EsuBft114_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft114_3a-0001
Unique Name	EsuBft114_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:1119298..1121644 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FSK2
ProteomeId	EsuBft114_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	228
Hectar predicted targeting category	other localisation
Evalue	6.46e-65
EggNOG OGs	2E2RF@1\|root,2S9YA@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Plant transposon protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft114_3a	EsuBft114_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 1119298..1121644 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft114_3a-0001-exon	agat-exon-15543	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 1119298..1119431 +
EsuBft114_3a-0001-exon	EsuBft114_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 1119499..1121644 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft114_3a-0001-cds	EsuBft114_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 1119298..1119431 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft114_3a-0001-exon	agat-three_prime_utr-1444	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 1119791..1121644 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft114_3a-0001	EsuBft114_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 1119298..1119790 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:1119298..1121644+
coding sequence from alignment at Scaffold_129:1119298..1121644+

spliced messenger RNA

>EsuBft114_3a-0001 ID=EsuBft114_3a-0001|Name=EsuBft114_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2280bp|location=Sequence derived from alignment at Scaffold_129:1119298..1121644+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTGGATGAGCGCGAAGACCATGCAGGGGATGTTCCACAAGTTCTG
CAGGCACTTCGCACGGGAGATGTATGATGAACAAATTCACCTCCCTACGG
AAGAGAGCGGCAAGCTGGACCACGTCATGAAGCAGTGCCCCTACAACCAA
GCCCGTTCGATCACAGGCGAGGAGGGGTTTCCCACGATCGCGTACGAGGT
CACGGTTGATCACGCTGGCCGGGCAATTGCCGTGACTGAGGGTTTCACCG
GCTCGACGAACGACAAGACCATCGTCTGCTGGGATGCCGCGGTGGAGAAG
ATTCGGACGGACAAGCAGTACACGGAGAAGACGTTCGACGTGTACAATGA
GGACGGCACGACGACGACGCTCAAGGGGTGCTACTTGCTCGTCGTAAACG
GGTACCACAAGGTGCATAGACTATAAAATAAGTACTACATACAGTGTTTG
AGTGGCGAAAACATTTGTTTGGAAGAGACATGTATCCGGCCTGAGACAGA
GAGTGCAGACAGACAGAGACAGAGACAGGGAGAAAGAGAGAGCGCTGGCC
AGTCAAGTCTTTGTTCTCGGGGAAAATGACGCAGAGCTACTTTCGGACCG
TTTCAACGCAAATCGTTTCATGGTAGTGAGATGTCGGATACGGCAATCAA
AACCTCGGCTGCCCGCTCTTGCAATCTACTCCGGTGTTTCATAGCTGCTG
TTATTTTTCGAGCGCCTCCGTTCAACCCCGAAGCCCCCCCTTGAGTCTCC
GAGTTTGAATTTCACAGCTTTCAACAACGTTGTTGAGTAGCTTGGTGCGC
CCGGCGCAGTTGTAGATGGCAAAAATAAAAGAACCGCGCGGCGAGTTTGC
CGGCAACGATATAATACAGTAAACTAGTTAGGCCTGTCCTCCATCGGCCG
TTTTATTTTCGATTTAGATACACTAACTTTATTTCTATACTAATTTCAAG
TAATTCCACCTTCTTATTCTCCGTCATACAAGCAAAACGGCCGATGGAGG
ACAGGCCTAAAAACTAGTAAACTGCCCACGGATGCGGTTACCCGCCGCAT
CTGTGATGTTCCGGAGCGTGATGGCTCTGATGTGTTGAAGCTGGTGCTGT
GATAGCTGTTGTGATGGCGTGATAGCCTAGAGGCGTGACAGCCTGGCAGC
GTGATAGCCGGTGGATATGTGTGGACACGGGCGTGATAGCCCAGAGCGTG
ATAGCCGGGAAAAGGAAGATGAAATTTATCTAAGGGCACGTGGTCAACAC
CGTTGCAGGCACGTATACCCCGCAAACAGCAATATGTATGTGGCAAAGAT
GGTGCCACCATTCCCCCAATGTACCACAACTGCGGAACCCCAAAAATTCC
CCGCTCCATCTTCTCGGAACGTTCCTCGGTTGCAATAATCTGTCAATGCT
GTGAGTACATCCAACAGCCCCCCTGCTCGCTGCATTGTCAAGAATATTCC
CGGACTTACGTATCACACAAAACCCATCCCAAAAGCTCCAGAAATCAATG
TCAATGTCCAACAGTAGTCGGATCTCCTCCTATTCTCTTGTAACAAAAAT
AAACCATAAAACCAGAAACTAGTAGTTCCTACCAGAATTTCCATCGGCCC
CCATTCATTGTGTCCAGAATCTCCAAGGATCAAAACATTCACTACAACCA
TTAAATCAGAAACACTGATGATTGGAATTCCCATCGGTTGAGAACCATTA
AACCAGGAACAACACCACCAAGAATTTCCATCGGTCGCTGGTGAATTTTC
CAAATTTCCAATATCAAATCATTCAAAACTCAAATAATAGAAACAACCGC
CATGGGTCATATCGGAAACAAATTAATACAAACTATTATGGATATTGTGG
TATACCCCAGCAAGGTGGCAGAGAGGCTGTGTCCTTGACGCTAATCAAGT
TGGTGACACTAGTAGTGTAGTGGACGCCCTGGGAGACGTGAGTGCTTCCG
TGTGATGAAGAAGGTGACAAGATGTTGTGTGTAAACACTCGTGCTTATGT
GGCCAACACACACAGATAAACCGCAGAGTATGCAGGAGTCCAGAAGATGG
CTGGGTACTGGAGATGACCAGGATGGCTACGATGCCAGACAGTCAGGAAG
GATCCACACGAGAGAGTGAGCTACTCGTCAAGGCAACATAGAACCCTACA
GAAGTAATTCCTCCGCATATACAACGCACGTTACATACCAACCGGCACAT
AACAGATCTACGATGATCTACGACGTACAAGTGCAGCGCTACTGAACATT
GACTCATAATGGCTATGTGCTAACAGAGCC

