EsuBft1152_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1152_4a-0001
Unique NameEsuBft1152_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:500181..502330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1152_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length141
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1152_4aEsuBft1152_4aEctocarpus subulatus male Bft15bgeneScaffold_463 500181..502330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1152_4a-0001EsuBft1152_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 500181..501011 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1152_4a-0001-exonagat-exon-102928Ectocarpus subulatus male Bft15bexonScaffold_463 500181..500210 +
EsuBft1152_4a-0001-exonEsuBft1152_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 500877..501923 +
EsuBft1152_4a-0001-exonagat-exon-102927Ectocarpus subulatus male Bft15bexonScaffold_463 501991..502330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1152_4a-0001-cdsEsuBft1152_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 500181..500210 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1152_4a-0001-exonagat-three_prime_utr-1460Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 501012..501923 +
EsuBft1152_4a-0001-exonagat-three_prime_utr-1461Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 501991..502330 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1152_4a-0001 ID=EsuBft1152_4a-0001|Name=EsuBft1152_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1417bp|location=Sequence derived from alignment at Scaffold_463:500181..502330+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGACGGCCTCATCCACTTTGCGCAAGGAAAAGCTCGTTGAGGGCGC
TTCCCTCCCTCTCCAATCAACTAACGCCTGTTTTGTCGCACATGAACACT
TCCCTCTCATCAGACGCCTTGGCGTGAGCGGAATGGGCCCCTGCGAGTCC
TGTGGACGACGATAACCTCGCCGTTCGGAAAGGTCCGATTCCCTGAGGGC
TATCGTCGACGATATCCTCACCAGATACGGCGGAAATTGCAGTTGTTTGG
TACAGTGGTGTGCTGCTTTCATGATACCGAAAGGTCGATAATAGTGGCGA
ATTCGATATCACGCTATGAAGCGAAGAAGGGTCGCAGACGCTGTAGGTAC
GTCCACGATCGTTTTCTGTAGTACGAGTGCTTGCTAATGGCGTGATATTT
GATGTTGAATACAAGGCCCCCCTTCTGGGCGTCGGTGTCAAGCCTCCCGC
GGGTGACGCAGGACCACACGGTCGAAATGTATGCATGGGGGCCGTTTTTC
CTTTCTGTCGTTTAGATGGGTTTCAGTATTGGTTCGGCAGGCTTTGCCGT
CGCGGAACGCGTCCACGGGGTATTGGGCGACAAGAAGGACGATGACGCTC
CCTTTCCTTCCCCGCCCACCCCTCCCGTCTTGCTACCACAGCAGCAGAGG
GCGACGAAAGCGACGAGGATGCTCCCGTGTTGTTGGCCCCCCAAATCAAG
AAGGGGAGGTGGTGGTGGAAGACCGTTCTCCGGAACACTCTTCTTTGTCC
CCAGAGAAGGCAGCATAAGGACCTACTGTTCCGAGCGCAGCTTTCGTCCT
CAGCACGGTTGGATTCACTCGTCACAGAGAGGCCTGGAGCTCTGGAAGGC
ATCCAACGGGTCATCGAAGCGCAAGTCGCTTGAAGCGTTTTTCCCGACAA
TGAGCTCAGCGACATGTAGAGTCACCGGAAGCCCGGCACGTTGGTTGCAA
TGGCAAAGGCTCAAGGCGAGGTTGTGGTAAGCCCTGTGCACCATACCATT
GTACGAGTCTCGCGGTATGCAGTAGAACCGATGAGGAGGGCGCTGCGATG
ACAAATTGATGTCGAATATGGAATGTGGTGTTCTCCACATTACCCCCCCC
CTTTATGAGGCTTCTTCTTGTTTGCTAGGCAAGAGAAGTCTTCTTGGGGT
AACCGAAACCCGACCGGCTGGCGGCGAGTAGAACCACCTTTTTCCAACAA
TCTTCTGTGCGTGTTGCGGGTGCGCCACTTCCGCCACGCATTGCCAGAAG
TTTCGAGTGCGGTAGACGGTGCATCGTTTCTTGGCCCACCCACCGTTTTA
CTTTTTCTGTACTCCGGAAGAAAATTGGGTGAGCAGCGGGTTTTGAAACC
GTGTCTTTTGCAACCAAAAACAGACACCTGACATCTATCGTCTACACCAT
TGTGGAAAAGAGGGTTT
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protein sequence of EsuBft1152_4a-0001

