EsuBft114_29a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft114_29a-0001
Unique NameEsuBft114_29a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:889523..893052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LCH3
ProteomeIdEsuBft114_29
Protein domainsIPR013261
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-TM
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Notemitochondrial import inner membrane translocase subunit tim21 os:bos taurus gn:timm21 pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1657
Hectar predicted targeting categorymitochondrion
Evalue3.75e-118
EggNOG OGsKOG4836@1|root,KOG4836@2759|Eukaryota
Ec32 ortholog descriptionMitochondrial import inner membrane translocase TIM21-like protein
Ec32 orthologEc-26_005050.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameTIMM21
KEGG koko:K17796
KEGG TC3.A.8.1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007275,GO:0008104,GO:0008150,GO:0008535,GO:0009791,GO:0009987,GO:0010257,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017004,GO:0017038,GO:0019866,GO:0022607,GO:0030150,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032981,GO:0032991,GO:0033036,GO:0033108,GO:0033365,GO:0033617,GO:0034613,GO:0034622,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0065003,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090351,GO:0098796,GO:0098798,GO:0098800,GO:1990542
Descriptionprotein import into mitochondrial matrix
COG categoryO
BRITEko00000,ko02000,ko03029
Cross References
External references for this mRNA
DatabaseAccession
GO0005744
GO0030150
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft114_29aEsuBft114_29aEctocarpus subulatus male Bft15bgeneScaffold_129 889523..893052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_29a-0001EsuBft114_29Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 890117..892979 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_29a-0001-exonagat-exon-15626Ectocarpus subulatus male Bft15bexonScaffold_129 889523..890281 -
EsuBft114_29a-0001-exonEsuBft114_29a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 890930..891109 -
EsuBft114_29a-0001-exonagat-exon-15625Ectocarpus subulatus male Bft15bexonScaffold_129 892335..893052 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_29a-0001-exonagat-three_prime_utr-1441Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 889523..890116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_29a-0001-cdsEsuBft114_29a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 890117..890281 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_29a-0001-exonagat-five_prime_utr-926Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 