EsuBft1154_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1154_5a-0001
Unique NameEsuBft1154_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:288751..292675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FGW5
ProteomeIdEsuBft1154_5
Protein domainsIPR000719
Protein domainsG3DSA
Protein domainsIPR017441
Ownerapollo_admin@sb-roscoff.fr
Nb exon9
Max annot lvl2759|Eukaryota
Length136
Hectar predicted targeting categoryother localisation
Evalue1.63e-203
EggNOG OGsKOG0613@1|root,KOG0613@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K06491
KEGG Pathwayko04514,ko05020,map04514,map05020
Descriptioncytoskeletal protein binding
COG categoryS
BRITEko00000,ko00001,ko00536,ko00537,ko04090,ko04131,ko04516
Cross References
External references for this mRNA
DatabaseAccession
GO0005524
GO0006468
GO0004672
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_5aEsuBft1154_5aEctocarpus subulatus male Bft15bgeneScaffold_106 288751..292675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_5a-0001EsuBft1154_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 288751..291797 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_5a-0001-exonagat-exon-13142Ectocarpus subulatus male Bft15bexonScaffold_106 288751..288763 -
EsuBft1154_5a-0001-exonagat-exon-13139Ectocarpus subulatus male Bft15bexonScaffold_106 288922..289129 -
EsuBft1154_5a-0001-exonagat-exon-13138Ectocarpus subulatus male Bft15bexonScaffold_106 289207..289223 -
EsuBft1154_5a-0001-exonagat-exon-13135Ectocarpus subulatus male Bft15bexonScaffold_106 289450..289526 -
EsuBft1154_5a-0001-exonEsuBft1154_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 289733..290068 -
EsuBft1154_5a-0001-exonagat-exon-13137Ectocarpus subulatus male Bft15bexonScaffold_106 290330..290410 -
EsuBft1154_5a-0001-exonagat-exon-13140Ectocarpus subulatus male Bft15bexonScaffold_106 290669..291037 -
EsuBft1154_5a-0001-exonagat-exon-13141Ectocarpus subulatus male Bft15bexonScaffold_106 291418..291504 -
EsuBft1154_5a-0001-exonagat-exon-13136Ectocarpus subulatus male Bft15bexonScaffold_106 291720..291828 -