>EsuBft1152_4 ID=EsuBft1152_4|Name=EsuBft1152_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MWTASSTLRKEKLVEGASLPLQSTNACFVAHEHFPLIRRLGVSGMGPCES
CGRR
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mRNA from alignment at Scaffold_463:500181..502330+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1152_4a-0001 ID=EsuBft1152_4a-0001|Name=EsuBft1152_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2150bp|location=Sequence derived from alignment at Scaffold_463:500181..502330+ (Ectocarpus subulatus male Bft15b)
ATGTGGACGGCCTCATCCACTTTGCGCAAGGTTAGCCTTGTTGTGACCGA
TACCGTCTGCTTTACTAGTGCATGAAGGGTGCATGGATGCCTAAACGCAC
TTCTGCCACTATCCCCCCCTCCCCCAATTCCCACCATCTGATATAACCCG
CTCCTCGTCTTTTGCACTTTGTTTTGTGCCGAACAAGGTGTGGAACACGG
GGTGCAACCTGAGCATCGCCTTCCTGGTGTCATTCATCTACTTCTACAAG
TGCCTCAGGGGGGCCCTGCGAAACCCCACGTGGGTGCCGATACACTGCGC
ACTCACCTTCCCGCTGCTGCTGCTGCTGCTGCTGCGGCTGCTGTTCTATG
TGCTGCTGTTCTTCCTGAAGAGAGCGAGAGAGCGCAGCAACCCGTCACCG
CTCCCTTTCTACAACCCCTCCCTCACTCTTCCTCCCCTCACTTGTGCGAC
ACGCGTTCAAGAGCGTGCCAATAAAATACATACGGCAGTGTTTGTTGTGT
GTGCCACGAAGAGGCATGTCAACGATCCATTCACTTCTGGAGGCTCCTCT
CTGCCCCGCACAAGTCTTGCGCAGAACGTCGCGTGAGAAAGGCCCGAACG
ATAGCGGCATCCCTCTCAGGGGCAGAAAGGACACTTGGGGTCGACCCTGA
AAGTGATGCGTGGTGGTTGGTACGTAGTCAATTGGACATTGGACAGGAAA
AGCTCGTTGAGGGCGCTTCCCTCCCTCTCCAATCAACTAACGCCTGTTTT
GTCGCACATGAACACTTCCCTCTCATCAGACGCCTTGGCGTGAGCGGAAT
GGGCCCCTGCGAGTCCTGTGGACGACGATAACCTCGCCGTTCGGAAAGGT
CCGATTCCCTGAGGGCTATCGTCGACGATATCCTCACCAGATACGGCGGA
AATTGCAGTTGTTTGGTACAGTGGTGTGCTGCTTTCATGATACCGAAAGG
TCGATAATAGTGGCGAATTCGATATCACGCTATGAAGCGAAGAAGGGTCG
CAGACGCTGTAGGTACGTCCACGATCGTTTTCTGTAGTACGAGTGCTTGC
TAATGGCGTGATATTTGATGTTGAATACAAGGCCCCCCTTCTGGGCGTCG
GTGTCAAGCCTCCCGCGGGTGACGCAGGACCACACGGTCGAAATGTATGC
ATGGGGGCCGTTTTTCCTTTCTGTCGTTTAGATGGGTTTCAGTATTGGTT
CGGCAGGCTTTGCCGTCGCGGAACGCGTCCACGGGGTATTGGGCGACAAG
AAGGACGATGACGCTCCCTTTCCTTCCCCGCCCACCCCTCCCGTCTTGCT
ACCACAGCAGCAGAGGGCGACGAAAGCGACGAGGATGCTCCCGTGTTGTT
GGCCCCCCAAATCAAGAAGGGGAGGTGGTGGTGGAAGACCGTTCTCCGGA
ACACTCTTCTTTGTCCCCAGAGAAGGCAGCATAAGGACCTACTGTTCCGA
GCGCAGCTTTCGTCCTCAGCACGGTTGGATTCACTCGTCACAGAGAGGCC
TGGAGCTCTGGAAGGCATCCAACGGGTCATCGAAGCGCAAGTCGCTTGAA
GCGTTTTTCCCGACAATGAGCTCAGCGACATGTAGAGTCACCGGAAGCCC
GGCACGTTGGTTGCAATGGCAAAGGCTCAAGGCGAGGTTGTGGTAAGCCC
TGTGCACCATACCATTGTACGAGTCTCGCGGTATGCAGTAGAACCGATGA
GGAGGGCGCTGCGATGACAAATTGATGTCGAATATGGAATGTGGTGAGTT
GTGGAAAAGAGGGTTTCGTCCTCGACAGACGTTCGTTGGGGAGTTTCAAT
CAACCTTTAGGTGTTCTCCACATTACCCCCCCCCTTTATGAGGCTTCTTC
TTGTTTGCTAGGCAAGAGAAGTCTTCTTGGGGTAACCGAAACCCGACCGG
CTGGCGGCGAGTAGAACCACCTTTTTCCAACAATCTTCTGTGCGTGTTGC
GGGTGCGCCACTTCCGCCACGCATTGCCAGAAGTTTCGAGTGCGGTAGAC
GGTGCATCGTTTCTTGGCCCACCCACCGTTTTACTTTTTCTGTACTCCGG
AAGAAAATTGGGTGAGCAGCGGGTTTTGAAACCGTGTCTTTTGCAACCAA
AAACAGACACCTGACATCTATCGTCTACACCATTGTGGAAAAGAGGGTTT
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Coding sequence (CDS) from alignment at Scaffold_463:500181..502330+

>EsuBft1152_4a-0001 ID=EsuBft1152_4a-0001|Name=EsuBft1152_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_463:500181..502330+ (Ectocarpus subulatus male Bft15b)
ATGTGGACGGCCTCATCCACTTTGCGCAAGGAAAAGCTCGTTGAGGGCGC
TTCCCTCCCTCTCCAATCAACTAACGCCTGTTTTGTCGCACATGAACACT
TCCCTCTCATCAGACGCCTTGGCGTGAGCGGAATGGGCCCCTGCGAGTCC
TGTGGACGACGATAA
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