892980..893052 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft114_29a-0001 ID=EsuBft114_29a-0001|Name=EsuBft114_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1657bp|location=Sequence derived from alignment at Scaffold_129:889523..893052- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGCTCGCTGTGCGGCACTGCACTGACGACAGCACTGCCAACCCCGTGT
GCCTACTACTTCCATAGGTCGTGATGTCGTCACTGGCTAGCGTGCTTCGG
GTTTCTGGGCGCCGTTCCATACTTCTGTCTGCGAGAAGAGGCCAGCAACT
TGTAAGACCTACTGCTGCTGCAAGGGCACAACAGGCAGCGGCGGCAACGA
GCGCAGCAGCGCCGTTCAACACCAGCGGGAACTTCGACGCCTCGTACACT
ACTACCTCCTGCTCACCATTGAGTCGGATCGGAGCCCGCGGCGCTACCTG
GTCGGCATCCTCTTCGCCATTGCCGTTCCGGAGACGGCAAGCCTGCGGCC
TGCGATGGGTGCAATCGACCGCAGTGGCACATCAGCAACACCGCCTCCCT
CAATGGGCAACCGCGGAAACCTTCTCCGCCGGCAGCAGCAAGCGCGGCAT
GATGAGCAAGGCTAGCCGGAAAGGCGACGACTCGAAAGGCGAGCAGCAGC
AGCAGAAGCAGCAAGGAGAGGAGCAGCAGTACGAGGACGCCGACTACGAG
CCGGAGCCCGAGGAGAAGATATCGATCGTCAAGACCGTGGCCGGCCTTTG
CGTCCTCGGCCTGGTCCTTGCGGCCCTCGGCGCCACGGTCACGGAGCTCT
GGCCGAGCCACATGGCGCCCCAGTCCATCATGTCGCACGCCCACGACGTG
TTTCAAGCCGACCCTGATACCGCGAACCACTTCGGGACGCCTTTGAAGGT
GTACGGGCGGGACAACAACCGGCACCGGGAAGGGCGGAGGAACTTCGTGG
AGCACGTGGACCATGAGGACCCCATCGACAAGAGCAAGAGAACCAGGGTC
CGCTTCAACGTCGAGGGCCCGCACGGCCACGGCATGGCGTACGCCGAGGT
GTCGAACAAGATGGAGTCGGGGGAATGGGTCTACCTGTGCGTGCAGGACC
TCCAAACGGGCCACGTTATCACGCTCCACGACAACCGAGCCCTGCTCATG
GCGCAGGCCCAGGCGGGATCGGACGAGGAGAAGAACGCCTTCCGGAAAAT
GCTTGGGCAGTAATGAAAATAGAGGCATGATTTGGTCGGGGGGGGGCGTT
TCTGTTTTCTTTGAAGTCGGCAGCCGGCCAGATCGACCTTGTTCGCGCGT
TCATTTCTTGTGGTCTGTGCCCGTGGTGGTGTTTTCCACGTATGGAGTGC
GCTGTTCGGGACAGCGGCTCTGTTTTGTTCTCCTTTCACCCGGGGATGCC
CGGGCGGCTTCGCGTTGTCCCCCCGCTTGATGACTTCTTGTGCTTGCTAA
TTGGGCACACCTCGCACGTGCCGATGCGTGAAGGAAGAGTTCCACGAGCA
TTTAGGTACACCGGCAGAGTGCGTCCGTCCGCAATGTTTGCAGGTGTTTT
GGAGGTCATATGCCTTGACCAAGAGTTGAGCAGGGCGGGGCAGGGGGGCA
CATTTTTTGTGAATGAGCCTGGATCGTCAGAGCGTTGTTTCGATTTCCAA
AGCTGACTACGCATTAGTGTTGCTCGGCGTGGTCAGTAATGGACTCCATC
ACGAACGTTTGCTTTCTTTTTTCGCGCCCCTCTCTCGCGAGGTCAATGGT
CTCTGGAAGTGAAAGCTCCAGAAAGTAAATTAAGTCATGCGCAGCTGTCA
TCCGTAC
back to top

protein sequence of EsuBft114_29a-0001

>EsuBft114_29 ID=EsuBft114_29|Name=EsuBft114_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=329bp
MSSLASVLRVSGRRSILLSARRGQQLVRPTAAARAQQAAAATSAAAPFNT
SGNFDASYTTTSCSPLSRIGARGATWSASSSPLPFRRRQACGLRWVQSTA
VAHQQHRLPQWATAETFSAGSSKRGMMSKASRKGDDSKGEQQQQKQQGEE
QQYEDADYEPEPEEKISIVKTVAGLCVLGLVLAALGATVTELWPSHMAPQ
SIMSHAHDVFQADPDTANHFGTPLKVYGRDNNRHREGRRNFVEHVDHEDP
IDKSKRTRVRFNVEGPHGHGMAYAEVSNKMESGEWVYLCVQDLQTGHVIT
LHDNRALLMAQAQAGSDEEKNAFRKMLGQ
back to top

