 +
EsuBft1154_8a-0001-exonagat-exon-13162Ectocarpus subulatus male Bft15bexonScaffold_106 265083..265347 +
EsuBft1154_8a-0001-exonEsuBft1154_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 265828..265963 +
EsuBft1154_8a-0001-exonagat-exon-13159Ectocarpus subulatus male Bft15bexonScaffold_106 266397..266729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_8a-0001-cdsEsuBft1154_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 261283..261425 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_8a-0001-exonagat-three_prime_utr-1479Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_106 266538..266729 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1154_8a-0001 ID=EsuBft1154_8a-0001|Name=EsuBft1154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1407bp|location=Sequence derived from alignment at Scaffold_106:261283..266729+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGCACTCGGATCCTTTCGTGCGGCCGTTGCTGGGGGCCCACAA
ATCGGAACTCTTGGAGTTTTTGGTCCGGGGGGGGCATGCCTGGAGAGAAG
ACGGGAGCAACCAGGTGGCTAAGTACGCCAGGAATCGCGTGCGGCTCCAG
TTGATCCCTCTCCTGCGGGAGCTCGCCGGCGGGGCCAAGGCTCTCGACAC
CCGCGTCGAGGAGCTCTCCCGCCAGAGCCACTTCGCCAGGCAGATGGTAG
AGCGTGAGGCGCTGCACTGGGAGAGGGAGCACTTGTCAGGGTGCCGTTTC
GACGACGAAGGGGGGGGTTGCAGTGATGAGACTGACCAGGTCGGAGGGTC
TGACCAATCAGCAGGTGCCGGGGGAACGGTTGATCGATCCGAAGGGGTCG
GGGACGTGGCGCCGTCGGGGATAAGGCGAAAGGAGTTCCCGCTGCAGGCG
TTCTTGAGGAAGGGGCCGGGAGGAGAGGGTAGTGAGCAAGGGTGGGCAGG
GTCTGACTTGCCGGAGCTGGTCAGAGAGGAGCTGTTGCATCGGTTCATCG
TTGCAAATACCGGCAACTCGCCGTTGTCCTACGCAAACCTGCGGCTCCTG
ATGCGGCAAGTGGACGGGGGCGATAGGAAGTGGTCGATTTCACTAGAGGG
TGGCTACTACTTGCGTCGAGTAGGCGACTTGCTCCGCATTGAGCAGAGCC
CTGCGGACGGCGGAATCATAGTATCGGGCCTCGAAGGTAGGGTAGTCTCG
GAGCAAGGCATAGTGCGACACTCCACGGATGCAGCCACCACACCGTGGGA
GATGGTGGTCAGCCCTTGGGGGGAAGGAGGTAGCATTGCGTTGGGCGGAG
AGGGTGATAGTGGCCATGGGGAGGGAAGGGCGACAGAAGCGGGGATGGTG
CTCTTCAACGTGGCTGCGGGGGCGCGGCTGCACGTCAGGCGAAAAAAGGA
TGGGGATCGCTTTCAGCCAGCATGGCGCGATAGGCCCGCGAAGCTCAAGG
ATTTCCTTCGCGGGCAAGGGGTGCCGTTACACCGCAGGGACGAAGTGGCC
TTAATCTGCGACCACCACGACTCGGTTATCGCGGTGTACCCATCCTACCC
CGGGTTCGGGGTTTGCCAGGATAGCACCGGGGAGGAACCGATTCGCGTAA
