EsuBft114_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft114_6a-0001
Unique NameEsuBft114_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:1095932..1097081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft114_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length109
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft114_6aEsuBft114_6aEctocarpus subulatus male Bft15bgeneScaffold_129 1095932..1097081 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_6a-0001-exonEsuBft114_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 1095932..1096210 +
EsuBft114_6a-0001-exonagat-exon-15545Ectocarpus subulatus male Bft15bexonScaffold_129 1096267..1097081 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_6a-0001-exonagat-five_prime_utr-927Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 1095932..1096075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_6a-0001-cdsEsuBft114_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 1096076..1096210 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_6a-0001-exonagat-three_prime_utr-1446Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 1096279..1097081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_6a-0001EsuBft114_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 1096076..1096278 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft114_6a-0001 ID=EsuBft114_6a-0001|Name=EsuBft114_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1094bp|location=Sequence derived from alignment at Scaffold_129:1095932..1097081+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGAAGGGGAGACGGAAAGGGAGCAAAAGCCGAGCTGGATCGCTCCCTCCC
GGGCCTGACAGCCCGACCAACAAGCGACGGCGAGTAGCCAACGAAAGGGC
CAACAGACAGGCGTGATCAGGTTTTGAATTCACATCTACTGGTGATGGTG
GAGCGTCGTCGCAGCAACCTGGTTTGTCTAGTGGAAGCGGCCACAACGTA
TGGGATGAGGATGGTGGCGATGCCGCCGGCCACCTGCAGGACCCTGCAGC
ATCGGCGATCCCCGACGAGAGATAACCTGGTGCTACCTTGATGTACGGGT
GTTTCCTGTAGAGCACAGCAGTGTACAGCTGCTGCACAATGATCCAACAT
TAATGATCCACTACTGCTCTAGAGTACAACATGAACTGTAGACTGCTGTA
CTCAACGCGCTGTACTTTAAAAATGAAGTCAACGCCCTGCCGTGTCGTCT
TGATGCTGTCCTTGGCTATATTGCTTCTCAACGCTGCCCTCGCTGTCTGT
GGTGTGCCCTGCTATCTGCTGTACATGCAAGCGGTGCTGTATCTATGCAT
ACACAGTCATGCTCGGTACATGGCGCCAAATATCACCCCCCCCCTCCCCT
TAGCCCCCACAATCTAGACTTCAGTGGGTTGGAGCTGTTGGCAAAGCGCT
GTAAAACACGCCACCCCAAATATAGCCCCCGTAGTATGCGCTACCAAAGA
CGCGTGACGCATGGATGCGTGGAGTGAGGATTGCTTACGGAAACCTCACA
GGTTGAGTGATGTAGGAGATTGCCGGACACATAGACGTGTTGAGTGATTA
TAGCTGTATACTGAAACCCCACGGAAAGGGGAGGTTTGAGATTGCCAGAC
ACATAGACGGGTTGCGTGGGGATAGCTGCTGGAACCCCACGGGTTGAGTG
ATGTTGGAGTGCCGGACACATGGACGCGTTGAGTGAGGATAGACACATAT
TGAACCTCACAGGTTATTTGCATTGGAGATTGCGAGACACCTAGACGTGT
TGAGTGAGGATAGCTGCATACTGAAACCTCACAGATGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft114_6a-0001

>EsuBft114_6 ID=EsuBft114_6|Name=EsuBft114_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=48bp
MVERRRSNLVCLVEAATTYGMRMVAMPPATCRTLQHRRSPTRDNLVLP
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mRNA from alignment at Scaffold_129:1095932..1097081+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft114_6a-0001 ID=EsuBft114_6a-0001|Name=EsuBft114_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1150bp|location=Sequence derived from alignment at Scaffold_129:1095932..1097081+ (Ectocarpus subulatus male Bft15b)
GGAAGGGGAGACGGAAAGGGAGCAAAAGCCGAGCTGGATCGCTCCCTCCC
GGGCCTGACAGCCCGACCAACAAGCGACGGCGAGTAGCCAACGAAAGGGC
CAACAGACAGGCGTGATCAGGTTTTGAATTCACATCTACTGGTGATGGTG
GAGCGTCGTCGCAGCAACCTGGTTTGTCTAGTGGAAGCGGCCACAACGTA
TGGGATGAGGATGGTGGCGATGCCGCCGGCCACCTGCAGGACCCTGCAGC
ATCGGCGATCCCCGACGAGAGATAACCTGGTTGCTGGTGTTGCACTCGTC
CTGGTAAAGCTGCTTGCTGTCACCCATTGTTGCAGGTGCTACCTTGATGT
ACGGGTGTTTCCTGTAGAGCACAGCAGTGTACAGCTGCTGCACAATGATC
CAACATTAATGATCCACTACTGCTCTAGAGTACAACATGAACTGTAGACT
GCTGTACTCAACGCGCTGTACTTTAAAAATGAAGTCAACGCCCTGCCGTG
TCGTCTTGATGCTGTCCTTGGCTATATTGCTTCTCAACGCTGCCCTCGCT
GTCTGTGGTGTGCCCTGCTATCTGCTGTACATGCAAGCGGTGCTGTATCT
ATGCATACACAGTCATGCTCGGTACATGGCGCCAAATATCACCCCCCCCC
TCCCCTTAGCCCCCACAATCTAGACTTCAGTGGGTTGGAGCTGTTGGCAA
AGCGCTGTAAAACACGCCACCCCAAATATAGCCCCCGTAGTATGCGCTAC
CAAAGACGCGTGACGCATGGATGCGTGGAGTGAGGATTGCTTACGGAAAC
CTCACAGGTTGAGTGATGTAGGAGATTGCCGGACACATAGACGTGTTGAG
TGATTATAGCTGTATACTGAAACCCCACGGAAAGGGGAGGTTTGAGATTG
CCAGACACATAGACGGGTTGCGTGGGGATAGCTGCTGGAACCCCACGGGT
TGAGTGATGTTGGAGTGCCGGACACATGGACGCGTTGAGTGAGGATAGAC
ACATATTGAACCTCACAGGTTATTTGCATTGGAGATTGCGAGACACCTAG
ACGTGTTGAGTGAGGATAGCTGCATACTGAAACCTCACAGATGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_129:1095932..1097081+

>EsuBft114_6a-0001 ID=EsuBft114_6a-0001|Name=EsuBft114_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=147bp|location=Sequence derived from alignment at Scaffold_129:1095932..1097081+ (Ectocarpus subulatus male Bft15b)
ATGGTGGAGCGTCGTCGCAGCAACCTGGTTTGTCTAGTGGAAGCGGCCAC
AACGTATGGGATGAGGATGGTGGCGATGCCGCCGGCCACCTGCAGGACCC
TGCAGCATCGGCGATCCCCGACGAGAGATAACCTGGTGCTACCTTGA
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