mRNA from alignment at Scaffold_129:889523..893052-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft114_29a-0001 ID=EsuBft114_29a-0001|Name=EsuBft114_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3530bp|location=Sequence derived from alignment at Scaffold_129:889523..893052- (Ectocarpus subulatus male Bft15b)
TGTGCTCGCTGTGCGGCACTGCACTGACGACAGCACTGCCAACCCCGTGT
GCCTACTACTTCCATAGGTCGTGATGTCGTCACTGGCTAGCGTGCTTCGG
GTTTCTGGGCGCCGTTCCATACTTCTGTCTGCGAGAAGAGGCCAGCAACT
TGTAAGACCTACTGCTGCTGCAAGGGCACAACAGGCAGCGGCGGCAACGA
GCGCAGCAGCGCCGTTCAACACCAGCGGGAACTTCGACGCCTCGTACACT
ACTACCTCCTGCTCACCATTGAGTCGGATCGGAGCCCGCGGCGCTACCTG
GTCGGCATCCTCTTCGCCATTGCCGTTCCGGAGACGGCAAGCCTGCGGCC
TGCGATGGGTGCAATCGACCGCAGTGGCACATCAGCAACACCGCCTCCCT
CAATGGGCAACCGCGGAAACCTTCTCCGCCGGCAGCAGCAAGCGCGGCAT
GATGAGCAAGGCTAGCCGGAAAGGCGACGACTCGAAAGGCGAGCAGCAGC
AGCAGAAGCAGCAAGGAGAGGAGCAGCAGTACGAGGACGCCGACTACGAG
CCGGAGCCCGAGGAGAAGATATCGATCGTCAAGACCGTGGCCGGCCTTTG
CGTCCTCGGCCTGGTCCTTGCGGCCCTCGGCGCCACGGTCACGGAGCTCT
GGCCGAGCCACATGGCGCCCCAGTCCATCATGTCGCACGCCCACGACGTG
TTTCAAGCCGACCCTGATGTGAGTCGTGTGATGGCGAAACGCCGCCGCCA
CCTGCCGGAGACTAGGATTCATTTTCTGCATTCTTATGCACCGCCCGTGT
TTTGTTGTCGGCACACAAACAAACCTGTGGGACACGAGGGTTCCAATCCC
GGGATGACACGAAGTACCGTCCGTGGGTTGCGTAAGATGTCACTCCCCTG
CTGGACCGATTTTCAGATCTCGATTACTCGGCAGGAAAAGGAGCCACGGG
CGCGAAAATGGTGGCTTAAGAAACGCTTCGTCGAGAGCTTTCCGAAATCG
CCCCATCTGATTTCGGCATGTTCTACGTCGTATAGTAGTCAGGCTTTGAA
AATGCGTCCAGGTTGGGGGGTATCTTGCGCATCGTACTCTGTAGTCTGAT
ACGAAAAGTGCTAGAGTATTCGCACCAAGGTTCGGCCTACTACTGTACAT
GTTCACTGGAGAAATAGGGCCACTTCCGAACACTCGTCGCATCCGTCTGG
TGGCAACTCAAGCGGGAGCACAGGAAAAGGAACGTGGAAGGGGCCTCGGG
GAGAGAGGAATGTCATCCGCGTGACGCTGCCCTGTAATCGGAGTGGTTGA
TGGGAGAGCATGACGGCGTAGGACAAGCAACGACAGTAGAGAAGAAATAA
CAGACCCCCAAAACAGTTCCCGATGTGGGAAGCAAGCCGACTGAACCTTG
AGGATGTTTCGGCCGTGGGTGACTTTTTCATGAGTCGACCCTCTCAGTAT
CATCGGGGCCAATGGTGCTGAGTGCCCTCGTGCTCTCGCGGGAGCTAGAC
TTATCCTTATTCAAGGCCGGAGGCCCGGGCTCTCGAGTACTCACGCCAAG
CAAGAGTTGTTTTTAGTTCACGACGGCCTTCACGAGCTATACACGCGATG
TTGATGTTATGGTTTTACGACTCCGGCGGCTTCAGTCCAGCTATTTTTCC
CCACAGGCAGTTTCTACATTATGCTCCGTTATCACACATGTACCAGCAAC
GTGTGCATACGAACAAAAGGTGTCTGAACATAAAGTGGTGGCAGCCATCT
ACAGCGGTGGTGGTCGTTCGCAAACAACAGGGTGGTTGCTACCCTCTGGC
CCGCCCCCCGCCCCCCCCCGTACAAACTTCCATCACTCGCCACCATCCTT
GCACCAGAACTAACGAACGCATTCACTTCGTTGTCCCCCCTCTTGACCGC
CACGCACCCCTGCCTGAAACCCCTACGCACACGGGGGGTCCAGACCGCGA
ACCACTTCGGGACGCCTTTGAAGGTGTACGGGCGGGACAACAACCGGCAC
CGGGAAGGGCGGAGGAACTTCGTGGAGCACGTGGACCATGAGGACCCCAT
CGACAAGAGCAAGAGAACCAGGGTCCGCTTCAACGTCGAGGGCCCGCACG
GCCACGGCATGGCGTACGCCGAGGTGTGTGCGTGTGCGCGTGTTTGTCGG
TAATTAGCATCGACTGTGCTAACCAGCTGACCTATGAAGAGACGCTTTGT
GCGGGGTGCTTGCTTTTTTGAGCTAGTATTGACCACGTCAGTGTGTGTAT
GGGGTGCGTCCTTTTTTTTTGCTTGTTTGCATCGACTGAGCTATGGCCGG