EsuBft1154_5a-0001-exonagat-exon-13134Ectocarpus subulatus male Bft15bexonScaffold_106 292604..292675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_5a-0001-cdsEsuBft1154_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 288751..288763 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_5a-0001-exonagat-five_prime_utr-950Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_106 291798..291828 -
EsuBft1154_5a-0001-exonagat-five_prime_utr-951Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_106 292604..292675 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1154_5a-0001 ID=EsuBft1154_5a-0001|Name=EsuBft1154_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1369bp|location=Sequence derived from alignment at Scaffold_106:288751..292675- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCAACGAGGGAGCACCTTCGCATGGGTGGGATTCCAACGGCTGCGGGCA
TTCACGCAATGACAGCCTAACGGTGACCGAGGATCAACTGGTGGCGGTGC
GTCATGAGCAGAAGCACCGACAGCAACTGGGTGAAGAAGTGCCGCATGGC
TATGCTCATGTCCGGGATCTATGACCGCAGGACCTCCGAGGAGCGGCGCC
TGAGGCACCTCGTTGGTCTGGCCATCGATCTGAACACCGCCGAGGCAAGC
GTTCTGCAGGGAGAGGAGGCACGCCCCGTGGTTGCTACTATGAAAGGCCT
GGCTGACCAGCTTGCGACGGTCGGGCCGGAACCTTTGTCGGTTATCGACG
ATGCTAATAACCAGATGTTCGACCTGAAGGCTCAGGAGTCAAACCTCCAA
CACGTACTCCTAGGGCGCAATCGTGACCTCGAAGCGCAAGTAGCACAAGA
AAAAGACCAGAACTGGTCTCTGGGGGGAAGGGCAGGTGCTTCTCTGGAAC
TTCAGAAATCCCACCTTCTGCAGCGCATCAAGGTGCACAACAAGTTCATG
GTGGACTTGCTGGGCTTCATGGACAAGAAGAAGGCGGTGGTGAGGCGCGC
CGTACTTCGCTTGGAGGCTGCTCTAGCGACGTGCGATGCACGGGATAAGG
TTATTTCGGCTGCAGACGAGAGAGTGGCCAAGGACATATTAGAGCTAGTA
GATCGCGCGCAGAACAAGCCGCAAGGGTCGGTGATAGTGACTACCTGCCC
CATGCCCTTGGCAATGGAACCGCTGCTCGTCCAGGAACCAGTCGCAGCTC
CGGTGGAACCCCCCGCTAACTCCGTCACCACGGCGCTCAACAAGTGGGTC
GAAGGAAGCTTCTTCAAACGGTTCGTGGCGCGCACCATGGCAAGGAACAA
CGTGGACGCCACCTTCTTGGCTACACGAGCTCTGTCGCCGGTGGATACGT
GGTACGTGCTATCCACTTGCCTGGGACGAGGAACTTTCGGTGGCGTCTTC
AAGATAGACGTCCTCACCCTGGGGGAGAGCTTCGCCATGAAGCTAATCAA
TGAGGGAGAGGGCAAGAATGCTCGAAGGCGAACGCGCAGGTCGCAAGAGT
CCCTGCTCGGGGAGATGGTCATCTGTGTCTGGCACGGCTCGCAACCACTA
TCGGATGATTTGTGTGATTCCTCCCATACCGGCCTGATGTTTTCGTCCTT
GGCTGTCAATGTCCCGCCACACCCGAACGTCCTCCAAGCCGTGGGAGTAG
ATGACAGGGAGCTAGACTGCATGAAGATCGTCTACCACCTTGCAGAGGGG
GATTTCAGCCGCTGCGCGTGGGGAAGCACAGAAGACAGCGCGGGGACGAA
GATGCGGGAACATCCATGA
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protein sequence of EsuBft1154_5a-0001

