EsuBft1151_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1151_6a-0001
Unique Name	EsuBft1151_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_586	contig	Scaffold_586:112494..116854 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1151_6
Protein domains	PTHR32134
Protein domains	SSF52058
Protein domains	IPR008615
Owner	apollo_admin@sb-roscoff.fr
Note	f-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon	2
Length	2618
Hectar predicted targeting category	other localisation
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-06_003620.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1151_6a	EsuBft1151_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_586 112494..116854 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1151_6a-0001-exon	EsuBft1151_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_586 112494..114976 -
EsuBft1151_6a-0001-exon	agat-exon-69747	Ectocarpus subulatus male Bft15b	exon	Scaffold_586 116720..116854 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1151_6a-0001-exon	agat-three_prime_utr-1457	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_586 112494..113768 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1151_6a-0001-cds	EsuBft1151_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_586 113769..114976 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1151_6a-0001-exon	agat-five_prime_utr-935	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_586 116835..116854 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1151_6a-0001	EsuBft1151_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_586 113769..116834 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_586:112494..116854-
coding sequence from alignment at Scaffold_586:112494..116854-

spliced messenger RNA

>EsuBft1151_6a-0001 ID=EsuBft1151_6a-0001|Name=EsuBft1151_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2618bp|location=Sequence derived from alignment at Scaffold_586:112494..116854- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACCCAACACCCGCCAACTTTATGCAGCACTGCACAGCAGCGCACACAACA
ACGGCTAGATTGCCAGGGAGCCATCTCAAGCTTTTCTGTATCATGGTTAG
TACAAGGAGCGGGCGGCACACGAATGTCGAAACTGGTCCCAGCCGGTGCC
TAGACGCGCTCATCATCGCCCTGAACCAGGCAAGCGGCGGGGAGTGGTAC
ACGTCGACGATGCAACTCCAGCTCACGTCGTTGGAGCTCTGCGCGGCTTG
CCGCAGCATGCACCTGCTGAAGCTGAACGTGCAGCACGGGACGCCGCCCC
