EsuBft1152_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1152_5a-0001
Unique Name	EsuBft1152_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_463	contig	Scaffold_463:492929..495149 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1152_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	212
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1152_5a	EsuBft1152_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_463 492929..495149 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1152_5a-0001-exon	EsuBft1152_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 492929..492932 +
EsuBft1152_5a-0001-exon	agat-exon-102929	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 493034..495149 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1152_5a-0001-cds	EsuBft1152_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_463 492929..492932 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1152_5a-0001-exon	agat-three_prime_utr-1462	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_463 493885..495149 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1152_5a-0001	EsuBft1152_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_463 492929..493884 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_463:492929..495149+
coding sequence from alignment at Scaffold_463:492929..495149+

spliced messenger RNA

>EsuBft1152_5a-0001 ID=EsuBft1152_5a-0001|Name=EsuBft1152_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2120bp|location=Sequence derived from alignment at Scaffold_463:492929..495149+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGGTAAGGAAGTGGGAACAGGGGGTGGCAGTGTCGGGGGTCTGGG
GGAACATGGGCTTGAGTGGGGGTTGCCTCAGAAAGAGCAAGACGGCGGAT
GTTTCTCTCTTGGTGTGACCGGTGGAAATATCGATCAGCAATGCCGCAGA
GACGTTTGCGCGCCGAAATATGCGTGCGACAGCTTTAACCTAACCACTTC
GGTGGAAAGCGGATTTCTGTTCGACACGGTGTCGGGAGTGCTGAGGGGGG
AGAGCTTGGCCCTTGTGGTTGCAGGTGGCAAGGAAGTAGGAACAGGGGGT
GGCAGTGTCGGGGGTCTGGGGGAACATGGGCTTGAATGGGGGTTGCCTCA
GAAAGAGCAAGACGGCGGATGTTTCTCTCTTGGTGTGACCGGTGGAAATA
TCGATCAGCAATGCCGCAGAGACGTTTGCGCGCCGAAATATGCGTGCGAC
AGCTTTAACCTAACCACTTCGGTGGAAAGCGGATTTCTGTTCGACACGGT
GTCGGGAGTGCTGAGGGGGGAGGGCTTGGCCCTTGTGGTTGCAGGTGGCA
AGGAAGTAGGAACAGGGGGTGGCAGTGTCGGGGGTCTGGGGGAACATGGG
CTTGAATGGGGGTTGCCTCAGAAAGAGCAAGACGGCGGATGTTTCACTCT
TGGTGTGACAAGTGGCAATATCGATCAGCAATGCCGCACAGACTTTTGCG
CGCCGAAATATGCGTGCGACAGCTTTAACCTAACCACTTCGGTGGAAAGC
GGATTTCTGTTCGATACGGTGTCAGGGGTACCAGGGAAGACGGGGCCGAC
TTTGTTACATTTCGGGTGGATGAGGTTGGGGTTTTGTTCGTTTTTCTCCA
TCTAAGGTTCGTGCCTAGCGTTCAGCTGTAGTGTTTCGACCAAAGTTTTG
TTGACTTCGAGGCAAACATTCCTAGCTATTGGGCATCGAGTTAATTTGGC
TTGGCATGACGGCCTTTACGATCGACGTTTTATGTATGTCTGCATTTATC
TGCAATTAATTGTCGGAGGGCAAACAAAATAATAATAATATGCTTGCAGA
TGCTAACCTAGGACGCCTTTGTGCGCCTGATGGATCTGAAATTTCACTGC
CGTCGTGCCGGGGCAACGGGGATAGTCGGCGCTCCATCGAGACCGAGACC
AAGACCGAGACCGACACCGTCTTCCTTGGCCGCGAGGATGACGGGGGGTC
GGTCGTGGCAGCGGCAGCGGCGGTGCTGGTTAGATCATCAGGGCGGGAAG
GCAGGGGGCACTGTCGAACGAGAAGGCGATGGAGGTCTGGCTGCTCGAGA
AGCCCCTGTTCTCGGCCGGCAACTTCAACGGGAGTGTTTGTACGCCTTTT
TTGTATTGGCAGGCATGATATTTTTAACGGTTGTTCAGTTGGCGGGCCTT
CAAATTGGTGGTGTTTTTCGTATCGCAATCTATTATATTACTTCCTCTGT
TGTATCATAAGCCTGGTCTGTTAGGTTTACACGCCGCCTTAACGGTGTCC
GATCTGTTTTTCGTTTTTTTCGTTGGATTCTACGGTGTTTTTTTTTAAAG
CTGATGCTTGAACCATGCGACTAAATGGCCGGAAAACTTTGAGTCGGCCC
AAAAACGGCCATACTTTGCCCTTTTCCGGGGGGTGGGGTACCTGGGGCAT
TGAGCCTAACCCCCTCCCCAAAGCTAACCCCGCCCAGACTCAGCCAACCA
CAATACGTCCCCCATACTAAAACCATATTGATAGTGAACCACAAACTAAA
TTCAACACATTTTTGGGTCCACACTAAAACCAAGACACTTGGGGATCCCG
CACTAAAACCAAGACACTTGCGGGGCAAAAAAACAACAGAGTAGGGCCCG
AATCCCCCCCCCTCTACTCAGCGACCCACATCGCGCCCCCCTATACTCAA
AGCAGTATAATAGTGGCCCCACACAAAAACTAAGACACTTGGGGGTTCCA
CCCTAAAACCAAGACACTTGCGGGCAGAAAAAGTGTCTGTTGGTGTCGGT
GGGCCCAGCGCACCCTTGGGTGTATCCATACTTGGCCCGGCGGAATAGCC
AGCGCAGCCTCCGCTACAATTGCAATGCGGCGGCCCACTGAAAGCTCGCC
GCCCTTGGGGCGATGTGGGG

