EsuBft1152_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1152_2a-0001
Unique NameEsuBft1152_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:506576..508540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHD8
ProteomeIdEsuBft1152_2
Protein domainsG3DSA
Protein domainsIPR000649
Protein domainsSSF100950
Ownerapollo_admin@sb-roscoff.fr
Notetranslation initiation factor eif-2b subunit beta os:dictyostelium discoideum gn:eif2b2 pe:3 sv [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length1387
Hectar predicted targeting categoryother localisation
Evalue1.29e-14
EggNOG OGsCOG1184@1|root,KOG1465@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameEIF2B2
KEGG koko:K03372,ko:K03754,ko:K19041
KEGG TC2.A.1.25
KEGG Pathwayko00604,ko01100,ko03013,map00604,map01100,map03013
GOsGO:0000003,GO:0000166,GO:0001541,GO:0001558,GO:0001666,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0008361,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009987,GO:0010001,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0014003,GO:0016043,GO:0017076,GO:0019001,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0022603,GO:0022604,GO:0023052,GO:0030154,GO:0030234,GO:0030307,GO:0030424,GO:0030516,GO:0030554,GO:0030900,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0032045,GO:0032268,GO:0032501,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032991,GO:0033554,GO:0034248,GO:0034284,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036293,GO:0036294,GO:0040008,GO:0042063,GO:0042221,GO:0042552,GO:0042995,GO:0043005,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045927,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048638,GO:0048639,GO:0048699,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051239,GO:0051240,GO:0051246,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060322,GO:0061387,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0097159,GO:0097367,GO:0097458,GO:0098772,GO:0120025,GO:0120035,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000026,GO:2000112
EC2.3.2.27
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko01000,ko02000,ko03012,ko04121
Cross References
External references for this mRNA
DatabaseAccession
GO0044237
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1152_2aEsuBft1152_2aEctocarpus subulatus male Bft15bgeneScaffold_463 506576..508540 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1152_2a-0001-exonagat-exon-102926Ectocarpus subulatus male Bft15bexonScaffold_463 506576..506842 -
