EsuBft114_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft114_4a-0001
Unique NameEsuBft114_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:1110550..1112106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft114_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length130
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft114_4aEsuBft114_4aEctocarpus subulatus male Bft15bgeneScaffold_129 1110550..1112106 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_4a-0001-exonEsuBft114_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 1110550..1111832 -
EsuBft114_4a-0001-exonagat-exon-15544Ectocarpus subulatus male Bft15bexonScaffold_129 1112090..1112106 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_4a-0001-exonagat-three_prime_utr-1445Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 1110550..1111768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_4a-0001-cdsEsuBft114_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 1111769..1111832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_4a-0001EsuBft114_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 1111769..1112106 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft114_4a-0001 ID=EsuBft114_4a-0001|Name=EsuBft114_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1300bp|location=Sequence derived from alignment at Scaffold_129:1110550..1112106- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCAAGTCCCCGTTGCCCCTATCCTCGCCTNTCCAGACACCGCTCC
CCCTGGTCTTCCCACTGCACTTCCACGCTAATCGCATCATCCACGAAAAA
CCGCAAAAACGTCGGATCATTCTTCCCTCCCCCTACCTCCGGCTGCACCT
TGCATTGCGGTGGAATCGACACTATCGCTTTCCCCGTTGGCGGAGCGATC
TTTACGTGTGCCGCTGCCCGTACCCCGGAATGCGTTACCCGTACCGTGTC
TCTCGTCGTCTGTCGGTGTACGTGTTCTATCGCCGACGCCACCAACCCCC
ACCACCCAGGACTGCCCCGCCATCCGAACTGCAACCGAAGGTCTACTACC
AGGAATTCCCCTACCACATATCCGAAAACCGGTGCCCCTGCGGGGTCTAC
TGGAACTTGGCGAAACGCGCTTTTCACGTCCATTTTTGCAACGTTATCGT
CCTCCTTGGATACCTAGCTCTTAGCCCCAGGGACCGTTCAAACACCTCCT
TCATTACAGTCGCCATCCCGCACGCCGGAATTTCTTCAAAAAAAGTGGTG
GCATTCACCGGCCGCCCTTCCCCCCCCCGTTGCTTCCGCTACTGGTATAG
TCAGATCGTGTATCACCCGAAGTTTCTCTTTCTCCTCCACCACCCCGACC
GGGGACACCCGCAAACCTGGAACTTTTTTCGCCAACTCCTCTCCTGAACA
TCACCGCCCTGCCTGCTTCTACGTCCTCCACCACCTTCTGCCAAATCGCT
CCGTGCCATTTTTGCGCGCTCGGATGGTTTCCGTACGCTAACCCATGCTT
CAGGTCTCCCCCCGGTCCTACTGCGATGGTTTACCAGCACGTCAACGTGT
TCAAAGCTCCCAAAACTTCTGGCAATCTTTTTCGCATCCATATGAGGCGC
CAACAAACGTCCACCCAGACTCTGCACGACACGTCCGATTCCACCTCCGC
TAGCATCTATCATCTCTTCCTTCGGGGGGGGGGCGCTCAAAAGGGGTTCA
CTCGCTGGTTCAGTTTGTGCATTGGAAGGGAAGGGCACGGGGCGGATACG
GGGGCCAAACTCTCAGACAACACGGCCCACGCCATATCGGCCAACACTGT
CATCATTTTCAATTGTTCCGGTGACCCGGTTTTCGTTTCCCGGGGCCTCG
ATAGCGCTGCTCGCCACCTTGCTTTTCCCTCAGCCGCGCCACCCGGTGCT
GTACCTGCTGCTCCAGATGCCACCGACCCCGGCACCGGCCCCGTCTCCGC