protein sequence of EsuBft1152_5a-0001

>EsuBft1152_5 ID=EsuBft1152_5|Name=EsuBft1152_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=284bp
MGGKEVGTGGGSVGGLGEHGLEWGLPQKEQDGGCFSLGVTGGNIDQQCRR
DVCAPKYACDSFNLTTSVESGFLFDTVSGVLRGESLALVVAGGKEVGTGG
GSVGGLGEHGLEWGLPQKEQDGGCFSLGVTGGNIDQQCRRDVCAPKYACD
SFNLTTSVESGFLFDTVSGVLRGEGLALVVAGGKEVGTGGGSVGGLGEHG
LEWGLPQKEQDGGCFTLGVTSGNIDQQCRTDFCAPKYACDSFNLTTSVES
GFLFDTVSGVPGKTGPTLLHFGWMRLGFCSFFSI

mRNA from alignment at Scaffold_463:492929..495149+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1152_5a-0001 ID=EsuBft1152_5a-0001|Name=EsuBft1152_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2221bp|location=Sequence derived from alignment at Scaffold_463:492929..495149+ (Ectocarpus subulatus male Bft15b)
ATGGGTGCGACAGCTTTAACCTAACCACTTCGGTGGAAAGCGGATTTCTG
TTCGATACGGTGTCGGGAGTGCTGAGGGGGGAGGGCTTGGCCCTTGTGGT
TGCAGGTGGTAAGGAAGTGGGAACAGGGGGTGGCAGTGTCGGGGGTCTGG
GGGAACATGGGCTTGAGTGGGGGTTGCCTCAGAAAGAGCAAGACGGCGGA
TGTTTCTCTCTTGGTGTGACCGGTGGAAATATCGATCAGCAATGCCGCAG
AGACGTTTGCGCGCCGAAATATGCGTGCGACAGCTTTAACCTAACCACTT
CGGTGGAAAGCGGATTTCTGTTCGACACGGTGTCGGGAGTGCTGAGGGGG
GAGAGCTTGGCCCTTGTGGTTGCAGGTGGCAAGGAAGTAGGAACAGGGGG
TGGCAGTGTCGGGGGTCTGGGGGAACATGGGCTTGAATGGGGGTTGCCTC
AGAAAGAGCAAGACGGCGGATGTTTCTCTCTTGGTGTGACCGGTGGAAAT
ATCGATCAGCAATGCCGCAGAGACGTTTGCGCGCCGAAATATGCGTGCGA
CAGCTTTAACCTAACCACTTCGGTGGAAAGCGGATTTCTGTTCGACACGG
TGTCGGGAGTGCTGAGGGGGGAGGGCTTGGCCCTTGTGGTTGCAGGTGGC
AAGGAAGTAGGAACAGGGGGTGGCAGTGTCGGGGGTCTGGGGGAACATGG
GCTTGAATGGGGGTTGCCTCAGAAAGAGCAAGACGGCGGATGTTTCACTC
TTGGTGTGACAAGTGGCAATATCGATCAGCAATGCCGCACAGACTTTTGC
GCGCCGAAATATGCGTGCGACAGCTTTAACCTAACCACTTCGGTGGAAAG
CGGATTTCTGTTCGATACGGTGTCAGGGGTACCAGGGAAGACGGGGCCGA
CTTTGTTACATTTCGGGTGGATGAGGTTGGGGTTTTGTTCGTTTTTCTCC
ATCTAAGGTTCGTGCCTAGCGTTCAGCTGTAGTGTTTCGACCAAAGTTTT
GTTGACTTCGAGGCAAACATTCCTAGCTATTGGGCATCGAGTTAATTTGG
CTTGGCATGACGGCCTTTACGATCGACGTTTTATGTATGTCTGCATTTAT
CTGCAATTAATTGTCGGAGGGCAAACAAAATAATAATAATATGCTTGCAG
ATGCTAACCTAGGACGCCTTTGTGCGCCTGATGGATCTGAAATTTCACTG
CCGTCGTGCCGGGGCAACGGGGATAGTCGGCGCTCCATCGAGACCGAGAC
CAAGACCGAGACCGACACCGTCTTCCTTGGCCGCGAGGATGACGGGGGGT
CGGTCGTGGCAGCGGCAGCGGCGGTGCTGGTTAGATCATCAGGGCGGGAA
GGCAGGGGGCACTGTCGAACGAGAAGGCGATGGAGGTCTGGCTGCTCGAG
AAGCCCCTGTTCTCGGCCGGCAACTTCAACGGGAGTGTTTGTACGCCTTT
TTTGTATTGGCAGGCATGATATTTTTAACGGTTGTTCAGTTGGCGGGCCT
TCAAATTGGTGGTGTTTTTCGTATCGCAATCTATTATATTACTTCCTCTG
TTGTATCATAAGCCTGGTCTGTTAGGTTTACACGCCGCCTTAACGGTGTC
CGATCTGTTTTTCGTTTTTTTCGTTGGATTCTACGGTGTTTTTTTTTAAA
GCTGATGCTTGAACCATGCGACTAAATGGCCGGAAAACTTTGAGTCGGCC
CAAAAACGGCCATACTTTGCCCTTTTCCGGGGGGTGGGGTACCTGGGGCA
TTGAGCCTAACCCCCTCCCCAAAGCTAACCCCGCCCAGACTCAGCCAACC
ACAATACGTCCCCCATACTAAAACCATATTGATAGTGAACCACAAACTAA
ATTCAACACATTTTTGGGTCCACACTAAAACCAAGACACTTGGGGATCCC
GCACTAAAACCAAGACACTTGCGGGGCAAAAAAACAACAGAGTAGGGCCC
GAATCCCCCCCCCTCTACTCAGCGACCCACATCGCGCCCCCCTATACTCA
AAGCAGTATAATAGTGGCCCCACACAAAAACTAAGACACTTGGGGGTTCC
ACCCTAAAACCAAGACACTTGCGGGCAGAAAAAGTGTCTGTTGGTGTCGG
TGGGCCCAGCGCACCCTTGGGTGTATCCATACTTGGCCCGGCGGAATAGC
CAGCGCAGCCTCCGCTACAATTGCAATGCGGCGGCCCACTGAAAGCTCGC
CGCCCTTGGGGCGATGTGGGG