GGATAGCGGGGACGCCCCTGTTTTGTCCCCGCCCGGAGGATCGGGGAGGA
GCACCCGCCTCATGACATGGCATGGCGTCTTCATTCGATTGTTGACATTT
GTGGACAAACCAAGGGTCCGCGGGGACTAGCAATCGGGACACGTAGCTCT
GACTGGGGCAGAAAAGTATACAATGACCGACCATGGAAATACGAACGAAA
GGAATCGAGAAATCGCGTTGCGGGCCTTTGCGACGTGCACGATTCGTTTT
CTGTTGT
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protein sequence of EsuBft1154_8a-0001

>EsuBft1154_8 ID=EsuBft1154_8|Name=EsuBft1154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=404bp
MAWHSDPFVRPLLGAHKSELLEFLVRGGHAWREDGSNQVAKYARNRVRLQ
LIPLLRELAGGAKALDTRVEELSRQSHFARQMVEREALHWEREHLSGCRF
DDEGGGCSDETDQVGGSDQSAGAGGTVDRSEGVGDVAPSGIRRKEFPLQA
FLRKGPGGEGSEQGWAGSDLPELVREELLHRFIVANTGNSPLSYANLRLL
MRQVDGGDRKWSISLEGGYYLRRVGDLLRIEQSPADGGIIVSGLEGRVVS
EQGIVRHSTDAATTPWEMVVSPWGEGGSIALGGEGDSGHGEGRATEAGMV
LFNVAAGARLHVRRKKDGDRFQPAWRDRPAKLKDFLRGQGVPLHRRDEVA
LICDHHDSVIAVYPSYPGFGVCQDSTGEEPIRVRIAGTPLFCPRPEDRGG
APAS
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mRNA from alignment at Scaffold_106:261283..266729+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1154_8a-0001 ID=EsuBft1154_8a-0001|Name=EsuBft1154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5447bp|location=Sequence derived from alignment at Scaffold_106:261283..266729+ (Ectocarpus subulatus male Bft15b)
ATGGCGTGGCACTCGGATCCTTTCGTGCGGCCGTTGCTGGGGGCCCACAA
ATCGGAACTCTTGGAGTTTTTGGTCCGGGGGGGGCATGCCTGGAGAGAAG
ACGGGAGCAACCAGGTGGCTAAGTACGCCAGGAATCGCGTGCGGTGAGAA
GGTAGACACCTGTTGATCGACAGCAGGTATACACTGCTGTTGCCTCTATT
GTGTACACCTTGTGTGGCTATACTTGCGTCTCTGATGCCGTTCGCTCGTT
TTTTCCGTCCATGTTGATGTTGTCGTCGTTGTCATTGAGTAGGTCACGGT
TACGTGTTTCTTTGCGTCTTTTGCTCGGCGTTGCTTCGCTTGTCGTGCTG
GCTTCGGCCAGCTGTCCTGTTGCAGGACTGACCCCCTTGTCTGCACTCAA
CCTTTCTCTTTTTGGTGTGGCACCTTTGGCAGCCTCGTTATTGTGTCTGC
AGACTTCAATGAGGGCTTCGTGTGTTTGTAGAGAAAAGAACGTTGCACAT
GTGTCTTTGCCGTCCGCAGCGTGTCATGCACCGCCCTTGTTCTTCGTATT
TCGCTCAGCATTTCAACAGTGCGTTGCTCACTCTCCTCTCTGTCGAAATT
CCGCTCCCCGCCCCACCCGCTCCGCCAAGCTTTTCTCGCGCTCCGAACTG
CACTTCACTTTTTTCCCGTACGTTCCACCCCGTCTGCCCCATCACCGCTT
GTGCTTTGCTCACCGCTTTCTACGCTTTTCACACGCCACGGCTTGTCCCT
TTTCTTTGGGGGAGAACCGTGTGATATGACGACCCTATGCTCGTACTCCC
CCCATCTCTCGCAAAGCCATTTTGCATGCGATCCCACTACAGATAGCGCC