GCTTGTGGCGCGGCACCGCCACCACCCGCGAGACGCGAAGCGTGAAGAGG
CGCAACGTTACGCGCGTACCGGTGGTCCGAGCGCGCACGGTGACCTGGAA
GCTGCCGGGCGTGGCTCTGCGGAACATGACGGGTGACGCATGGTCGGAAG
TAACGACCTTTTCTCTGGGTCCCGGCTTCGACGACGACCTGCCCCGAGGT
ATTCAATGGCCCGAGAAGTTGACCCTGTTCGGCGTAGGCCCGGGCTTCAA
CCGTTCCGTGGAGCATCTGTCGCTGCCGGCGTCCGTGCGGTTTCTGGTCT
TCGGAGCGAGCTTCAACATGCCGATGGACAATTTCGCTTGGCCGCCTCTT
CTCCGCGTCCTTGTTCTGGGTCCGTCCTTTAGCCAGCCCATACACCCGGG
AGCGTTCCCGGAGTCGCTCCAAGTTTTGCTGTTCCAGGGGGACTTCACGC
ATCCGGTGGAGGGCTTGGTGTGGCCGAGGTCGCTGCTGCAGCTGTACGTT
TGGGGAGTACTCGCCCAGCCCCTGGGCAGGATTTCCTGGCCGGCATCGCT
ACAGGTTTTGCTGTTCGGCCACCTTCGGAACGAGTCGTTGGACGAGGTCA
CGTGGCCGGAGTCGCTGAGGCTGCTTACAATCGGGTCCGGCTTCAATCGA
CCGATACACCGGATCCGCTGGCCTGCTTCGGTGCGGGAGTTGTGTGTTGG
GCGGGACTTCGATCAGCCCATCGACAAGGTGACGTGGCCTGCATCGCTGT
CCGAGCTGAATCTCGGCGACAAGTTCAACCATCCAATCGACAAGGTGACG
TGGCCTCCCTCGCTCATGAAAATTGTCTTCGGGCAGTGCTTCGACCAAGC
GATTGGCGACGTCTCGTGGCCAGCATCGCTTCGGCAGCTCACCTTCAGCA
GGGACTTTCGCTTGCCGGACGAGAGCTTCGAGTGGCCGGCTTCTCTGGAG
CAGCTGACGATCGCTTGGCCTCCCGGCGAAGACCTGCCGTCTTGGCCTGG
CGTGCGAGTCTCGGGGGTTTGGAACCTCTTTTGGTATGTATAGGAGCCTT
GCCCATCGCCGACCCGCTTATTGATTTTCGTAGCCTGAGGTCGCACGGCG
CTCAGGAGATGGATGGCCACCGTTGTGATGGGGGCATGTGTGCAGGGTAC
AGTGCTTCGTTTATCGGCGAAGTTCTCTGGCTGTTTTTTTTTGCTTTTTT
CCTCACCTCAAATCTGCGCTCGCAGCATTTGCGCAGTTTACTCCAACCCG
TGGACACACAAAAAGGGTTGCTCTCGCTGAGCCCTCCTTTTCACCCCTCC
TGCAGTGCTTTCCCCTCGATTCTTAATGCGAGAAGAGTGCAGGACTCTCT
TCCCTATGTGTACACACGAACTAGCGCTTGCCACCCAGGGCAGGAATAAA
AGCGAGAGAAAAACTCACTTTGCAAGAAAAGCTCGCTTGCGCCGGGAATC
GAACGCCTGACCCTGGCCTCTAGAACGTTTTCGAGGATGCCAACTGCACT
ACTACCGGGACCGACCTTTGGGGTGTTGGTGAGATTTTTTCGATGCGATT
ACAAGCACGGCGAAGAGCGCGGTTCGGGTGTTAATATTTTATGTATAACA
TGGCATGTATATTTTTGTTGGATGTTGTGCTTTCGTGTGTTGACCCGGTG
GCCTCGTTGTTCGCCGCCGATTTCCTTCTGCATGTCCATGTGCGATAGCT
CTGAGCATTCATGTCTCTCAGGAACAGCACGTGCTGTGCGGCATCCAGTG
ATGTGGTTTCTACTCCAAACCCGAGCTCGGGGTAACAGGATTTCGACGTC
GCAACTCTCGTGTGCCTCTCCGGCGCTTGCAGTTTGTGTGCCTTTGATAG
TATGTGGGGATAAAAGGTATCAATGTTAATCAGGAGGAGGCGCTGTGTGT
ATGTCCCTGTGTACATGTACGCGAGTTCAGCGTCGCCCACTGGCTCTACT
CTTTGGCGAACGATCCCGAAGGTAGCTCTCCGAATGAGCGTCTTGGCACA
TCAACACTTACGGGACGATCTCGTGGTGAAAATCACGAAACGTTACAACA
AGCAGAGGGCTTGGTGACGGCTAGCCTCTCAGGCTTTTCTGTTCAGAGGG
CTACAGTAGCGGTGAGAGAGGGTTGACGTTATAGGTGTGTTCGTGCGTTC
GCTGGGGGGTACGGCGACTTCCAACTATAAATTAAAATCGTTTGCTCAAC
GAGCAACGAGATGCGGCAGCACGAACGACTGACCACATTAACACGAAAAA
AAATACAGCATCAGATACTACGAGATGCTGGATGGCGTGAGGGCGACCAT
CGGCATACATGTTGATCA