GCCCATGACCCAGTCCCCGCTCGCGCGCGCGCCCCATGCTGTAACCTCCC
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protein sequence of EsuBft114_4a-0001

>EsuBft114_4 ID=EsuBft114_4|Name=EsuBft114_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=26bp
MFQVPVAPILAXPDTAPPGLPTALPR
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mRNA from alignment at Scaffold_129:1110550..1112106-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft114_4a-0001 ID=EsuBft114_4a-0001|Name=EsuBft114_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1557bp|location=Sequence derived from alignment at Scaffold_129:1110550..1112106- (Ectocarpus subulatus male Bft15b)
ATGTTCCAAGTCCCCGTGTAAGTTTTTCTAGTCGACTCTGCAACTCTTCC
AAGTGCGTCTTCGCGCAAATCTCTGCACATAGCTGCTGCTCCTCGGCCTT
CAGCTCCTGCACCTGCCAACGTGTTCCGGGCGATTCCGATTGCAAGTTGT
CAGCGATCTCTTGATCCTTCCATCTCGTTATGCCATCTGCTAGCCTATTC
TCCACGCCCGGTATATGCCTCGCCTGAAAACACCAGCCCCCAATCGTCTC
CAAGGCTCCCATCATCCTCATCAGTGCCCCTATCCTCGCCTNTCCAGACA
CCGCTCCCCCTGGTCTTCCCACTGCACTTCCACGCTAATCGCATCATCCA
CGAAAAACCGCAAAAACGTCGGATCATTCTTCCCTCCCCCTACCTCCGGC
TGCACCTTGCATTGCGGTGGAATCGACACTATCGCTTTCCCCGTTGGCGG
AGCGATCTTTACGTGTGCCGCTGCCCGTACCCCGGAATGCGTTACCCGTA
CCGTGTCTCTCGTCGTCTGTCGGTGTACGTGTTCTATCGCCGACGCCACC
AACCCCCACCACCCAGGACTGCCCCGCCATCCGAACTGCAACCGAAGGTC
TACTACCAGGAATTCCCCTACCACATATCCGAAAACCGGTGCCCCTGCGG
GGTCTACTGGAACTTGGCGAAACGCGCTTTTCACGTCCATTTTTGCAACG
TTATCGTCCTCCTTGGATACCTAGCTCTTAGCCCCAGGGACCGTTCAAAC
ACCTCCTTCATTACAGTCGCCATCCCGCACGCCGGAATTTCTTCAAAAAA
AGTGGTGGCATTCACCGGCCGCCCTTCCCCCCCCCGTTGCTTCCGCTACT
GGTATAGTCAGATCGTGTATCACCCGAAGTTTCTCTTTCTCCTCCACCAC
CCCGACCGGGGACACCCGCAAACCTGGAACTTTTTTCGCCAACTCCTCTC
CTGAACATCACCGCCCTGCCTGCTTCTACGTCCTCCACCACCTTCTGCCA
AATCGCTCCGTGCCATTTTTGCGCGCTCGGATGGTTTCCGTACGCTAACC
CATGCTTCAGGTCTCCCCCCGGTCCTACTGCGATGGTTTACCAGCACGTC
AACGTGTTCAAAGCTCCCAAAACTTCTGGCAATCTTTTTCGCATCCATAT
GAGGCGCCAACAAACGTCCACCCAGACTCTGCACGACACGTCCGATTCCA
CCTCCGCTAGCATCTATCATCTCTTCCTTCGGGGGGGGGGCGCTCAAAAG
GGGTTCACTCGCTGGTTCAGTTTGTGCATTGGAAGGGAAGGGCACGGGGC
GGATACGGGGGCCAAACTCTCAGACAACACGGCCCACGCCATATCGGCCA
ACACTGTCATCATTTTCAATTGTTCCGGTGACCCGGTTTTCGTTTCCCGG
GGCCTCGATAGCGCTGCTCGCCACCTTGCTTTTCCCTCAGCCGCGCCACC
CGGTGCTGTACCTGCTGCTCCAGATGCCACCGACCCCGGCACCGGCCCCG
TCTCCGCGCCCATGACCCAGTCCCCGCTCGCGCGCGCGCCCCATGCTGTA
ACCTCCC
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Coding sequence (CDS) from alignment at Scaffold_129:1110550..1112106-

>EsuBft114_4a-0001 ID=EsuBft114_4a-0001|Name=EsuBft114_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=81bp|location=Sequence derived from alignment at Scaffold_129:1110550..1112106- (Ectocarpus subulatus male Bft15b)
ATGTTCCAAGTCCCCGTTGCCCCTATCCTCGCCTNTCCAGACACCGCTCC
CCCTGGTCTTCCCACTGCACTTCCACGCTAA
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