EsuBft1152_2a-0001-exonEsuBft1152_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 507421..508540 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1152_2a-0001-exonagat-three_prime_utr-1458Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 506576..506826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1152_2a-0001-cdsEsuBft1152_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 506827..506842 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1152_2a-0001-exonagat-five_prime_utr-937Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_463 507705..508540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1152_2a-0001EsuBft1152_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 506827..507704 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1152_2a-0001 ID=EsuBft1152_2a-0001|Name=EsuBft1152_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1387bp|location=Sequence derived from alignment at Scaffold_463:506576..508540- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCCGTGTTTGTTTACGGTAAAGATGCGGGTCTTGGCACGGATCGGCTACA
TCACACAGGCCGGGGTGATGGCACAGGGGGTGCGGAAAACAATCGGATTC
CAAGGGATTTAATTGATTATCGCACAGGTATTGTTCACTTCGCACAGGGA
TGTGCTGAGACCCCGGTACCTTCGGCGAGGTTGGGTGATACCGTGTTATC
CAGCTTTTGTCACGAATCGCTGCTGTACCAAGTTGCGTAGCTTGTATCAG
GGGCTCCACTGCTGTACTTTGGCATCGTAACGTTGCTCATGTGCAGCTGG
TGTTATTCAACATTGTCACTTTCGTCGGAATCGGCACACGGATTCTACTC
AATCAACCAACGCGTACAAACCACACGAGACCAAACGACCACAACCAACT
ACGGTACTGCGAAAAATACAGACTCCACGCTTGCTACCTCTGGTATCGTA
GCAAACGTGTTGCTTGTGTGTGGTGCGTGCGTGAGCACAGACCTCTGCAT
TGGGGGATTTCAATTTAGACTAATTCCCCCCTCGCCGCCTCGGGTTTTGT
TTCGCCGCATATGTGTGGTGTGATTGGGGTGCTGATATGCTGGTGTGCTT
ATGTGTTGTGTCTGTGTTCGTGATGTTGTGGTCCTGATGCTGCAATACCT
GCACAAGAACACGAAGTGCTGGTGTATGTCTGCTGTGATTTGTTCAGGAT
TGCACACATCGGAGTCTTGGCACGGGGGTGCCCGTTCAAAACACCCCATT
CGCCGCTTTGTACTTTTCAGAATCGCACGGATCGGAGTCATCGCACGGGG
GTGTGCGTTGTATTTTCAGGACCAACCATTCGATTAATGCCCCGCACAGG
TCTCGGGTACATGGCACGTATCGGCGTCTTGGCACCCGTGTGCGATAGAA
AAACCGAGAATAAAAAGACGATCGCACAGTGTGCCGAGACCCGCATCCTT
ACGGTATACCTCTTTATTTCCATTGGACGATTGTTACCCCTGAAGGTGAT
CCTGTCCACCCACGCTGTTGTGGCCAACGGGGGCATGATCACTCTCAACG
GCAGCCACGCGGTGGCTCTGGCGGCGCACGACCTCTCCGTGCCTGTCGTG
TGCTTCACCGGGCTGTCAAGGACAAGGACAGCATGAAGAACGTCAAGGTG
AGCATGCCATACACCACGCCCCCTAAGGCCCTCAGCCATGCCGGTATTTG
TGTGTACATCTGTAGCTCAATCGGGAGAACCTGGATGATGCTATTGGAGG
CCGTGATGTACCGCGAAATGTTTGACAGGAACGTGGCCTATTGCTTCAGT
GCCGCGTTCACTATCGTGTCGCGTGGAGTTTGATAGTATTCTGCGGTACC
TGCTCAATATTTTCTAAGACCGCTCGCGCGCTAGACT
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protein sequence of EsuBft1152_2a-0001

>EsuBft1152_2 ID=EsuBft1152_2|Name=EsuBft1152_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=99bp
MPRTGLGYMARIGVLAPVCDRKTENKKTIAQCAETRILTVYLFISIGRLL
PLKVILSTHAVVANGGMITLNGSHAVALAAHDLSVPVVCFTGLSRTRTA
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mRNA from alignment at Scaffold_463:506576..508540-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1152_2a-0001 ID=EsuBft1152_2a-0001|Name=EsuBft1152_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1965bp|location=Sequence derived from alignment at Scaffold_463:506576..508540- (Ectocarpus subulatus male Bft15b)