protein sequence of EsuBft1151_6a-0001

>EsuBft1151_6 ID=EsuBft1151_6|Name=EsuBft1151_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=440bp
MQHCTAAHTTTARLPGSHLKLFCIMVSTRSGRHTNVETGPSRCLDALIIA
LNQASGGEWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTA
TTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLG
PGFDDDLPRGIQWPEKLTLFGVGPGFNRSVEHLSLPASVRFLVFGASFNM
PMDNFAWPPLLRVLVLGPSFSQPIHPGAFPESLQVLLFQGDFTHPVEGLV
WPRSLLQLYVWGVLAQPLGRISWPASLQVLLFGHLRNESLDEVTWPESLR
LLTIGSGFNRPIHRIRWPASVRELCVGRDFDQPIDKVTWPASLSELNLGD
KFNHPIDKVTWPPSLMKIVFGQCFDQAIGDVSWPASLRQLTFSRDFRLPD
ESFEWPASLEQLTIAWPPGEDLPSWPGVRVSGVWNLFWYV

mRNA from alignment at Scaffold_586:112494..116854-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1151_6a-0001 ID=EsuBft1151_6a-0001|Name=EsuBft1151_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4361bp|location=Sequence derived from alignment at Scaffold_586:112494..116854- (Ectocarpus subulatus male Bft15b)
ACCCAACACCCGCCAACTTTATGCAGCACTGCACAGCAGCGCACACAACA
ACGGCTAGATTGCCAGGGAGCCATCTCAAGCTTTTCTGTATCATGGTTAG
TACAAGGAGCGGGCGGCACACGAATGTCGAAACTGGTGAGTTTGTGGCAG
CCATGTCACTGCGGTCTGTTGTGAGGCGTTGTACGACGCGAGTAGTTATT
CTGTAATTCAAAAACTGACATATTGACCCCTTGTGTTGTATGCATAACAT
GAAGCAGGGAAGAGTCTAAACATCTAAGCTGCTACCCGAATCCCCTCCCC
ACGAATCCCTAGTGCGGGATTTCCAGCCGGAAAGACAGAAACGTGTACAT
AAGCAAATTTAGAGATGGGATGTTTTACAAAGCGACACCAAACGAAAGAA
GAGAACTGCAAGGAGCATTCGACGGCGCCCCCCCTAAGATCATCAGGTTT
TTATGTAGACCAATAACCAGAAACGGGTATACCCGGGTACTTTATCACCA
CTTTAGGCTACAGTTAGAAATCAACACGCTTGCCCCCCCAGGCTGTCAGC
TGATTGGCCGAAAAACCATTGTTCCCATTTCTGAAGAAACCTCCATCAGG
TATAACTTCCGCTGGAATTAGGACCCTCTGGTGTGACCGATACTGGTTAC
TGGTGTACCCGGAAGAGGTCAACTTTGCACCCAGAAATGGTCATATAATC
CCGGCGCTCGACGCTCTAGCATAAAACCCGCAGAAAAAAACGTGTGCCAC
ACATACCGTGTACCACACATACATAACCCCAACCAAACCACCAACAACGC
TCGCTCGTTCACCGTTCATGGGCACCGCCTCCATAGGACACCGGCCCTTC
TCAAAAGAGGGTCGGACTCGCTTGACGCGCGAGTACTTCGGTGTGGTACT
GATCAGTAAAAGCACAGAGAGAGAGGCACAGAGAGAGAAAAAAACGGGCA
CGACCTGCCTCGTGCATCATGCTTCCGAGACACAGGACGCACAGGACACA
GACAGCGGTTTATTGGTTTCGCCGCGATCTACGGCGGATGCTGTCGGAAA
TCGGTGTCGTCTTTATTTCCAAGTGTACCCTGAAATGGTGATTATCTATC
CGGGTTTACCCGTTTCTGGTTACTCCTCTTTTATGTATGCTGTCTTTCGA
GACAATGTTTTGTCGTAACCAAGGGACGACTGCAGTCTCACATCTGACTC
TGACGATCCATCGACATTTGGTCGTCACACCGTAGCAGTACATAGCATAC
AGCAATGCATAACAAACATTCACAAACTCGCAGGCCACCTTGCTCAAGAC
CATGTGAGTTGAATTACAAGACTGAATACAAGTACAGATCCTGCACTGAG
TTCGTTGGGCTCTTCCAGTCAAAACACATCGTCAGCTGCGTGAGCTTGGG