>EsuBft1154_5 ID=EsuBft1154_5|Name=EsuBft1154_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=421bp
MSRSTDSNWVKKCRMAMLMSGIYDRRTSEERRLRHLVGLAIDLNTAEASV
LQGEEARPVVATMKGLADQLATVGPEPLSVIDDANNQMFDLKAQESNLQH
VLLGRNRDLEAQVAQEKDQNWSLGGRAGASLELQKSHLLQRIKVHNKFMV
DLLGFMDKKKAVVRRAVLRLEAALATCDARDKVISAADERVAKDILELVD
RAQNKPQGSVIVTTCPMPLAMEPLLVQEPVAAPVEPPANSVTTALNKWVE
GSFFKRFVARTMARNNVDATFLATRALSPVDTWYVLSTCLGRGTFGGVFK
IDVLTLGESFAMKLINEGEGKNARRRTRRSQESLLGEMVICVWHGSQPLS
DDLCDSSHTGLMFSSLAVNVPPHPNVLQAVGVDDRELDCMKIVYHLAEGD
FSRCAWGSTEDSAGTKMREHP
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mRNA from alignment at Scaffold_106:288751..292675-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1154_5a-0001 ID=EsuBft1154_5a-0001|Name=EsuBft1154_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3925bp|location=Sequence derived from alignment at Scaffold_106:288751..292675- (Ectocarpus subulatus male Bft15b)
GCCAACGAGGGAGCACCTTCGCATGGGTGGGATTCCAACGGCTGCGGGCA
TTCACGCAATGACAGCCTAACGGTGAGCTTCAGAGCGAAATGGGTGAACT
ATCTATCCTCCTACGTTGGTCTACATGTGAACAATCCTCCACGGACTGAC
CTCCAAAACCCAACCATGCTGAGACTCTCGTAGTCTAGTCTACAGACAGA
CAATCGAAGCGACGAACCTGTTGATGACCACGGCTACGCTTCACCTACCC
ACCCCGCCCCTGCGACAATGTATGACCACCTCAGCCGTGGGTAGATATTT
CACGCGTGTTAGCCCTGGTTGTTTCTGTGGTGTGACTGCTGTTGCCGAGG
GAGGGTTTCCGAGCCTGTGCTGTATAGGCTAGCTGCTGCGGATGTATTGA
CTATGTCAGCTATTTAGCTGTATGGACGTACATGCATGTGGCCTACGTAT
ATGTCATGTACCAAAGAAACACCAGTTGGCCTCCTGCCTGAGAGCAGCAC
ATGACTACGGGTAACCCCCACATGGACCCTCGACATTGAATTGCGTTTGG
TACGGAGTTGCGAGCAGGAATTGCCGTGTTGACGGGCCGAGTGATGCAGC
ATTTCGTGTCACGTTAAATTATCAACATCACGGGTGGGTGACGGCAATTA
AAATCCAACACACCTGCCGTGAGTAGTATTTCTATCTCTCGAAACCGGTC
TCCCTGGCGGGGCGCGCAGGAGAGACACGCCACAGAGATCGGTAAGGTAC
ATTGAGGCCGCCCTCTCGCTGTCCGGTAGTGGTCGGACGTGTATTGTTCT
GACTGCGTAGATAATTGACAACCGTATTTTCGTCCCCTTACCCATAGGTG
ACCGAGGATCAACTGGTGGCGGTGCGTCATGAGCAGAAGCACCGACAGCA
ACTGGGTGAAGAAGTGCCGCATGGCTATGCTCATGTCCGGGATCTATGAC
CGCAGGGTAGGCGTTTGCGGTCTGATCGCCGAGTGTTGGTTGGGGCGGAG
TGAAAGTGACGGGGTGGTCACAGACAAGCAGCTTATGTACCCTCGCTGTC
AATATTGTACACTACCCTCGGTGTGACAAGAGTGCTGTGCGATGAAAGGG
ACAGAGTACTGTTCGCGTGCTCGCTCGACGGCGTCATTTGACGTGTGCCG
TTCATGTGCTTGTTGCGTCAGACCTCCGAGGAGCGGCGCCTGAGGCACCT
CGTTGGTCTGGCCATCGATCTGAACACCGCCGAGGCAAGCGTTCTGCAGG
GAGAGGAGGTGGGTGCTGCACGCGGTTTTTCAGCCTCGAAGACCGAGGAT