CTGACCAATGAAAACAACATCAGTCCCGCTGGTAGCGGGATAAAAGCGGC
GGGGAACACGCTCTCTTATCAAGGGGTTCTACCGATAGGGTGTGTGTGCG
TGTGTGGTGCCCTTAGTGTCATTTGGAGTCGGTTGGGAGAGCGGCCGTGG
TGTTGCCCTTTTCGGGCGCGTACAGAGCATCCATGCGGAGCCTCCATCTA
GGCGTTGGCGGCATGATGTCCAGAGCAGGGTGGTCACGGTTGCGCGCTAT
GGGTGTAGATAAGGCGTTGCAATCCATTCGTGCCAACCACAGCCGTGCCC
GCTTGATATGGGTTGAACGAAGATGCATCACGGAGGAGACCGTTGTCGGA
GGTATCGGATTTTAGAGGGTGGTAAGCAAGAACCGGCTTATCCCGGCTTT
GAGATATGCATGATTAGCACCCGCATTTTTTTTTTTTTCACTCCTCTCCC
GGCCGCCGTCGTCGGCCACAGGTGTCGAACAAGATGGAGTCGGGGGAATG
GGTCTACCTGTGCGTGCAGGACCTCCAAACGGGCCACGTTATCACGCTCC
ACGACAACCGAGCCCTGCTCATGGCGCAGGCCCAGGCGGGATCGGACGAG
GAGAAGAACGCCTTCCGGAAAATGCTTGGGCAGTAATGAAAATAGAGGCA
TGATTTGGTCGGGGGGGGGCGTTTCTGTTTTCTTTGAAGTCGGCAGCCGG
CCAGATCGACCTTGTTCGCGCGTTCATTTCTTGTGGTCTGTGCCCGTGGT
GGTGTTTTCCACGTATGGAGTGCGCTGTTCGGGACAGCGGCTCTGTTTTG
TTCTCCTTTCACCCGGGGATGCCCGGGCGGCTTCGCGTTGTCCCCCCGCT
TGATGACTTCTTGTGCTTGCTAATTGGGCACACCTCGCACGTGCCGATGC
GTGAAGGAAGAGTTCCACGAGCATTTAGGTACACCGGCAGAGTGCGTCCG
TCCGCAATGTTTGCAGGTGTTTTGGAGGTCATATGCCTTGACCAAGAGTT
GAGCAGGGCGGGGCAGGGGGGCACATTTTTTGTGAATGAGCCTGGATCGT
CAGAGCGTTGTTTCGATTTCCAAAGCTGACTACGCATTAGTGTTGCTCGG
CGTGGTCAGTAATGGACTCCATCACGAACGTTTGCTTTCTTTTTTCGCGC
CCCTCTCTCGCGAGGTCAATGGTCTCTGGAAGTGAAAGCTCCAGAAAGTA
AATTAAGTCATGCGCAGCTGTCATCCGTAC
back to top

Coding sequence (CDS) from alignment at Scaffold_129:889523..893052-

>EsuBft114_29a-0001 ID=EsuBft114_29a-0001|Name=EsuBft114_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=990bp|location=Sequence derived from alignment at Scaffold_129:889523..893052- (Ectocarpus subulatus male Bft15b)
ATGTCGTCACTGGCTAGCGTGCTTCGGGTTTCTGGGCGCCGTTCCATACT
TCTGTCTGCGAGAAGAGGCCAGCAACTTGTAAGACCTACTGCTGCTGCAA
GGGCACAACAGGCAGCGGCGGCAACGAGCGCAGCAGCGCCGTTCAACACC
AGCGGGAACTTCGACGCCTCGTACACTACTACCTCCTGCTCACCATTGAG
TCGGATCGGAGCCCGCGGCGCTACCTGGTCGGCATCCTCTTCGCCATTGC
CGTTCCGGAGACGGCAAGCCTGCGGCCTGCGATGGGTGCAATCGACCGCA
GTGGCACATCAGCAACACCGCCTCCCTCAATGGGCAACCGCGGAAACCTT
CTCCGCCGGCAGCAGCAAGCGCGGCATGATGAGCAAGGCTAGCCGGAAAG
GCGACGACTCGAAAGGCGAGCAGCAGCAGCAGAAGCAGCAAGGAGAGGAG
CAGCAGTACGAGGACGCCGACTACGAGCCGGAGCCCGAGGAGAAGATATC
GATCGTCAAGACCGTGGCCGGCCTTTGCGTCCTCGGCCTGGTCCTTGCGG
CCCTCGGCGCCACGGTCACGGAGCTCTGGCCGAGCCACATGGCGCCCCAG
TCCATCATGTCGCACGCCCACGACGTGTTTCAAGCCGACCCTGATACCGC
GAACCACTTCGGGACGCCTTTGAAGGTGTACGGGCGGGACAACAACCGGC
ACCGGGAAGGGCGGAGGAACTTCGTGGAGCACGTGGACCATGAGGACCCC
ATCGACAAGAGCAAGAGAACCAGGGTCCGCTTCAACGTCGAGGGCCCGCA
CGGCCACGGCATGGCGTACGCCGAGGTGTCGAACAAGATGGAGTCGGGGG
AATGGGTCTACCTGTGCGTGCAGGACCTCCAAACGGGCCACGTTATCACG
CTCCACGACAACCGAGCCCTGCTCATGGCGCAGGCCCAGGCGGGATCGGA
CGAGGAGAAGAACGCCTTCCGGAAAATGCTTGGGCAGTAA
back to top