Coding sequence (CDS) from alignment at Scaffold_463:492929..495149+

>EsuBft1152_5a-0001 ID=EsuBft1152_5a-0001|Name=EsuBft1152_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=855bp|location=Sequence derived from alignment at Scaffold_463:492929..495149+ (Ectocarpus subulatus male Bft15b)
ATGGGTGGTAAGGAAGTGGGAACAGGGGGTGGCAGTGTCGGGGGTCTGGG
GGAACATGGGCTTGAGTGGGGGTTGCCTCAGAAAGAGCAAGACGGCGGAT
GTTTCTCTCTTGGTGTGACCGGTGGAAATATCGATCAGCAATGCCGCAGA
GACGTTTGCGCGCCGAAATATGCGTGCGACAGCTTTAACCTAACCACTTC
GGTGGAAAGCGGATTTCTGTTCGACACGGTGTCGGGAGTGCTGAGGGGGG
AGAGCTTGGCCCTTGTGGTTGCAGGTGGCAAGGAAGTAGGAACAGGGGGT
GGCAGTGTCGGGGGTCTGGGGGAACATGGGCTTGAATGGGGGTTGCCTCA
GAAAGAGCAAGACGGCGGATGTTTCTCTCTTGGTGTGACCGGTGGAAATA
TCGATCAGCAATGCCGCAGAGACGTTTGCGCGCCGAAATATGCGTGCGAC
AGCTTTAACCTAACCACTTCGGTGGAAAGCGGATTTCTGTTCGACACGGT
GTCGGGAGTGCTGAGGGGGGAGGGCTTGGCCCTTGTGGTTGCAGGTGGCA
AGGAAGTAGGAACAGGGGGTGGCAGTGTCGGGGGTCTGGGGGAACATGGG
CTTGAATGGGGGTTGCCTCAGAAAGAGCAAGACGGCGGATGTTTCACTCT
TGGTGTGACAAGTGGCAATATCGATCAGCAATGCCGCACAGACTTTTGCG
CGCCGAAATATGCGTGCGACAGCTTTAACCTAACCACTTCGGTGGAAAGC
GGATTTCTGTTCGATACGGTGTCAGGGGTACCAGGGAAGACGGGGCCGAC
TTTGTTACATTTCGGGTGGATGAGGTTGGGGTTTTGTTCGTTTTTCTCCA
TCTAA