AAATGCCACAACTGGCAGCTGGCAGTCAGCTATGGGCTGGCCCTGCTACA
AGCCTTCATTGTCTCATCTTGCATTACCCCCTGAGGACATGAGCCCACTC
CACCACTGTATGTTCGAATGTTTGCTCAAGAAGCAGCGACCACATGTCAT
TACTTAGCGCTATGCAAGGGCCCTCCGTTTGCTCCCGCTCGGCGACTGAC
ATGCCGGCGTTTTCAACCTAGCACCCATTCGTTGTTTTGCCGAACAAGGT
TGTATTGCATCCCGCGCGTCGATGTACGCACACGAATGGTGCCGGCACCT
TTGTCATGCATCCTGAAAGATCGCTTTGTCCACTTGTGGCGCCAGCAGCG
CCCGAAACCTTTGTATACCACCCAGATTTGAAGGCGAGCTGGGGCTGCTT
GAATTCTGGACTGCCCGCGAAGAACGACTCAACCGACAGAAGACTTTTTG
CTGCGTGCGTGTTTTCTGGCTCGCGCAGGTCCCAGCCGGTGCCTAGACGC
GCTCATCATCGCCCTGAACCAGGCAAGCGGCGGGGAGTGGTACACGTCGA
CGATGCAACTCCAGCTCACGTCGTTGGAGCTCTGCGCGGCTTGCCGCAGC
ATGCACCTGCTGAAGCTGAACGTGCAGCACGGGACGCCGCCCCGCTTGTG
GCGCGGCACCGCCACCACCCGCGAGACGCGAAGCGTGAAGAGGCGCAACG
TTACGCGCGTACCGGTGGTCCGAGCGCGCACGGTGACCTGGAAGCTGCCG
GGCGTGGCTCTGCGGAACATGACGGGTGACGCATGGTCGGAAGTAACGAC
CTTTTCTCTGGGTCCCGGCTTCGACGACGACCTGCCCCGAGGTATTCAAT
GGCCCGAGAAGTTGACCCTGTTCGGCGTAGGCCCGGGCTTCAACCGTTCC
GTGGAGCATCTGTCGCTGCCGGCGTCCGTGCGGTTTCTGGTCTTCGGAGC
GAGCTTCAACATGCCGATGGACAATTTCGCTTGGCCGCCTCTTCTCCGCG
TCCTTGTTCTGGGTCCGTCCTTTAGCCAGCCCATACACCCGGGAGCGTTC
CCGGAGTCGCTCCAAGTTTTGCTGTTCCAGGGGGACTTCACGCATCCGGT
GGAGGGCTTGGTGTGGCCGAGGTCGCTGCTGCAGCTGTACGTTTGGGGAG
TACTCGCCCAGCCCCTGGGCAGGATTTCCTGGCCGGCATCGCTACAGGTT
TTGCTGTTCGGCCACCTTCGGAACGAGTCGTTGGACGAGGTCACGTGGCC
GGAGTCGCTGAGGCTGCTTACAATCGGGTCCGGCTTCAATCGACCGATAC
ACCGGATCCGCTGGCCTGCTTCGGTGCGGGAGTTGTGTGTTGGGCGGGAC
TTCGATCAGCCCATCGACAAGGTGACGTGGCCTGCATCGCTGTCCGAGCT
GAATCTCGGCGACAAGTTCAACCATCCAATCGACAAGGTGACGTGGCCTC
CCTCGCTCATGAAAATTGTCTTCGGGCAGTGCTTCGACCAAGCGATTGGC
GACGTCTCGTGGCCAGCATCGCTTCGGCAGCTCACCTTCAGCAGGGACTT
TCGCTTGCCGGACGAGAGCTTCGAGTGGCCGGCTTCTCTGGAGCAGCTGA
CGATCGCTTGGCCTCCCGGCGAAGACCTGCCGTCTTGGCCTGGCGTGCGA
GTCTCGGGGGTTTGGAACCTCTTTTGGTATGTATAGGAGCCTTGCCCATC
GCCGACCCGCTTATTGATTTTCGTAGCCTGAGGTCGCACGGCGCTCAGGA
GATGGATGGCCACCGTTGTGATGGGGGCATGTGTGCAGGGTACAGTGCTT
CGTTTATCGGCGAAGTTCTCTGGCTGTTTTTTTTTGCTTTTTTCCTCACC
TCAAATCTGCGCTCGCAGCATTTGCGCAGTTTACTCCAACCCGTGGACAC
ACAAAAAGGGTTGCTCTCGCTGAGCCCTCCTTTTCACCCCTCCTGCAGTG
CTTTCCCCTCGATTCTTAATGCGAGAAGAGTGCAGGACTCTCTTCCCTAT
GTGTACACACGAACTAGCGCTTGCCACCCAGGGCAGGAATAAAAGCGAGA
GAAAAACTCACTTTGCAAGAAAAGCTCGCTTGCGCCGGGAATCGAACGCC
TGACCCTGGCCTCTAGAACGTTTTCGAGGATGCCAACTGCACTACTACCG
GGACCGACCTTTGGGGTGTTGGTGAGATTTTTTCGATGCGATTACAAGCA
CGGCGAAGAGCGCGGTTCGGGTGTTAATATTTTATGTATAACATGGCATG
TATATTTTTGTTGGATGTTGTGCTTTCGTGTGTTGACCCGGTGGCCTCGT