protein sequence of EsuBft114_3a-0001

>EsuBft114_3 ID=EsuBft114_3|Name=EsuBft114_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=141bp
MSWMSAKTMQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQCPYNQ
ARSITGEEGFPTIAYEVTVDHAGRAIAVTEGFTGSTNDKTIVCWDAAVEK
IRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVVNGYHKVHRL

mRNA from alignment at Scaffold_129:1119298..1121644+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft114_3a-0001 ID=EsuBft114_3a-0001|Name=EsuBft114_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2347bp|location=Sequence derived from alignment at Scaffold_129:1119298..1121644+ (Ectocarpus subulatus male Bft15b)
ATGTCGTGGATGAGCGCGAAGACCATGCAGGGGATGTTCCACAAGTTCTG
CAGGCACTTCGCACGGGAGATGTATGATGAACAAATTCACCTCCCTACGG
AAGAGAGCGGCAAGCTGGACCACGTCATGAAGCAGTACGATCGGCTTGGG
GTTTACGGGTGCGGTGGGTTCTATGGACGTCACACATATCGCTTGGAGCA
GGTGCCCCTACAACCAAGCCCGTTCGATCACAGGCGAGGAGGGGTTTCCC
ACGATCGCGTACGAGGTCACGGTTGATCACGCTGGCCGGGCAATTGCCGT
GACTGAGGGTTTCACCGGCTCGACGAACGACAAGACCATCGTCTGCTGGG
ATGCCGCGGTGGAGAAGATTCGGACGGACAAGCAGTACACGGAGAAGACG
TTCGACGTGTACAATGAGGACGGCACGACGACGACGCTCAAGGGGTGCTA
CTTGCTCGTCGTAAACGGGTACCACAAGGTGCATAGACTATAAAATAAGT
ACTACATACAGTGTTTGAGTGGCGAAAACATTTGTTTGGAAGAGACATGT
ATCCGGCCTGAGACAGAGAGTGCAGACAGACAGAGACAGAGACAGGGAGA
AAGAGAGAGCGCTGGCCAGTCAAGTCTTTGTTCTCGGGGAAAATGACGCA
GAGCTACTTTCGGACCGTTTCAACGCAAATCGTTTCATGGTAGTGAGATG
TCGGATACGGCAATCAAAACCTCGGCTGCCCGCTCTTGCAATCTACTCCG
GTGTTTCATAGCTGCTGTTATTTTTCGAGCGCCTCCGTTCAACCCCGAAG
CCCCCCCTTGAGTCTCCGAGTTTGAATTTCACAGCTTTCAACAACGTTGT
TGAGTAGCTTGGTGCGCCCGGCGCAGTTGTAGATGGCAAAAATAAAAGAA
CCGCGCGGCGAGTTTGCCGGCAACGATATAATACAGTAAACTAGTTAGGC
CTGTCCTCCATCGGCCGTTTTATTTTCGATTTAGATACACTAACTTTATT
TCTATACTAATTTCAAGTAATTCCACCTTCTTATTCTCCGTCATACAAGC
AAAACGGCCGATGGAGGACAGGCCTAAAAACTAGTAAACTGCCCACGGAT
GCGGTTACCCGCCGCATCTGTGATGTTCCGGAGCGTGATGGCTCTGATGT
GTTGAAGCTGGTGCTGTGATAGCTGTTGTGATGGCGTGATAGCCTAGAGG
