EsuBft1154_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1154_2a-0001
Unique NameEsuBft1154_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:312258..314126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FGW5
ProteomeIdEsuBft1154_2
Protein domainsG3DSA
Protein domainsIPR017441
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length84
Hectar predicted targeting categoryother localisation
Evalue1.05e-152
EggNOG OGsKOG0613@1|root,KOG0613@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K06491
KEGG Pathwayko04514,ko05020,map04514,map05020
Descriptioncytoskeletal protein binding
COG categoryS
BRITEko00000,ko00001,ko00536,ko00537,ko04090,ko04131,ko04516
Cross References
External references for this mRNA
DatabaseAccession
GO0005524
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_2aEsuBft1154_2aEctocarpus subulatus male Bft15bgeneScaffold_106 312258..314126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_2a-0001EsuBft1154_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 312258..314126 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_2a-0001-exonagat-exon-13121Ectocarpus subulatus male Bft15bexonScaffold_106 312258..312362 +
EsuBft1154_2a-0001-exonagat-exon-13119Ectocarpus subulatus male Bft15bexonScaffold_106 312743..313111 +
EsuBft1154_2a-0001-exonEsuBft1154_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 313370..313450 +
EsuBft1154_2a-0001-exonagat-exon-13122Ectocarpus subulatus male Bft15bexonScaffold_106 313778..314047 +
EsuBft1154_2a-0001-exonagat-exon-13120Ectocarpus subulatus male Bft15bexonScaffold_106 314106..314126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1154_2a-0001-cdsEsuBft1154_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 312258..312362 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1154_2a-0001 ID=EsuBft1154_2a-0001|Name=EsuBft1154_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=846bp|location=Sequence derived from alignment at Scaffold_106:312258..314126+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTTGTTGCGTCAGACCTCCGAGGAGCGGCGCCTGAGGCACCTCGT
TGGTCTGGCCATCGATCTGAACACCGCCGAGGCAAGCGTTCTGCAGGGAG
AGGAGGCACGCCCCGTGGTTGCTACTATGAAAGGCCTGGCTGGCCAGCTT
GCGACGGTCGGGCCGGAACCTTTGTCGGTTATCGACGATGCTAATAACCA
GATGTTCGACCTGAAGGCTCAGGAGTCAAACCTCCAACACGTACTCCTAG
GGCGCAATCGTGACCTCGAAGCGCAAGTAGCACAAGAAAAAGACCAGAAC
TGGTCTCTGGGGGGAAGGGCAGGTGCTTCTCTGGAACTTCAGAAATCCCA
CCTTCTGCAGCGCATCAAGGTGCACAACAAGTTCATGGTGGACTTGCTGG
GCTTCATGGACAAGAAGAAGGCGGTGGTGAGGCGCGCCGTACTTCGCTTG
GAGGCTGCTCTAGCGACGTGCGATGCACGGGATAAGGTTATTTCGGCTGC
AGACGAGAGAGTGGCCAAGGACATATTAGAGCTAGTAGATCGCGCGCAGA
ACAAGGAACCAGTCGCAGCTCCGGTGGAACCCCCCGCTAACTCCGTCACC
ACGGCGCTCAACAAGTGGGTCGAAGGAAGCTTCTTCAAACGGTTCGTGGC
GCGCACCATGGCAAGGAACAACGTGGACGCCACCTTCTTGGCTACACGAG
CTCTGTCGCCGGTGGATACGTGGTACGTGCTATCCACTTGCCTGGGACGA
GGAACTTTCGGTGGCGTCTTCAAGATAGACGTCCTCACCCTGGGGGAGAG
CTTCGCCATGAAGCTAATCAATGAGCCATTGCAAAGCGTTCGATGA
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protein sequence of EsuBft1154_2a-0001

>EsuBft1154_2 ID=EsuBft1154_2|Name=EsuBft1154_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=281bp
MCLLRQTSEERRLRHLVGLAIDLNTAEASVLQGEEARPVVATMKGLAGQL
ATVGPEPLSVIDDANNQMFDLKAQESNLQHVLLGRNRDLEAQVAQEKDQN
WSLGGRAGASLELQKSHLLQRIKVHNKFMVDLLGFMDKKKAVVRRAVLRL
EAALATCDARDKVISAADERVAKDILELVDRAQNKEPVAAPVEPPANSVT
TALNKWVEGSFFKRFVARTMARNNVDATFLATRALSPVDTWYVLSTCLGR
GTFGGVFKIDVLTLGESFAMKLINEPLQSVR
