EsuBft114_21a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft114_21a-0001
Unique NameEsuBft114_21a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:937007..938821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft114_21
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length89
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft114_21aEsuBft114_21aEctocarpus subulatus male Bft15bgeneScaffold_129 937007..938821 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_21a-0001-exonagat-exon-15619Ectocarpus subulatus male Bft15bexonScaffold_129 937007..937049 -
EsuBft114_21a-0001-exonEsuBft114_21a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 937247..937497 -
EsuBft114_21a-0001-exonagat-exon-15618Ectocarpus subulatus male Bft15bexonScaffold_129 937790..938382 -
EsuBft114_21a-0001-exonagat-exon-15620Ectocarpus subulatus male Bft15bexonScaffold_129 938812..938821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_21a-0001-cdsEsuBft114_21a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 937007..937049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft114_21a-0001EsuBft114_21Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 937007..938821 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft114_21a-0001 ID=EsuBft114_21a-0001|Name=EsuBft114_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=897bp|location=Sequence derived from alignment at Scaffold_129:937007..938821- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGAGGTGACACCACGGGTCGAGATATTCAAAATAGGACGGCGTC
GACCCCATCAGCGAGAAGCCACCCTCACCGAGACGTAGTAAACCACCGTC
GTTCGGTGGATGTCCGCGGGGGTTTCCTTTCCATACCTGATGCCAACCAC
GTGGCCGGCGGCGGCGAGTGGAGTAATTTTGACGACTCTGTGGAGGAGGC
ACCAGACGACAGCACAAAAACGAGAACGGAGGCTGCAACATCTACCGTTG
GTGGGAAAGCGCACCGGCAGCGATGGGTGTGGGATGAGTGGGACGACAGC
GAAGCGAGTTTTTCCACCAGTTGCAGAGAGTCGAAGCAACCAGTGGCGCC
GCGCGCGTCTCTATCGGAGAAAACGTCGCCCGGTCGTGCTTCCAACTCTT
CCTCCGCTACACTTGACGAAATTTCGCAACCTGTGACTGACCACGACCGG
ACGACGCGGTCGTCGACTCGGGGCCGGAACAATGACAGAGCAGCGGCCAA
TGTTGATGGTGGTGAGGCCACCCCGGCGGCGATGAAGGCGTTCGAGGACG
TGCAGGCCACCGCACGGGCAATGAAAGTGAACCTCAAGGAGAGGAGATCC
GAGGTGCTAGATCTCAAGACGAACCTGCAGCGCGTGCGAGCTTCCAACGA
ACGCCGCCGGGCGAAGGTGTCTGAGCGGTGGGCGGCAAGGATGGCAGCGG
CCGCTGAGGAGAGGGCGGCGGCGGCGGATCGGCACAGGGCCTTCGCGCGG
CAGCTGAAGGGTGACGTGGACGCCTTGGAGGAGAAGCTGGGTGGTCTAGA
GAGACAGGCGAGTCGTTTCGCGCTTGGTGCAGCAACAGCAGCAGTAGGGC
TTGTGTCGGCCGCTTCCGTGAAGGTAGAGACCGGGACTGCGTCGTAG
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protein sequence of EsuBft114_21a-0001

>EsuBft114_21 ID=EsuBft114_21|Name=EsuBft114_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=298bp
MSGGDTTGRDIQNRTASTPSARSHPHRDVVNHRRSVDVRGGFLSIPDANH
VAGGGEWSNFDDSVEEAPDDSTKTRTEAATSTVGGKAHRQRWVWDEWDDS
EASFSTSCRESKQPVAPRASLSEKTSPGRASNSSSATLDEISQPVTDHDR
TTRSSTRGRNNDRAAANVDGGEATPAAMKAFEDVQATARAMKVNLKERRS
EVLDLKTNLQRVRASNERRRAKVSERWAARMAAAAEERAAAADRHRAFAR
QLKGDVDALEEKLGGLERQASRFALGAATAAVGLVSAASVKVETGTAS
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mRNA from alignment at Scaffold_129:937007..938821-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft114_21a-0001 ID=EsuBft114_21a-0001|Name=EsuBft114_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1815bp|location=Sequence derived from alignment at Scaffold_129:937007..938821- (Ectocarpus subulatus male Bft15b)