CGTAATTGACTGAGAACGTGGCACTTAAGAACTTAATGCTCAACATTATA
TCGCACATAGGAACGTGAGCACCGTTTATGAGCCCGGTGAAGATTCCCAG
CACTAAAACCTATGCAGCGGTCATTTGTGGCCCAAACGAGGAACTACTGT
ACAGTAAGAACCCTAGCCTCAGTCAACGCTAGAGGTTCTTAAGCGCGGGC
GCTATCTGTTCCGTCCTGTTGCAGGCTCCAGTTGATCCCTCTCCTGCGGG
AGCTCGCCGGCGGGGCCAAGGCTCTCGACACCCGCGTCGAGGAGCTCTCC
CGCCAGAGCCACTTCGCCAGGCAGATGGTAGAGCGTGAGGCGCTGCACTG
GGAGAGGGAGCACTTGTCAGGGTGCCGTTTCGACGACGAAGGGGGGGGTT
GCAGTGATGAGACTGACCAGGTCGGAGGGTCTGACCAATCAGCAGGTGCC
GGGGGAACGGTTGATCGATCCGAAGGGGTCGGGGACGTGGCGCCGTCGGG
GATAAGGCGAAAGGAGTTCCCGCTGCAGGCGTTCTTGAGGAAGGGGCCGG
GAGGAGAGGGTAGTGAGCAAGGGTGGGCAGGGTCTGACTTGCCGGAGCTG
GTCAGAGAGGAGCTGTTGCATCGGTTCATCGTTGGTGAGCTAACGAGTCA
CGGCAGCACCGCAGTACCACCGAATTTGATCACGCTATGTGCGCCGCGAG
GGATCTCAGCTTTGGTAGGAGGTTAGTCAAAGCTCGAATAGGTGTTGATG
GCGACGCAAATCCAGGTCAAACGCGGCACGTACGCGGCTGGTTCGCAGTT
ACCTCGCAATAGCCAGTTACGGCTGGTGTGGTTTTCAAGTTTCGAATGCC
CCGGGCTGTGGCCGTGTTGTAGCTCTTCGATGGCCGGAAGTCAAGATGAT
ACCCAGCACGTGAAGCGAAATGTCTGGTTTTGCGTGCCCCCGCGAGCAAC
CGGTGTCTAGGGTGTGCGACATGGGCCTATCTTTGCCTCCGACGGAAACG
TCCAAGTTGTCCCCCACGCGTTTTCCCGCAAGTGTTGGTGGCACCTCTAC
TGTTTGATCGATCCTAGACACGCACCCGAAAAGCTTTCTTGAGACTATGG
GTTGCTTCAGAACGTGACAATGAAGTGCGTCGACCATCTCTTTTCATCCT
TTTTGGCGCGTTTTACGTCTACCAAAGGCGGCACTCAAGCCCCCCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCACCGC
CCCTCGCTCGTGGCCCCACCCCTGCTCCTGCGACACCGTCTCGGACATGG
CATCGCAGCAAATACCGGCAACTCGCCGTTGTCCTACGCAAACCTGCGGC
TCCTGATGCGGCAAGTGGACGGGGGCGATAGGAAGTGGTCGATTTCACTA
GAGGGTGGCTACTACTTGCGTCGAGTAGGTGAGGCTGCGTGAACGCCAAC
ATGTGGTTTTCCAGAAAGGACGAGGTGGAATTCTGCCTTGGCTCTTTGTT
CGCTGGGTGATGAATGCTTGCGGCTGCTGGCTAGGGCTTGCCCCATGCCG
TGTTGTAGCAGGCTGTCCATCCATCGTAGCTGTTCTTGCTGGGAAGGTGT
AGTTGTCGTGTCGTGCGTGTAATCACCTTCTGTTGTTGCTTTTGTCGTCG
TCGTCGTCGTTGTTGTTCTTATTTACAATGATGTTGATGTTGTACATCGG
GGTCATAATCTTTGCAGAGGTTTCTTTACGATTCAAGTGTTGCTCATATA
CCGCTGTGTTTGCCCCGGTTTGAGCATGCCGTCCCGCGGTCGCAAACCCA
AGACATTATTCAGAGTTTGCTTCTTGTCCCATCGCCCCACCGTGCTCACT
TCCATGTCTTCTCAGTCACAACAATTGCACAGGTTTGTCTTATTTTCTGT
CGACCCATCCACCGTTCACATTCCCGTTGTTACCCGTCTTGGTAATGTCG
AACACGGATTCATGCTTCGACGACGGGCAGGCTCTGCCATAACGACGGAG
CTGAGGGTCGTAGATCATGACGACCGCATGTTGTTGCCCTGTCTAGGACC