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mRNA from alignment at Scaffold_106:312258..314126+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1154_2a-0001 ID=EsuBft1154_2a-0001|Name=EsuBft1154_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1869bp|location=Sequence derived from alignment at Scaffold_106:312258..314126+ (Ectocarpus subulatus male Bft15b)
ATGTGCTTGTTGCGTCAGACCTCCGAGGAGCGGCGCCTGAGGCACCTCGT
TGGTCTGGCCATCGATCTGAACACCGCCGAGGCAAGCGTTCTGCAGGGAG
AGGAGGTGGGTGCTGCACGCGGTTTTTCAGCCTCGAAGACCGAGGATACA
ATTGAACAACGAGAAACACGCAGCAGCCCCATGTTTTCTCGAATCTGCTG
CCGCTGTCTTCAGCGAAGCGGCCATCGTCCGCATACAGGCATTTCGTTCG
CCCTGTTAGCACCCTTGACCTATCCAACACAACCACTCGCTAGCTCCAAG
TCACGTCTCTACCGTCACGTGGCCGTGCTCAACATGAGTGCGGTCGTAAC
GGACTACACCAGACCCTCGCACACCACTGCATCAATACTATCCGTGCACC
ACTTATTGCATGCCTACCGCCCGCCGTGGGGTTGACAATCCCCAACCACA
CCCCGCCACACTGCTCGCCGGGTCCCGTTGACCAGGCACGCCCCGTGGTT
GCTACTATGAAAGGCCTGGCTGGCCAGCTTGCGACGGTCGGGCCGGAACC
TTTGTCGGTTATCGACGATGCTAATAACCAGATGTTCGACCTGAAGGCTC
AGGAGTCAAACCTCCAACACGTACTCCTAGGGCGCAATCGTGACCTCGAA
GCGCAAGTAGCACAAGAAAAAGACCAGAACTGGTCTCTGGGGGGAAGGGC
AGGTGCTTCTCTGGAACTTCAGAAATCCCACCTTCTGCAGCGCATCAAGG
TGCACAACAAGTTCATGGTGGACTTGCTGGGCTTCATGGACAAGAAGAAG
GCGGTGGTGAGGCGCGCCGTACTTCGCTTGGAGGCTGCTCTAGCGACGTG
CGATGTGAGTGTCTACCAAGGCAGTAGAAAGCAGGATAGCGTTACCAGTC
TCTCGCTTCTCCCAAGGGGGCTCTGAAAAAGAGTACGTGCGGCACCACAT
CGGGAGCCATCCTCGTTAGTAGGGAATGGCTCTTCTCGGGCCATCCGAAC
ACCTATGCCCTACCCCCACTGTAATGAAATTTCCCAAAACAAGCACCCGG
CGACGTCACTCTCCCCTCACATTCAACGGCAGTGAAAAATTCCACTTTTT
GACTGGAAACAGGCACGGGATAAGGTTATTTCGGCTGCAGACGAGAGAGT
GGCCAAGGACATATTAGAGCTAGTAGATCGCGCGCAGAACAAGGTGAGGG
TACTACACTCGGGAAAAGTAGGTTCGGCAGAAAGGTTCCCTGTGTAACAA
TGGTGTTGCTGCCTCACACGCACAGAGATTGCACGAGATTCAACACCCTG
TGTGATTTTCGGCAATAGTGTCAACAAGATGGGGCTTCTTGTAACCTGTT
TTTGCTCATTTGGCGTCTCGCGGTATCCCTCGCGCGTTCGACAGTGTTCG
TCATCGTCGCCGCAAGCAACAACAGACTGCGCATGCGATGTTTCGAAGCT
TCAGCCGCAAGGGTCGGTGATAATGACTACCTGCCCCATGCCCTTGGCAA
TGGAACCGCTGCTCGTCCAGGAACCAGTCGCAGCTCCGGTGGAACCCCCC
GCTAACTCCGTCACCACGGCGCTCAACAAGTGGGTCGAAGGAAGCTTCTT
CAAACGGTTCGTGGCGCGCACCATGGCAAGGAACAACGTGGACGCCACCT
TCTTGGCTACACGAGCTCTGTCGCCGGTGGATACGTGGTACGTGCTATCC
ACTTGCCTGGGACGAGGAACTTTCGGTGGCGTCTTCAAGATAGACGTCCT
CACCCTGGGGGAGAGCTTCGCCATGAAGCTAATCAATGAGGTAGGTGTGA
TACCTCCGTGTTGGTGCACTGGTTGCTCTTGATGGTGATCATGTGTAGCC
ATTGCAAAGCGTTCGATGA
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Coding sequence (CDS) from alignment at Scaffold_106:312258..314126+

>EsuBft1154_2a-0001 ID=EsuBft1154_2a-0001|Name=EsuBft1154_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=846bp|location=Sequence derived from alignment at Scaffold_106:312258..314126+ (Ectocarpus subulatus male Bft15b)
ATGTGCTTGTTGCGTCAGACCTCCGAGGAGCGGCGCCTGAGGCACCTCGT
TGGTCTGGCCATCGATCTGAACACCGCCGAGGCAAGCGTTCTGCAGGGAG
AGGAGGCACGCCCCGTGGTTGCTACTATGAAAGGCCTGGCTGGCCAGCTT
GCGACGGTCGGGCCGGAACCTTTGTCGGTTATCGACGATGCTAATAACCA
GATGTTCGACCTGAAGGCTCAGGAGTCAAACCTCCAACACGTACTCCTAG
GGCGCAATCGTGACCTCGAAGCGCAAGTAGCACAAGAAAAAGACCAGAAC
TGGTCTCTGGGGGGAAGGGCAGGTGCTTCTCTGGAACTTCAGAAATCCCA
CCTTCTGCAGCGCATCAAGGTGCACAACAAGTTCATGGTGGACTTGCTGG
GCTTCATGGACAAGAAGAAGGCGGTGGTGAGGCGCGCCGTACTTCGCTTG
GAGGCTGCTCTAGCGACGTGCGATGCACGGGATAAGGTTATTTCGGCTGC
AGACGAGAGAGTGGCCAAGGACATATTAGAGCTAGTAGATCGCGCGCAGA
ACAAGGAACCAGTCGCAGCTCCGGTGGAACCCCCCGCTAACTCCGTCACC
ACGGCGCTCAACAAGTGGGTCGAAGGAAGCTTCTTCAAACGGTTCGTGGC
GCGCACCATGGCAAGGAACAACGTGGACGCCACCTTCTTGGCTACACGAG
CTCTGTCGCCGGTGGATACGTGGTACGTGCTATCCACTTGCCTGGGACGA
GGAACTTTCGGTGGCGTCTTCAAGATAGACGTCCTCACCCTGGGGGAGAG
CTTCGCCATGAAGCTAATCAATGAGCCATTGCAAAGCGTTCGATGA
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