TGTTCGCCGCCGATTTCCTTCTGCATGTCCATGTGCGATAGCTCTGAGCA
TTCATGTCTCTCAGGAACAGCACGTGCTGTGCGGCATCCAGTGATGTGGT
TTCTACTCCAAACCCGAGCTCGGGGTAACAGGATTTCGACGTCGCAACTC
TCGTGTGCCTCTCCGGCGCTTGCAGTTTGTGTGCCTTTGATAGTATGTGG
GGATAAAAGGTATCAATGTTAATCAGGAGGAGGCGCTGTGTGTATGTCCC
TGTGTACATGTACGCGAGTTCAGCGTCGCCCACTGGCTCTACTCTTTGGC
GAACGATCCCGAAGGTAGCTCTCCGAATGAGCGTCTTGGCACATCAACAC
TTACGGGACGATCTCGTGGTGAAAATCACGAAACGTTACAACAAGCAGAG
GGCTTGGTGACGGCTAGCCTCTCAGGCTTTTCTGTTCAGAGGGCTACAGT
AGCGGTGAGAGAGGGTTGACGTTATAGGTGTGTTCGTGCGTTCGCTGGGG
GGTACGGCGACTTCCAACTATAAATTAAAATCGTTTGCTCAACGAGCAAC
GAGATGCGGCAGCACGAACGACTGACCACATTAACACGAAAAAAAATACA
GCATCAGATACTACGAGATGCTGGATGGCGTGAGGGCGACCATCGGCATA
CATGTTGATCA

Coding sequence (CDS) from alignment at Scaffold_586:112494..116854-

>EsuBft1151_6a-0001 ID=EsuBft1151_6a-0001|Name=EsuBft1151_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1323bp|location=Sequence derived from alignment at Scaffold_586:112494..116854- (Ectocarpus subulatus male Bft15b)
ATGCAGCACTGCACAGCAGCGCACACAACAACGGCTAGATTGCCAGGGAG
CCATCTCAAGCTTTTCTGTATCATGGTTAGTACAAGGAGCGGGCGGCACA
CGAATGTCGAAACTGGTCCCAGCCGGTGCCTAGACGCGCTCATCATCGCC
CTGAACCAGGCAAGCGGCGGGGAGTGGTACACGTCGACGATGCAACTCCA
GCTCACGTCGTTGGAGCTCTGCGCGGCTTGCCGCAGCATGCACCTGCTGA
AGCTGAACGTGCAGCACGGGACGCCGCCCCGCTTGTGGCGCGGCACCGCC
ACCACCCGCGAGACGCGAAGCGTGAAGAGGCGCAACGTTACGCGCGTACC
GGTGGTCCGAGCGCGCACGGTGACCTGGAAGCTGCCGGGCGTGGCTCTGC
GGAACATGACGGGTGACGCATGGTCGGAAGTAACGACCTTTTCTCTGGGT
CCCGGCTTCGACGACGACCTGCCCCGAGGTATTCAATGGCCCGAGAAGTT
GACCCTGTTCGGCGTAGGCCCGGGCTTCAACCGTTCCGTGGAGCATCTGT
CGCTGCCGGCGTCCGTGCGGTTTCTGGTCTTCGGAGCGAGCTTCAACATG
CCGATGGACAATTTCGCTTGGCCGCCTCTTCTCCGCGTCCTTGTTCTGGG
TCCGTCCTTTAGCCAGCCCATACACCCGGGAGCGTTCCCGGAGTCGCTCC
AAGTTTTGCTGTTCCAGGGGGACTTCACGCATCCGGTGGAGGGCTTGGTG
TGGCCGAGGTCGCTGCTGCAGCTGTACGTTTGGGGAGTACTCGCCCAGCC
CCTGGGCAGGATTTCCTGGCCGGCATCGCTACAGGTTTTGCTGTTCGGCC
ACCTTCGGAACGAGTCGTTGGACGAGGTCACGTGGCCGGAGTCGCTGAGG
CTGCTTACAATCGGGTCCGGCTTCAATCGACCGATACACCGGATCCGCTG
GCCTGCTTCGGTGCGGGAGTTGTGTGTTGGGCGGGACTTCGATCAGCCCA
TCGACAAGGTGACGTGGCCTGCATCGCTGTCCGAGCTGAATCTCGGCGAC
AAGTTCAACCATCCAATCGACAAGGTGACGTGGCCTCCCTCGCTCATGAA
AATTGTCTTCGGGCAGTGCTTCGACCAAGCGATTGGCGACGTCTCGTGGC
CAGCATCGCTTCGGCAGCTCACCTTCAGCAGGGACTTTCGCTTGCCGGAC
GAGAGCTTCGAGTGGCCGGCTTCTCTGGAGCAGCTGACGATCGCTTGGCC
TCCCGGCGAAGACCTGCCGTCTTGGCCTGGCGTGCGAGTCTCGGGGGTTT
GGAACCTCTTTTGGTATGTATAG