ATGTCTGGAGGTATGCATATTCGCGACGAAGGGGGTACGGGTCTCGCGCT
TAGGCCTAGGCCTGTTGAACAATCTGGCAAGTTCAGCAGCATCCTGGCAT
ATTTGGATCACGTATCAGATGATGTGCCGAAGCAACACCGCGGCCAGCGG
ATCAACGACCACGCAACGGTTCGGCTGGGTAGTGGTTCGTCGTCGCCGTC
GTCGATCTCATCTTCAGAGCAACAACAGAGTCGGAGGCGACCCCGACAGC
AGCCAAGAGGGCCTTCGCAATCATCCTACCGCCGTAACAGGGCTTCAGCT
GCTGGAACCCGGACCCCGTGGAAGAACTCAGTCAAGGACGACAAAACGCC
GACGTCGACATCATCGGCACCTCCTGAGCGCAGCACTACATGTAGAGCGA
GCGGTGGTCACGACCTACGCGGTTCACCCTTTGGCGTAGGTGACACCACG
GGTCGAGATATTCAAAATAGGACGGCGTCGACCCCATCAGCGAGAAGCCA
CCCTCACCGAGACGTAGTAAACCACCGTCGTTCGGTGGATGTCCGCGGGG
GTTTCCTTTCCATACCTGATGCCAACCACGTGGCCGGCGGCGGCGAGTGG
AGTAATTTTGACGACTCTGTGGAGGAGGCACCAGACGACAGCACAAAAAC
GAGAACGGAGGCTGCAACATCTACCGTTGGTGGGAAAGCGCACCGGCAGC
GATGGGTGTGGGATGAGTGGGACGACAGCGAAGCGAGTTTTTCCACCAGT
TGCAGAGAGTCGAAGCAACCAGTGGCGCCGCGCGCGTCTCTATCGGAGAA
AACGTCGCCCGGTCGTGCTTCCAACTCTTCCTCCGCTACACTTGACGAAA
TTTCGCAACCTGTGACTGACCACGACCGGACGACGCGGTCGTCGACTCGG
GGCCGGAACAATGACAGAGCAGCGGCCAATGTTGATGGTGGTGAGGCCAC
CCCGGCGGCGATGAAGGCGTTCGAGGACGTGCAGGCCACCGCACGGGCAA
TGAAAGTGAACCTCAAGGAGAGGAGATCCGAGGTGTGCAGATTGTTGATA
CCCAGTGTAATGTTGTTTTGCAGGATGGTGTACAGCAGTATCATTCTCTT
TTCTGAATGCGGCAGATCAAACCAGGGGACAGGAGAGTGTCGACTACACG
GATGTCAAACGGTCGTGAAAGGCGATGCAGTCTTGCCTGTGGAGGAACTA
CTGTGCCTCTTGTTTCGCCCTCCGCGGATGGCCACTTCTTCAGTTCCTGT
AAGGAGATAGCTGCAAGTCCCGTCCAAGTAGCATACGAGGTACCAACCGA
GTAACAAACCGCTCACAACAACAGGTGCTAGATCTCAAGACGAACCTGCA
GCGCGTGCGAGCTTCCAACGAACGCCGCCGGGCGAAGGTGTCTGAGCGGT
GGGCGGCAAGGATGGCAGCGGCCGCTGAGGAGAGGGCGGCGGCGGCGGAT
CGGCACAGGGCCTTCGCGCGGCAGCTGAAGGGTGACGTGGACGCCTTGGA
GGAGAAGCTGGGTGGTCTAGAGAGACAGGCGAGTCGTTTCGCGCTTGGTG
CAGCAACAGCAGCAGTAGGGCTTGTGTATACCTCCCTGCGTCTCTGATGC
TACTGCTGGATGGACATGTATTGTCAACTGTTCCTGTTTATTGCCAAGAC
ATGCTTGCGCACCTTCGCGCGCGGTTGTCGAGTATACGAAGCATCGTGCC
AAGCGTGCAACCCTCACGTTGGCCGACTACATTCCAACCAAAGTGTCGCT
CGTCCGACCGATCAATCAACAGGTCGGCCGCTTCCGTGAAGGTAGAGACC
GGGACTGCGTCGTAG
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Coding sequence (CDS) from alignment at Scaffold_129:937007..938821-

>EsuBft114_21a-0001 ID=EsuBft114_21a-0001|Name=EsuBft114_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=897bp|location=Sequence derived from alignment at Scaffold_129:937007..938821- (Ectocarpus subulatus male Bft15b)
ATGTCTGGAGGTGACACCACGGGTCGAGATATTCAAAATAGGACGGCGTC
GACCCCATCAGCGAGAAGCCACCCTCACCGAGACGTAGTAAACCACCGTC
GTTCGGTGGATGTCCGCGGGGGTTTCCTTTCCATACCTGATGCCAACCAC
GTGGCCGGCGGCGGCGAGTGGAGTAATTTTGACGACTCTGTGGAGGAGGC
ACCAGACGACAGCACAAAAACGAGAACGGAGGCTGCAACATCTACCGTTG
GTGGGAAAGCGCACCGGCAGCGATGGGTGTGGGATGAGTGGGACGACAGC
GAAGCGAGTTTTTCCACCAGTTGCAGAGAGTCGAAGCAACCAGTGGCGCC
GCGCGCGTCTCTATCGGAGAAAACGTCGCCCGGTCGTGCTTCCAACTCTT
CCTCCGCTACACTTGACGAAATTTCGCAACCTGTGACTGACCACGACCGG
ACGACGCGGTCGTCGACTCGGGGCCGGAACAATGACAGAGCAGCGGCCAA
TGTTGATGGTGGTGAGGCCACCCCGGCGGCGATGAAGGCGTTCGAGGACG
TGCAGGCCACCGCACGGGCAATGAAAGTGAACCTCAAGGAGAGGAGATCC
GAGGTGCTAGATCTCAAGACGAACCTGCAGCGCGTGCGAGCTTCCAACGA
ACGCCGCCGGGCGAAGGTGTCTGAGCGGTGGGCGGCAAGGATGGCAGCGG
CCGCTGAGGAGAGGGCGGCGGCGGCGGATCGGCACAGGGCCTTCGCGCGG
CAGCTGAAGGGTGACGTGGACGCCTTGGAGGAGAAGCTGGGTGGTCTAGA
GAGACAGGCGAGTCGTTTCGCGCTTGGTGCAGCAACAGCAGCAGTAGGGC
TTGTGTCGGCCGCTTCCGTGAAGGTAGAGACCGGGACTGCGTCGTAG
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