ACAATTGAACAACGAGAAACACGCAGCAGCCCCATGTTTTCTCGAATCTG
CTGCCGCTGTCTTCAGCGAAGCGGCCATCGTCCGCATACAGGCATTTCGT
TCGCCCTGTTAGCACCCTTGACCTATCCAACACAACCACTCGCTAGCTCC
AAGTCACGTCTCTACCGTCACGTGGCCGTGCTCAACATGAGTGCGGTCGT
AACGGACTACACCAGACCCTCGCACACCACTGCATCAATACTATCCGTGC
ACCACTTATTGCATGCCTACCGCCCGCCGTGGGGTTGACAATCCCCAACC
ACACCCCGCCACACTGCTCGCCGGGTCCCGTTGACCAGGCACGCCCCGTG
GTTGCTACTATGAAAGGCCTGGCTGACCAGCTTGCGACGGTCGGGCCGGA
ACCTTTGTCGGTTATCGACGATGCTAATAACCAGATGTTCGACCTGAAGG
CTCAGGAGTCAAACCTCCAACACGTACTCCTAGGGCGCAATCGTGACCTC
GAAGCGCAAGTAGCACAAGAAAAAGACCAGAACTGGTCTCTGGGGGGAAG
GGCAGGTGCTTCTCTGGAACTTCAGAAATCCCACCTTCTGCAGCGCATCA
AGGTGCACAACAAGTTCATGGTGGACTTGCTGGGCTTCATGGACAAGAAG
AAGGCGGTGGTGAGGCGCGCCGTACTTCGCTTGGAGGCTGCTCTAGCGAC
GTGCGATGTGAGTGTCTACCAAGGCAGTAGAAAGCAGGATAGCGTTACCA
GTCTCTCGCTTCTCCCAACGGGGCTCTGAAAAAGAGTACGTGCGGCACCA
CATCGGGAGCCATCCTCGTTAGTAGGGAATGGCTCTTCTCGGGCCATCCG
AACACCTATGCCCTACCCCCACTGTAATGAAATTTCCCAAAACAAGCACC
CGGCGACGTCACTCTCCCCTCACATTCAACGGCAGTGAAAAATTCCACTT
TTTGACTGGAAACAGGCACGGGATAAGGTTATTTCGGCTGCAGACGAGAG
AGTGGCCAAGGACATATTAGAGCTAGTAGATCGCGCGCAGAACAAGGTGA
GGGTACTACACTCGGGAAAAGTAGGTTCGGCAGAAAGGTTCCCTGTGTAA
CAATGGTGTTGCTGCCTCACACGCACAGAGATTGCACGAGATTCAACACC
CTGTGTGATTTTCGGCAATAGTGTCAACAAGATGGGGCTTCTTGTAACCT
GTTTTTGCTCATTTGGCGTCTCGCGGTATCCCTCGCGCGTTCGACAGTGT
TCGTCATCGTCGCCGCAAGCAACAACAGACTGCGCATGCGATGTTTCGAA
GCTTCAGCCGCAAGGGTCGGTGATAGTGACTACCTGCCCCATGCCCTTGG
CAATGGAACCGCTGCTCGTCCAGGAACCAGTCGCAGCTCCGGTGGAACCC
CCCGCTAACTCCGTCACCACGGCGCTCAACAAGTGGGTCGAAGGAAGCTT
CTTCAAACGGTTCGTGGCGCGCACCATGGCAAGGAACAACGTGGACGCCA
CCTTCTTGGCTACACGAGCTCTGTCGCCGGTGGATACGTGGTACGTGCTA
TCCACTTGCCTGGGACGAGGAACTTTCGGTGGCGTCTTCAAGATAGACGT
CCTCACCCTGGGGGAGAGCTTCGCCATGAAGCTAATCAATGAGGTAGGTG
TGATACCTCCGTGTTGGTGCACTGGTTGCTCTTGATGGTGATCATGTGTA
GCCATTGCAAAGCGTTCGATGAGCTGTCCCCTCCTTGTAGTTCTGCGTAA
TGTGATAGTTCAAGTGTACCTGGCCCCCTATCGGAGCTTCTTCGAACTGG
GCTTGGTACTGCTGCACCGTCCTGCTTGCTTTTGGCCCTCGTACCTCAGG
GAGAGGGCAAGAATGCTCGAAGGCGAACGCGCAGGTCGCAAGAGTCCCTG
CTCGGGGAGATGGTCATCTGTGTCTGGTGAGACACGCATGTCGCCGTCGT
TTTGTTTTTGCAGAGTAGCGAAGACTTGTCACAGTCAACGAATAGAGTGC
AGCAAGGGCGGGGTGGTTGCAAGCACGTAGAATTTGCGGTAGATGAACAC
CGTTATAGGGGTTTTGGTGTCTTGGGAGCAGGAGTGGTGGTTTTTCCACA
GGCATGTTCCATCCTTCGTTCCGGTTCGTGCACCAAGTACACCGATTTGT