CGTGACAGCCTGGCAGCGTGATAGCCGGTGGATATGTGTGGACACGGGCG
TGATAGCCCAGAGCGTGATAGCCGGGAAAAGGAAGATGAAATTTATCTAA
GGGCACGTGGTCAACACCGTTGCAGGCACGTATACCCCGCAAACAGCAAT
ATGTATGTGGCAAAGATGGTGCCACCATTCCCCCAATGTACCACAACTGC
GGAACCCCAAAAATTCCCCGCTCCATCTTCTCGGAACGTTCCTCGGTTGC
AATAATCTGTCAATGCTGTGAGTACATCCAACAGCCCCCCTGCTCGCTGC
ATTGTCAAGAATATTCCCGGACTTACGTATCACACAAAACCCATCCCAAA
AGCTCCAGAAATCAATGTCAATGTCCAACAGTAGTCGGATCTCCTCCTAT
TCTCTTGTAACAAAAATAAACCATAAAACCAGAAACTAGTAGTTCCTACC
AGAATTTCCATCGGCCCCCATTCATTGTGTCCAGAATCTCCAAGGATCAA
AACATTCACTACAACCATTAAATCAGAAACACTGATGATTGGAATTCCCA
TCGGTTGAGAACCATTAAACCAGGAACAACACCACCAAGAATTTCCATCG
GTCGCTGGTGAATTTTCCAAATTTCCAATATCAAATCATTCAAAACTCAA
ATAATAGAAACAACCGCCATGGGTCATATCGGAAACAAATTAATACAAAC
TATTATGGATATTGTGGTATACCCCAGCAAGGTGGCAGAGAGGCTGTGTC
CTTGACGCTAATCAAGTTGGTGACACTAGTAGTGTAGTGGACGCCCTGGG
AGACGTGAGTGCTTCCGTGTGATGAAGAAGGTGACAAGATGTTGTGTGTA
AACACTCGTGCTTATGTGGCCAACACACACAGATAAACCGCAGAGTATGC
AGGAGTCCAGAAGATGGCTGGGTACTGGAGATGACCAGGATGGCTACGAT
GCCAGACAGTCAGGAAGGATCCACACGAGAGAGTGAGCTACTCGTCAAGG
CAACATAGAACCCTACAGAAGTAATTCCTCCGCATATACAACGCACGTTA
CATACCAACCGGCACATAACAGATCTACGATGATCTACGACGTACAAGTG
CAGCGCTACTGAACATTGACTCATAATGGCTATGTGCTAACAGAGCC

Coding sequence (CDS) from alignment at Scaffold_129:1119298..1121644+

>EsuBft114_3a-0001 ID=EsuBft114_3a-0001|Name=EsuBft114_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=426bp|location=Sequence derived from alignment at Scaffold_129:1119298..1121644+ (Ectocarpus subulatus male Bft15b)
ATGTCGTGGATGAGCGCGAAGACCATGCAGGGGATGTTCCACAAGTTCTG
CAGGCACTTCGCACGGGAGATGTATGATGAACAAATTCACCTCCCTACGG
AAGAGAGCGGCAAGCTGGACCACGTCATGAAGCAGTGCCCCTACAACCAA
GCCCGTTCGATCACAGGCGAGGAGGGGTTTCCCACGATCGCGTACGAGGT
CACGGTTGATCACGCTGGCCGGGCAATTGCCGTGACTGAGGGTTTCACCG
GCTCGACGAACGACAAGACCATCGTCTGCTGGGATGCCGCGGTGGAGAAG
ATTCGGACGGACAAGCAGTACACGGAGAAGACGTTCGACGTGTACAATGA
GGACGGCACGACGACGACGCTCAAGGGGTGCTACTTGCTCGTCGTAAACG
GGTACCACAAGGTGCATAGACTATAA