CGACCTACTACCCCCACACTTCGCATTACATACGACTGAAGTACAGTGGG
GGACCCTCAGTAGTGCCTGTATGGACCAGACGACCACACCGGCACTTTTC
AGAGGGACTGGCACTTATGCGAATAGTGCCAAAACCGGCACTATGGAGGG
CTGGTGGAGTAAACCGAGGGGGCCGCAGAAGAAAAATGTTTCGCGGCACG
CACGTATTTCGTTGCGGGTTGCCATTTCTGCTGCAATCAACGACTTGGAA
CTCGGAAGTTGTGGCACGGTGCGATATGTATAAGTATCTCTCTACATTTC
CCCCACTACCAAACTATTTGTCAAGCCCTCGAAGGCACAAAGTTGGTTGA
CCTTGAGCACATGCAGTTTGTTTCGAACAAAGTAAATTAACACATCTTGA
CCAGAACAACAAAAAAGTGCTATTGATAGCATCTTCCATCTACAATCAAG
CACGCGGGCAGAGGGAAGGGTAAATAGACACCAACAAACAAGCACAAGAG
GAGTTACAGTTCATCACCCGCAGCGCACGGCATCGTGTGCCTCTGCGTCG
CAAGCTATAGGGCTCCAGCAGTACACTTTTGTGCCACTCTCGCTGCGGTT
GTGCGTGTGTGTGTGGTGTGAAAACTGCCGAAACGGCACTATTGAGGTTT
TCAGTTTTCAATGGGGCTAAACCTGCACTATTGATGGCGTCTCACAGAGT
AGTGCCGGTACCGGCACTGCCGCGGGTTCTGTCTGTGCAGAGAAATTTCA
TCGGCACTATAGCGGGCACCGGCAATATTCAACCGGCACTGCTGAGGCCC
CCCCACGATCTATGTGTCGTGCGCTCGGGCAACATTCTCCGAACACGCAG
GCGACTTGCTCCGCATTGAGCAGAGCCCTGCGGACGGCGGAATCATAGTA
TCGGGCCTCGAAGGTAGGGTAGTCTCGGAGCAAGGCATAGTGCGACACTC
CACGGATGCAGCCACCACACCGTGGGAGATGGTGGTCAGCCCTTGGGGGG
AAGGAGGTAGCATTGCGTTGGGCGGAGAGGGTGATAGTGGCCATGGGGAG
GGAAGGGCGACAGAAGCGGGGATGGTGCTCTTCAACGTGGCTGCGGGGGC
GCGGCTGCACGTCAGGTGAGCGAGCGGCGGTTTTGTGAGCGTGGATGTGT
TGTGGGTGTGTGTTGAGGTGCGAGAGAGAGGCCAAGCTCAGGCTGTGTAT
ACGGTTGGTGTAGATTGTTTATCTTCACACTTAAGTGTGGGCAGAAATGG
AAAACTTATTTGTGAACGTTGCTTTCTTTCGTCAGAGCGTTTTCATCGTG
CATCCTTGAGCCCTTTCGACATGGCGCACCACCTTATCTTGGGCGGAGTC
TTTCATGTCTCTTGTCTCTTGGCGACATGTAGAGAACTTTCACTGTACGC
GCCGGACCGTTGTGTCCGTTCGGCGATTTAACGTCTCGTTTGATTTTCGT
GTTGGCACATTTTTTCACCGTCCCGGCATGACGAAACGCAGCAGCAAGAC
TTGGTGTTGCCGTCTCTCGCGACCTTTTCTCCGTACATACGCCTCTCCCT
TTGCCCACGGCGACACCCATTTGCAATAATCTTGCCCTTTCGAAGGCGAA
AAAAGGATGGGGATCGCTTTCAGCCAGCATGGCGCGATAGGCCCGCGAAG
CTCAAGGATTTCCTTCGCGGGCAAGGGGTGCCGTTACACCGCAGGGACGA
AGTGGCCTTAATCTGCGACCACCACGACTCGGTAAGGAGAAGAGGTTCGC
CGTCAAAGCACTTTTTTTTGTTAGCAAGTGCCATTTGGTGGATGCGTGCG
TGTGTTGTACGACGCCGTGCAGCGCGAAGTCAACACCAGTCCGAAGAGCT
GCTTGTGTACGTGTAGCTTTCCATCTCCGCAACTTTTTGTTGGTTTTCTT
GTAAGTGTCGGAGGGATTCAGTCTCGGCACCGCTTACAGGGATTCACTCT
GTGCAGGCCGGCTTTGTTTGTACTACCGGCCACACTCTCACGGCAGTCTA
CGAAGCATTCATTCCACCATATGATAGAAAAGTGCTGCCTATCTTCTTGT