AGGCACGGCTCGCAACCACGTACGTTGCATACCGCTTTCATTGTCGGTTC
CGCGCGTGTTTCGATCAACCCACATTGTTCGCGTCGATGCCCGCAGTATC
GGATGATTTGTGTGATTCCTCCCATACCGGCCTGATGTTTTCGTCCTTGG
CTGTCAATGTCCCGCCACACCCGAACGTCCTCCAAGCCGTGGGAGTAGAT
GACAGGGAGCTAGACTGCATGAAGATCGTCTACCACCTTGCAGAGGGGGA
TTTCAGCCGCTGCGCGTGGGGAAGCACAGAAGACAGCGCGGGGACGAAGA
TGCGGTGAGATGTGAACTCACGTCATCCCTCTCGACCCACCGGTACCACA
TGACTCGGTTGGAAAATATTGCCGTTGACTGACGGCCTACAACTTGTGAT
TTGTTTACCTTGTTGCAGAGATGAGTTGTGGAGTTTGTCTCTGTACTGTG
GCTTTGTCACAGGGAACATCCATGA
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Coding sequence (CDS) from alignment at Scaffold_106:288751..292675-

>EsuBft1154_5a-0001 ID=EsuBft1154_5a-0001|Name=EsuBft1154_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1266bp|location=Sequence derived from alignment at Scaffold_106:288751..292675- (Ectocarpus subulatus male Bft15b)
ATGAGCAGAAGCACCGACAGCAACTGGGTGAAGAAGTGCCGCATGGCTAT
GCTCATGTCCGGGATCTATGACCGCAGGACCTCCGAGGAGCGGCGCCTGA
GGCACCTCGTTGGTCTGGCCATCGATCTGAACACCGCCGAGGCAAGCGTT
CTGCAGGGAGAGGAGGCACGCCCCGTGGTTGCTACTATGAAAGGCCTGGC
TGACCAGCTTGCGACGGTCGGGCCGGAACCTTTGTCGGTTATCGACGATG
CTAATAACCAGATGTTCGACCTGAAGGCTCAGGAGTCAAACCTCCAACAC
GTACTCCTAGGGCGCAATCGTGACCTCGAAGCGCAAGTAGCACAAGAAAA
AGACCAGAACTGGTCTCTGGGGGGAAGGGCAGGTGCTTCTCTGGAACTTC
AGAAATCCCACCTTCTGCAGCGCATCAAGGTGCACAACAAGTTCATGGTG
GACTTGCTGGGCTTCATGGACAAGAAGAAGGCGGTGGTGAGGCGCGCCGT
ACTTCGCTTGGAGGCTGCTCTAGCGACGTGCGATGCACGGGATAAGGTTA
TTTCGGCTGCAGACGAGAGAGTGGCCAAGGACATATTAGAGCTAGTAGAT
CGCGCGCAGAACAAGCCGCAAGGGTCGGTGATAGTGACTACCTGCCCCAT
GCCCTTGGCAATGGAACCGCTGCTCGTCCAGGAACCAGTCGCAGCTCCGG
TGGAACCCCCCGCTAACTCCGTCACCACGGCGCTCAACAAGTGGGTCGAA
GGAAGCTTCTTCAAACGGTTCGTGGCGCGCACCATGGCAAGGAACAACGT
GGACGCCACCTTCTTGGCTACACGAGCTCTGTCGCCGGTGGATACGTGGT
ACGTGCTATCCACTTGCCTGGGACGAGGAACTTTCGGTGGCGTCTTCAAG
ATAGACGTCCTCACCCTGGGGGAGAGCTTCGCCATGAAGCTAATCAATGA
GGGAGAGGGCAAGAATGCTCGAAGGCGAACGCGCAGGTCGCAAGAGTCCC
TGCTCGGGGAGATGGTCATCTGTGTCTGGCACGGCTCGCAACCACTATCG
GATGATTTGTGTGATTCCTCCCATACCGGCCTGATGTTTTCGTCCTTGGC
TGTCAATGTCCCGCCACACCCGAACGTCCTCCAAGCCGTGGGAGTAGATG
ACAGGGAGCTAGACTGCATGAAGATCGTCTACCACCTTGCAGAGGGGGAT
TTCAGCCGCTGCGCGTGGGGAAGCACAGAAGACAGCGCGGGGACGAAGAT
GCGGGAACATCCATGA
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