TCCGTGTTTGTTTACGGTAAAGATGCGGGTCTTGGCACGGATCGGCTACA
TCACACAGGCCGGGGTGATGGCACAGGGGGTGCGGAAAACAATCGGATTC
CAAGGGATTTAATTGATTATCGCACAGGTATTGTTCACTTCGCACAGGGA
TGTGCTGAGACCCCGGTACCTTCGGCGAGGTTGGGTGATACCGTGTTATC
CAGCTTTTGTCACGAATCGCTGCTGTACCAAGTTGCGTAGCTTGTATCAG
GGGCTCCACTGCTGTACTTTGGCATCGTAACGTTGCTCATGTGCAGCTGG
TGTTATTCAACATTGTCACTTTCGTCGGAATCGGCACACGGATTCTACTC
AATCAACCAACGCGTACAAACCACACGAGACCAAACGACCACAACCAACT
ACGGTACTGCGAAAAATACAGACTCCACGCTTGCTACCTCTGGTATCGTA
GCAAACGTGTTGCTTGTGTGTGGTGCGTGCGTGAGCACAGACCTCTGCAT
TGGGGGATTTCAATTTAGACTAATTCCCCCCTCGCCGCCTCGGGTTTTGT
TTCGCCGCATATGTGTGGTGTGATTGGGGTGCTGATATGCTGGTGTGCTT
ATGTGTTGTGTCTGTGTTCGTGATGTTGTGGTCCTGATGCTGCAATACCT
GCACAAGAACACGAAGTGCTGGTGTATGTCTGCTGTGATTTGTTCAGGAT
TGCACACATCGGAGTCTTGGCACGGGGGTGCCCGTTCAAAACACCCCATT
CGCCGCTTTGTACTTTTCAGAATCGCACGGATCGGAGTCATCGCACGGGG
GTGTGCGTTGTATTTTCAGGACCAACCATTCGATTAATGCCCCGCACAGG
TCTCGGGTACATGGCACGTATCGGCGTCTTGGCACCCGTGTGCGATAGAA
AAACCGAGAATAAAAAGACGATCGCACAGTGTGCCGAGACCCGCATCCTT
ACGGTATACCTCTTTATTTCCATTGGACGATTGTTACCCCTGAAGGTGAT
CCTGTCCACCCACGCTGTTGTGGCCAACGGGGGCATGATCACTCTCAACG
GCAGCCACGCGGTGGCTCTGGCGGCGCACGACCTCTCCGTGCCTGTCGTG
TGCTTCACCGGGCTGTCAAGGTACAGTACTGCTACTGCTACTGCTAGGAG
CTTGAGACTGGCGATACTGCTGTCATTTGCTCGACCTATACTAGGGTCGA
GATGTTCAGTCGTCTCGTAGAGCAAAACCTGTATCTTGCGCATGAACATA
GTTAAGAGCTACTGTTCTTGGTTGTTGTATTTTTGCACAACCTTGAGGTA
GGTTCGGCAGCGTCCTGAAATATGTTTTTGCCCTGGGGCTTTCGTTTGTT
TTCATTCTCTTCTGGCCCAAAACTTTGCTTATGCCTTGTTTTGTGGGAGG
CAAAGGGTCGAGAGCATGGTCTTGGTTTGTCCCCAACGTTGGGAATCCCT
CCCTTGCCATGCAGCAGTTGTAGAATTTTGGCGAGCTCAGCGAACTGCGA
CAAAGAGGTTGGTGTTTACGGCCAACTTTGTCCAAGAAGGCCACATCGCA
CTTAGAATTCGACCACGACCCCTTTCCCCCGCCCTTCACAATCGCCTCTT
TGTCTCCGCCGGTGGTCCGCTCGCTGTGCCCGCTGTTTCGTCACGACCGG
GACACGTTCAACTGCCTTCTATCGCCCGCTGCTGTGATGTCCTTCAAGGA
CAAGGACAGCATGAAGAACGTCAAGGTGAGCATGCCATACACCACGCCCC
CTAAGGCCCTCAGCCATGCCGGTATTTGTGTGTACATCTGTAGCTCAATC
GGGAGAACCTGGATGATGCTATTGGAGGCCGTGATGTACCGCGAAATGTT
TGACAGGAACGTGGCCTATTGCTTCAGTGCCGCGTTCACTATCGTGTCGC
GTGGAGTTTGATAGTATTCTGCGGTACCTGCTCAATATTTTCTAAGACCG
CTCGCGCGCTAGACT
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Coding sequence (CDS) from alignment at Scaffold_463:506576..508540-

>EsuBft1152_2a-0001 ID=EsuBft1152_2a-0001|Name=EsuBft1152_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=300bp|location=Sequence derived from alignment at Scaffold_463:506576..508540- (Ectocarpus subulatus male Bft15b)
ATGCCCCGCACAGGTCTCGGGTACATGGCACGTATCGGCGTCTTGGCACC
CGTGTGCGATAGAAAAACCGAGAATAAAAAGACGATCGCACAGTGTGCCG
AGACCCGCATCCTTACGGTATACCTCTTTATTTCCATTGGACGATTGTTA
CCCCTGAAGGTGATCCTGTCCACCCACGCTGTTGTGGCCAACGGGGGCAT
GATCACTCTCAACGGCAGCCACGCGGTGGCTCTGGCGGCGCACGACCTCT
CCGTGCCTGTCGTGTGCTTCACCGGGCTGTCAAGGACAAGGACAGCATGA
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