CAATCAATCTCCTTTTCCCTGACCAACCGCCCTTTGCCTCCGGCGCGTCA
CCCTTGCCGCTGCACCTCTGTTGTCTCGTTCGGCCTATCCTTTCGTCAAC
TACCACGCGTTAAGGTTATCGCGGTGTACCCATCCTACCCCGGGTTCGGG
GTTTGCCAGGATAGCACCGGGGAGGAACCGATTCGCGTAAGGATAGCGGG
GACGCCCCTGTTTTGTCCCCGCCCGGAGGATCGGGGAGGAGCACCCGCCT
CATGACATGGCATGGCGTCTTCATTCGATTGTTGACATTTGTGGACAAAC
CAAGGGTCCGCGGGGACTAGCAATCGGGACACGTAGCTCTGACTGGGGCA
GAAAAGTATACAATGACCGACCATGGAAATACGAACGAAAGGAATCGAGA
AATCGCGTTGCGGGCCTTTGCGACGTGCACGATTCGTTTTCTGTTGT
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Coding sequence (CDS) from alignment at Scaffold_106:261283..266729+

>EsuBft1154_8a-0001 ID=EsuBft1154_8a-0001|Name=EsuBft1154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1215bp|location=Sequence derived from alignment at Scaffold_106:261283..266729+ (Ectocarpus subulatus male Bft15b)
ATGGCGTGGCACTCGGATCCTTTCGTGCGGCCGTTGCTGGGGGCCCACAA
ATCGGAACTCTTGGAGTTTTTGGTCCGGGGGGGGCATGCCTGGAGAGAAG
ACGGGAGCAACCAGGTGGCTAAGTACGCCAGGAATCGCGTGCGGCTCCAG
TTGATCCCTCTCCTGCGGGAGCTCGCCGGCGGGGCCAAGGCTCTCGACAC
CCGCGTCGAGGAGCTCTCCCGCCAGAGCCACTTCGCCAGGCAGATGGTAG
AGCGTGAGGCGCTGCACTGGGAGAGGGAGCACTTGTCAGGGTGCCGTTTC
GACGACGAAGGGGGGGGTTGCAGTGATGAGACTGACCAGGTCGGAGGGTC
TGACCAATCAGCAGGTGCCGGGGGAACGGTTGATCGATCCGAAGGGGTCG
GGGACGTGGCGCCGTCGGGGATAAGGCGAAAGGAGTTCCCGCTGCAGGCG
TTCTTGAGGAAGGGGCCGGGAGGAGAGGGTAGTGAGCAAGGGTGGGCAGG
GTCTGACTTGCCGGAGCTGGTCAGAGAGGAGCTGTTGCATCGGTTCATCG
TTGCAAATACCGGCAACTCGCCGTTGTCCTACGCAAACCTGCGGCTCCTG
ATGCGGCAAGTGGACGGGGGCGATAGGAAGTGGTCGATTTCACTAGAGGG
TGGCTACTACTTGCGTCGAGTAGGCGACTTGCTCCGCATTGAGCAGAGCC
CTGCGGACGGCGGAATCATAGTATCGGGCCTCGAAGGTAGGGTAGTCTCG
GAGCAAGGCATAGTGCGACACTCCACGGATGCAGCCACCACACCGTGGGA
GATGGTGGTCAGCCCTTGGGGGGAAGGAGGTAGCATTGCGTTGGGCGGAG
AGGGTGATAGTGGCCATGGGGAGGGAAGGGCGACAGAAGCGGGGATGGTG
CTCTTCAACGTGGCTGCGGGGGCGCGGCTGCACGTCAGGCGAAAAAAGGA
TGGGGATCGCTTTCAGCCAGCATGGCGCGATAGGCCCGCGAAGCTCAAGG
ATTTCCTTCGCGGGCAAGGGGTGCCGTTACACCGCAGGGACGAAGTGGCC
TTAATCTGCGACCACCACGACTCGGTTATCGCGGTGTACCCATCCTACCC
CGGGTTCGGGGTTTGCCAGGATAGCACCGGGGAGGAACCGATTCGCGTAA
GGATAGCGGGGACGCCCCTGTTTTGTCCCCGCCCGGAGGATCGGGGAGGA
GCACCCGCCTCATGA
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